Wall clock time and date at job start Tue Mar 31 2020 23:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35455 * 125.56280 * 2 1 4 4 C 1.39828 * 107.86506 * 179.97438 * 3 2 1 5 5 C 1.37870 * 107.08701 * 359.97438 * 4 3 2 6 6 C 1.46678 * 126.23153 * 180.02562 * 5 4 3 7 7 O 1.21697 * 119.99606 * 175.02902 * 6 5 4 8 8 N 1.34774 * 120.00175 * 355.02432 * 6 5 4 9 9 C 1.46504 * 119.99943 * 185.08727 * 8 6 5 10 10 C 1.53000 * 109.47029 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46805 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.46772 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99933 * 180.02562 * 12 11 10 14 14 O 1.21286 * 120.00044 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00267 * 180.02562 * 13 12 11 16 16 S 1.81002 * 109.47469 * 180.02562 * 15 13 12 17 17 C 1.76191 * 99.99937 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00335 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00014 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00356 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99758 * 359.97438 * 19 17 16 22 22 H 1.48508 * 109.47267 * 89.99821 * 21 19 17 23 23 H 1.48500 * 109.47355 * 209.99817 * 21 19 17 24 24 H 1.48500 * 109.47186 * 329.99964 * 21 19 17 25 25 N 1.35526 * 125.56609 * 179.68851 * 2 1 3 26 26 C 1.46498 * 125.67984 * 359.97438 * 25 2 1 27 27 H 1.08998 * 109.46989 * 90.02700 * 1 2 3 28 28 H 1.08995 * 109.47523 * 330.02446 * 1 2 3 29 29 H 1.08997 * 109.46616 * 210.02372 * 1 2 3 30 30 H 1.08003 * 126.06726 * 359.96848 * 3 2 1 31 31 H 1.08009 * 126.45842 * 180.02562 * 4 3 2 32 32 H 0.97002 * 120.00194 * 5.08432 * 8 6 5 33 33 H 1.09004 * 109.46856 * 299.99763 * 9 8 6 34 34 H 1.08996 * 109.47484 * 59.99475 * 9 8 6 35 35 H 1.09004 * 109.47101 * 299.99604 * 10 9 8 36 36 H 1.09003 * 109.46925 * 59.99898 * 10 9 8 37 37 H 1.08996 * 109.47169 * 299.99495 * 11 10 9 38 38 H 1.08993 * 109.47185 * 60.00201 * 11 10 9 39 39 H 0.96999 * 119.99940 * 0.02562 * 12 11 10 40 40 H 1.09004 * 109.46747 * 299.99742 * 15 13 12 41 41 H 1.08996 * 109.47476 * 59.99382 * 15 13 12 42 42 H 0.97002 * 120.00758 * 179.97438 * 20 19 17 43 43 H 1.08991 * 109.47905 * 95.46571 * 26 25 2 44 44 H 1.09006 * 109.47360 * 215.46766 * 26 25 2 45 45 H 1.09007 * 109.47006 * 335.46069 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6768 0.0006 5 6 3.6122 -0.7018 0.0015 6 6 4.7861 -1.5813 0.0029 7 8 4.6433 -2.7864 0.0950 8 7 6.0227 -1.0549 -0.0978 9 6 7.1873 -1.9367 -0.2087 10 6 8.4590 -1.0918 -0.3082 11 6 9.6754 -2.0128 -0.4233 12 7 10.8930 -1.2038 -0.5192 13 6 12.0943 -1.8047 -0.6300 14 8 12.1674 -3.0152 -0.6499 15 6 13.3470 -0.9726 -0.7280 16 16 14.7858 -2.0620 -0.8659 17 6 16.0710 -0.8606 -0.9629 18 1 15.8302 0.1917 -0.9298 19 6 17.3930 -1.2666 -1.0820 20 7 18.3530 -0.3691 -1.1550 21 14 17.8096 -3.0866 -1.1385 22 1 17.7992 -3.5532 -2.5484 23 1 19.1577 -3.3043 -0.5550 24 1 16.8030 -3.8493 -0.3573 25 7 2.2953 -1.1024 0.0060 26 6 1.8243 -2.4896 0.0141 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3634 0.8901 0.5134 29 1 -0.3632 -0.8898 0.5142 30 1 1.9545 2.1269 -0.0005 31 1 4.5025 1.3093 0.0011 32 1 6.1416 -0.0922 -0.0970 33 1 7.2442 -2.5760 0.6724 34 1 7.0910 -2.5555 -1.1008 35 1 8.4024 -0.4523 -1.1890 36 1 8.5551 -0.4735 0.5843 37 1 9.7319 -2.6520 0.4577 38 1 9.5795 -2.6314 -1.3156 39 1 10.8346 -0.2357 -0.5029 40 1 13.2902 -0.3330 -1.6088 41 1 13.4432 -0.3542 0.1644 42 1 19.2770 -0.6528 -1.2378 43 1 1.7998 -2.8710 -1.0066 44 1 2.5003 -3.0994 0.6136 45 1 0.8224 -2.5306 0.4415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703316657.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:28 Heat of formation + Delta-G solvation = -38.092326 kcal Electronic energy + Delta-G solvation = -24881.210610 eV Core-core repulsion = 21025.401888 eV Total energy + Delta-G solvation = -3855.808722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.90906 -39.62738 -39.23793 -36.40513 -34.68967 -33.33828 -32.44786 -32.38778 -31.54333 -29.36327 -27.42841 -26.93419 -25.65584 -25.04365 -22.45595 -22.17894 -20.72220 -20.48384 -19.58566 -18.17759 -17.80949 -16.64254 -16.50047 -16.37809 -16.06163 -15.94627 -15.38113 -15.20976 -14.95656 -14.56135 -14.40703 -13.93901 -13.79848 -13.73934 -13.53394 -13.30012 -13.22463 -13.14941 -12.80856 -12.53757 -12.44942 -12.39242 -12.27888 -12.08459 -11.98009 -11.39937 -11.26897 -11.00901 -10.62126 -10.39728 -9.86240 -9.56183 -9.55871 -9.19422 -9.04715 -8.98723 -8.50764 -8.49306 -6.92543 -6.29419 -4.01296 1.02729 2.12813 2.24407 2.71591 2.92576 2.95268 2.99498 3.31344 3.34727 3.50722 3.64712 4.24306 4.32436 4.33057 4.34353 4.54850 4.56463 4.59283 4.61419 4.77143 4.77775 4.94928 5.00609 5.05473 5.09786 5.15232 5.16440 5.25134 5.28520 5.32953 5.47802 5.62593 5.69982 5.71507 5.77661 5.80432 5.94928 5.99780 6.34647 6.47030 6.54999 6.74068 7.05184 7.56399 7.77223 7.93532 8.40916 8.46137 9.16841 10.79794 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.042821 B = 0.001366 C = 0.001327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.723496 B =20498.178259 C =21101.746262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.042 3.958 3 C -0.206 4.206 4 C -0.137 4.137 5 C -0.056 4.056 6 C 0.590 3.410 7 O -0.548 6.548 8 N -0.719 5.719 9 C 0.125 3.875 10 C -0.144 4.144 11 C 0.125 3.875 12 N -0.738 5.738 13 C 0.530 3.470 14 O -0.518 6.518 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 N -0.407 5.407 26 C 0.065 3.935 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.404 0.596 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.400 0.600 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.271 0.729 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.778 4.136 2.734 38.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 C -0.230 4.230 4 C -0.163 4.163 5 C -0.169 4.169 6 C 0.378 3.622 7 O -0.428 6.428 8 N -0.370 5.370 9 C 0.001 3.999 10 C -0.182 4.182 11 C 0.000 4.000 12 N -0.392 5.392 13 C 0.316 3.684 14 O -0.393 6.393 15 C -0.275 4.275 16 S 0.084 5.916 17 C -0.670 4.670 18 H 0.106 0.894 19 C -0.112 4.112 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 N -0.080 5.080 26 C -0.076 4.076 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.161 0.839 31 H 0.162 0.838 32 H 0.239 0.761 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.234 0.766 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -37.642 0.862 2.736 37.751 hybrid contribution 0.420 1.808 -0.075 1.858 sum -37.222 2.669 2.661 37.412 Atomic orbital electron populations 1.20413 0.87676 1.03536 1.03011 1.20608 0.93869 0.85828 1.07160 1.20630 0.92429 0.97846 1.12074 1.21330 0.97976 0.91854 1.05149 1.19945 0.84297 0.93515 1.19188 1.16957 0.82286 0.86784 0.76184 1.90805 1.86328 1.14955 1.50678 1.45578 1.05445 1.10741 1.75273 1.21254 0.82823 0.92600 1.03174 1.21982 0.93382 0.99094 1.03717 1.21106 0.82515 0.93525 1.02855 1.45919 1.05799 1.10169 1.77356 1.20292 0.84123 0.88692 0.75296 1.90711 1.86482 1.14229 1.47835 1.23279 0.95840 1.02593 1.05772 1.84806 0.97479 1.12552 1.96720 1.22318 0.91985 0.94349 1.58329 0.89384 1.24705 0.95090 0.98282 0.93158 1.69932 1.00307 1.33755 1.47703 0.86740 0.79625 0.85322 0.80197 1.19196 1.19921 1.15918 1.43759 1.04609 1.06684 1.52985 1.22254 1.01492 0.79558 1.04298 0.90602 0.89724 0.91560 0.83937 0.83796 0.76127 0.90644 0.90765 0.90278 0.90274 0.91154 0.91178 0.76619 0.88465 0.88416 0.91930 0.90510 0.88013 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.31 10.07 36.01 0.36 0.05 16 2 C 0.04 0.29 6.87 -81.95 -0.56 -0.27 16 3 C -0.21 -1.42 10.71 -39.98 -0.43 -1.84 16 4 C -0.14 -0.99 10.35 -39.12 -0.41 -1.39 16 5 C -0.06 -0.51 6.89 -81.98 -0.56 -1.07 16 6 C 0.59 5.88 7.77 -12.85 -0.10 5.78 16 7 O -0.55 -7.10 14.78 5.19 0.08 -7.02 16 8 N -0.72 -5.13 5.54 -61.62 -0.34 -5.47 16 9 C 0.13 0.92 5.68 -4.04 -0.02 0.90 16 10 C -0.14 -0.87 5.44 -26.73 -0.15 -1.01 16 11 C 0.12 1.23 5.67 -4.04 -0.02 1.20 16 12 N -0.74 -8.60 5.56 -60.29 -0.33 -8.94 16 13 C 0.53 9.15 7.85 -10.99 -0.09 9.06 16 14 O -0.52 -11.08 15.86 5.55 0.09 -10.99 16 15 C -0.12 -2.35 6.16 36.01 0.22 -2.12 16 16 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 17 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 18 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.49 13.97 55.49 0.78 -25.72 16 21 Si 0.86 21.76 27.74 -169.99 -4.71 17.05 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 25 N -0.41 -3.35 3.16 -115.62 -0.37 -3.71 16 26 C 0.07 0.41 10.32 59.85 0.62 1.03 16 27 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.07 0.18 6.91 -51.93 -0.36 -0.18 16 30 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 31 H 0.14 0.66 7.45 -52.48 -0.39 0.27 16 32 H 0.40 1.84 7.37 -40.82 -0.30 1.54 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.40 3.40 8.47 -40.82 -0.35 3.05 16 40 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 41 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.81 6.55 -51.93 -0.34 0.47 16 45 H 0.08 0.31 6.80 -51.93 -0.35 -0.05 16 LS Contribution 392.95 15.07 5.92 5.92 Total: -1.00 -37.78 392.95 -8.55 -46.33 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.74 Total: -0.21 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -0.92 Total: -1.65 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.27 Total: -43.84 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.16 Total: -18.01 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.05 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.78 -8.55 -46.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703316657.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.236 kcal (2) G-P(sol) polarization free energy of solvation -37.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds