Wall clock time and date at job start Tue Mar 31 2020 23:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35455 * 125.56280 * 2 1 4 4 C 1.39828 * 107.86506 * 179.97438 * 3 2 1 5 5 C 1.37870 * 107.08701 * 359.97438 * 4 3 2 6 6 C 1.46678 * 126.23153 * 180.02562 * 5 4 3 7 7 O 1.21697 * 119.99606 * 175.02902 * 6 5 4 8 8 N 1.34774 * 120.00175 * 355.02432 * 6 5 4 9 9 C 1.46504 * 119.99943 * 185.08727 * 8 6 5 10 10 C 1.53000 * 109.47029 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46805 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.46772 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99933 * 180.02562 * 12 11 10 14 14 O 1.21286 * 120.00044 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00267 * 180.02562 * 13 12 11 16 16 S 1.81002 * 109.47469 * 180.02562 * 15 13 12 17 17 C 1.76191 * 99.99937 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00335 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00014 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00356 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99758 * 359.97438 * 19 17 16 22 22 H 1.48508 * 109.47267 * 89.99821 * 21 19 17 23 23 H 1.48500 * 109.47355 * 209.99817 * 21 19 17 24 24 H 1.48500 * 109.47186 * 329.99964 * 21 19 17 25 25 N 1.35526 * 125.56609 * 179.68851 * 2 1 3 26 26 C 1.46498 * 125.67984 * 359.97438 * 25 2 1 27 27 H 1.08998 * 109.46989 * 90.02700 * 1 2 3 28 28 H 1.08995 * 109.47523 * 330.02446 * 1 2 3 29 29 H 1.08997 * 109.46616 * 210.02372 * 1 2 3 30 30 H 1.08003 * 126.06726 * 359.96848 * 3 2 1 31 31 H 1.08009 * 126.45842 * 180.02562 * 4 3 2 32 32 H 0.97002 * 120.00194 * 5.08432 * 8 6 5 33 33 H 1.09004 * 109.46856 * 299.99763 * 9 8 6 34 34 H 1.08996 * 109.47484 * 59.99475 * 9 8 6 35 35 H 1.09004 * 109.47101 * 299.99604 * 10 9 8 36 36 H 1.09003 * 109.46925 * 59.99898 * 10 9 8 37 37 H 1.08996 * 109.47169 * 299.99495 * 11 10 9 38 38 H 1.08993 * 109.47185 * 60.00201 * 11 10 9 39 39 H 0.96999 * 119.99940 * 0.02562 * 12 11 10 40 40 H 1.09004 * 109.46747 * 299.99742 * 15 13 12 41 41 H 1.08996 * 109.47476 * 59.99382 * 15 13 12 42 42 H 0.97002 * 120.00758 * 179.97438 * 20 19 17 43 43 H 1.08991 * 109.47905 * 95.46571 * 26 25 2 44 44 H 1.09006 * 109.47360 * 215.46766 * 26 25 2 45 45 H 1.09007 * 109.47006 * 335.46069 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6768 0.0006 5 6 3.6122 -0.7018 0.0015 6 6 4.7861 -1.5813 0.0029 7 8 4.6433 -2.7864 0.0950 8 7 6.0227 -1.0549 -0.0978 9 6 7.1873 -1.9367 -0.2087 10 6 8.4590 -1.0918 -0.3082 11 6 9.6754 -2.0128 -0.4233 12 7 10.8930 -1.2038 -0.5192 13 6 12.0943 -1.8047 -0.6300 14 8 12.1674 -3.0152 -0.6499 15 6 13.3470 -0.9726 -0.7280 16 16 14.7858 -2.0620 -0.8659 17 6 16.0710 -0.8606 -0.9629 18 1 15.8302 0.1917 -0.9298 19 6 17.3930 -1.2666 -1.0820 20 7 18.3530 -0.3691 -1.1550 21 14 17.8096 -3.0866 -1.1385 22 1 17.7992 -3.5532 -2.5484 23 1 19.1577 -3.3043 -0.5550 24 1 16.8030 -3.8493 -0.3573 25 7 2.2953 -1.1024 0.0060 26 6 1.8243 -2.4896 0.0141 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3634 0.8901 0.5134 29 1 -0.3632 -0.8898 0.5142 30 1 1.9545 2.1269 -0.0005 31 1 4.5025 1.3093 0.0011 32 1 6.1416 -0.0922 -0.0970 33 1 7.2442 -2.5760 0.6724 34 1 7.0910 -2.5555 -1.1008 35 1 8.4024 -0.4523 -1.1890 36 1 8.5551 -0.4735 0.5843 37 1 9.7319 -2.6520 0.4577 38 1 9.5795 -2.6314 -1.3156 39 1 10.8346 -0.2357 -0.5029 40 1 13.2902 -0.3330 -1.6088 41 1 13.4432 -0.3542 0.1644 42 1 19.2770 -0.6528 -1.2378 43 1 1.7998 -2.8710 -1.0066 44 1 2.5003 -3.0994 0.6136 45 1 0.8224 -2.5306 0.4415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703316657.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:27 Heat of formation + Delta-G solvation = -65.869825 kcal Electronic energy + Delta-G solvation = -24882.415133 eV Core-core repulsion = 21025.401888 eV Total energy + Delta-G solvation = -3857.013245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.43523 -40.67885 -40.19225 -37.24686 -35.64124 -34.66633 -33.90369 -32.98846 -32.30610 -30.61386 -28.08200 -27.80645 -27.42720 -25.82045 -23.07470 -22.84438 -21.78662 -21.27146 -20.15954 -19.84538 -18.70785 -17.76736 -17.55154 -17.20169 -17.10547 -16.81887 -16.74332 -16.21061 -16.11489 -15.61576 -15.35722 -15.09112 -14.88798 -14.58062 -14.43602 -14.18010 -14.11007 -13.91558 -13.57271 -13.43481 -13.35689 -13.21764 -13.00698 -12.97280 -12.86977 -12.65175 -12.60861 -12.57785 -12.08850 -11.86311 -11.17695 -11.16561 -11.00263 -10.52215 -10.23968 -10.13191 -9.71396 -9.01309 -8.98883 -8.51048 -6.21650 0.43297 0.99936 1.31785 1.47019 1.54037 1.57666 1.63294 1.74152 2.17394 2.25748 2.34610 2.44655 2.73627 2.87501 3.68789 3.82843 3.91108 3.93370 3.96652 3.97361 4.09304 4.25283 4.25664 4.29897 4.49384 4.50991 4.51802 4.57684 4.60569 4.72554 4.77690 4.79668 5.07882 5.09260 5.10334 5.17672 5.23737 5.33676 5.41438 5.71340 5.86511 6.02877 6.12128 6.27510 6.47193 6.50415 6.94547 7.12836 7.21562 8.61275 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.042821 B = 0.001366 C = 0.001327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.723496 B =20498.178259 C =21101.746262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.042 3.958 3 C -0.223 4.223 4 C -0.129 4.129 5 C -0.093 4.093 6 C 0.584 3.416 7 O -0.590 6.590 8 N -0.704 5.704 9 C 0.128 3.872 10 C -0.123 4.123 11 C 0.122 3.878 12 N -0.710 5.710 13 C 0.533 3.467 14 O -0.565 6.565 15 C -0.111 4.111 16 S -0.180 6.180 17 C -0.529 4.529 18 H 0.064 0.936 19 C 0.047 3.953 20 N -0.917 5.917 21 Si 0.913 3.087 22 H -0.263 1.263 23 H -0.259 1.259 24 H -0.238 1.238 25 N -0.420 5.420 26 C 0.065 3.935 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.162 0.838 31 H 0.168 0.832 32 H 0.418 0.582 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.420 0.580 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.277 0.723 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -39.933 5.481 2.842 40.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.246 4.246 4 C -0.156 4.156 5 C -0.205 4.205 6 C 0.373 3.627 7 O -0.472 6.472 8 N -0.356 5.356 9 C 0.003 3.997 10 C -0.161 4.161 11 C -0.002 4.002 12 N -0.364 5.364 13 C 0.318 3.682 14 O -0.444 6.444 15 C -0.262 4.262 16 S 0.046 5.954 17 C -0.676 4.676 18 H 0.082 0.918 19 C -0.158 4.158 20 N -0.555 5.555 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.184 1.184 24 H -0.162 1.162 25 N -0.094 5.094 26 C -0.076 4.076 27 H 0.103 0.897 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.180 0.820 31 H 0.186 0.814 32 H 0.256 0.744 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.257 0.743 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -39.814 2.292 2.847 39.981 hybrid contribution 0.900 1.531 -0.101 1.779 sum -38.913 3.823 2.747 39.197 Atomic orbital electron populations 1.20541 0.85410 1.04706 1.03942 1.21250 0.95414 0.85460 1.05450 1.21006 0.92378 0.98881 1.12335 1.21715 0.99211 0.91289 1.03353 1.20040 0.84466 0.94196 1.21826 1.17253 0.83289 0.86458 0.75691 1.90778 1.86957 1.16641 1.52869 1.45430 1.04548 1.11474 1.74165 1.21161 0.83534 0.92798 1.02172 1.21810 0.90458 0.98169 1.05706 1.21221 0.82855 0.94080 1.02062 1.45646 1.04584 1.11390 1.74763 1.19986 0.85046 0.87769 0.75357 1.90703 1.87156 1.15998 1.50534 1.23275 0.93655 1.01680 1.07559 1.84763 0.99676 1.14044 1.96908 1.22465 0.93388 0.94059 1.57707 0.91805 1.25531 0.95134 1.02229 0.92913 1.70008 1.00933 1.35703 1.48839 0.85889 0.79819 0.80445 0.80354 1.18745 1.18352 1.16164 1.44000 1.04710 1.07423 1.53272 1.22268 1.02286 0.78920 1.04081 0.89670 0.88266 0.90697 0.82009 0.81422 0.74409 0.91898 0.91829 0.88192 0.88252 0.92128 0.92097 0.74263 0.86624 0.86594 0.91380 0.90581 0.90169 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.41 10.07 71.24 0.72 0.30 16 2 C 0.04 0.50 6.87 41.35 0.28 0.79 16 3 C -0.22 -2.60 10.71 22.01 0.24 -2.37 16 4 C -0.13 -1.63 10.35 22.57 0.23 -1.40 16 5 C -0.09 -1.63 6.89 40.35 0.28 -1.35 16 6 C 0.58 11.66 7.77 86.45 0.67 12.33 16 7 O -0.59 -16.00 14.78 -4.34 -0.06 -16.06 16 8 N -0.70 -9.16 5.54 -467.07 -2.59 -11.75 16 9 C 0.13 1.74 5.68 86.38 0.49 2.23 16 10 C -0.12 -1.13 5.44 30.59 0.17 -0.96 16 11 C 0.12 2.17 5.67 86.38 0.49 2.66 16 12 N -0.71 -14.63 5.56 -463.05 -2.57 -17.20 16 13 C 0.53 17.52 7.85 87.66 0.69 18.21 16 14 O -0.57 -23.88 15.86 -3.05 -0.05 -23.93 16 15 C -0.11 -4.01 6.16 71.24 0.44 -3.57 16 16 S -0.18 -9.05 18.55 -56.49 -1.05 -10.10 16 17 C -0.53 -30.54 10.04 67.96 0.68 -29.86 16 18 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 19 C 0.05 2.77 5.50 84.86 0.47 3.24 16 20 N -0.92 -55.59 13.97 21.65 0.30 -55.29 16 21 Si 0.91 44.98 27.74 68.60 1.90 46.88 16 22 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.24 -11.73 6.74 99.48 0.67 -11.06 16 25 N -0.42 -6.68 3.16 -519.71 -1.64 -8.33 16 26 C 0.07 0.84 10.32 127.77 1.32 2.16 16 27 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.07 0.23 6.91 -2.39 -0.02 0.21 16 30 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 31 H 0.17 1.07 7.45 -2.91 -0.02 1.04 16 32 H 0.42 2.78 7.37 -92.71 -0.68 2.09 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.42 5.47 8.47 -92.71 -0.79 4.69 16 40 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 41 H 0.12 3.79 8.14 -2.40 -0.02 3.77 16 42 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 43 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.08 1.39 6.55 -2.38 -0.02 1.37 16 45 H 0.11 0.70 6.80 -2.38 -0.02 0.69 16 Total: -1.00 -84.25 392.95 0.92 -83.33 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -0.49 Total: 10.05 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 7.16 Total: 2.40 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -6.50 Total: -92.56 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -0.11 Total: -40.00 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.90 Total: 46.88 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.10 kcal Total: -84.25 0.92 -83.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703316657.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.462 kcal (2) G-P(sol) polarization free energy of solvation -84.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds