Wall clock time and date at job start Tue Mar 31 2020 23:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39835 * 126.46053 * 2 1 4 4 C 1.35452 * 107.86561 * 180.25952 * 3 2 1 5 5 N 1.35533 * 108.87241 * 359.74285 * 4 3 2 6 6 H 0.96998 * 125.67879 * 179.97438 * 5 4 3 7 7 C 1.37656 * 108.64324 * 359.97438 * 5 4 3 8 8 C 1.46677 * 126.23022 * 179.97438 * 7 5 4 9 9 O 1.21702 * 119.99433 * 180.02562 * 8 7 5 10 10 N 1.34771 * 120.00441 * 0.02562 * 8 7 5 11 11 C 1.46500 * 120.00026 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47129 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47217 * 305.00580 * 12 11 10 14 14 C 1.53008 * 109.46816 * 65.00299 * 12 11 10 15 15 C 1.52996 * 109.47336 * 184.99981 * 12 11 10 16 16 N 1.46498 * 109.47059 * 175.00083 * 15 12 11 17 17 C 1.34777 * 119.99828 * 179.72339 * 16 15 12 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 15 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 15 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47098 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47081 * 120.00118 * 25 23 21 28 28 H 1.48496 * 109.47496 * 240.00528 * 25 23 21 29 29 H 1.08999 * 109.47321 * 270.18505 * 1 2 3 30 30 H 1.08999 * 109.47003 * 30.18467 * 1 2 3 31 31 H 1.08998 * 109.47372 * 150.17803 * 1 2 3 32 32 H 1.07997 * 126.07004 * 0.02562 * 3 2 1 33 33 H 1.08002 * 125.56676 * 179.71405 * 4 3 2 34 34 H 0.97004 * 119.99945 * 359.97438 * 10 8 7 35 35 H 1.09005 * 109.47000 * 60.00500 * 11 10 8 36 36 H 1.08996 * 109.47381 * 300.00104 * 11 10 8 37 37 H 1.09000 * 109.46973 * 59.99593 * 14 12 11 38 38 H 1.08995 * 109.47053 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.46930 * 299.99894 * 14 12 11 40 40 H 1.09004 * 109.47066 * 55.00351 * 15 12 11 41 41 H 1.08994 * 109.46974 * 295.00498 * 15 12 11 42 42 H 0.97001 * 120.00384 * 0.02562 * 16 15 12 43 43 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 44 44 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 45 45 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3379 1.1246 0.0000 4 6 3.6217 0.6927 -0.0058 5 7 3.6283 -0.6626 -0.0038 6 1 4.4190 -1.2245 -0.0072 7 6 2.3262 -1.1090 0.0041 8 6 1.8898 -2.5093 0.0082 9 8 0.7025 -2.7766 0.0148 10 7 2.8035 -3.5000 0.0047 11 6 2.3675 -4.8986 0.0093 12 6 3.5929 -5.8148 0.0033 13 1 4.2319 -5.5614 -0.8427 14 6 4.3742 -5.6300 1.3058 15 6 3.1402 -7.2712 -0.1176 16 7 4.3141 -8.1386 -0.2434 17 6 4.1573 -9.4723 -0.3581 18 8 3.0442 -9.9539 -0.3622 19 6 5.3650 -10.3653 -0.4813 20 16 4.8296 -12.0888 -0.6184 21 6 6.3956 -12.8863 -0.7463 22 1 7.3030 -12.3011 -0.7251 23 6 6.4630 -14.2669 -0.8733 24 7 5.3570 -14.9803 -0.8987 25 14 8.1231 -15.1123 -1.0096 26 1 9.2029 -14.0943 -0.9562 27 1 8.2867 -16.0664 0.1167 28 1 8.1996 -15.8485 -2.2969 29 1 -0.3634 0.0033 1.0276 30 1 -0.3633 0.8883 -0.5167 31 1 -0.3634 -0.8915 -0.5110 32 1 2.0137 2.1548 0.0004 33 1 4.4973 1.3251 -0.0117 34 1 3.7498 -3.2869 -0.0009 35 1 1.7640 -5.0940 -0.8771 36 1 1.7738 -5.0912 0.9029 37 1 3.7352 -5.8833 2.1518 38 1 5.2474 -6.2824 1.3014 39 1 4.6967 -4.5924 1.3920 40 1 2.5092 -7.3836 -0.9993 41 1 2.5752 -7.5511 0.7715 42 1 5.2044 -7.7535 -0.2398 43 1 5.9317 -10.0893 -1.3705 44 1 5.9943 -10.2490 0.4011 45 1 5.4042 -15.9449 -0.9877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704759899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:55 Heat of formation + Delta-G solvation = -45.328191 kcal Electronic energy + Delta-G solvation = -25313.756447 eV Core-core repulsion = 21457.633954 eV Total energy + Delta-G solvation = -3856.122492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.79089 -39.73833 -39.17572 -37.11618 -34.71000 -33.03278 -32.45549 -32.36155 -30.24667 -29.37632 -27.67841 -26.93483 -25.67824 -25.24059 -22.57817 -21.12104 -21.07827 -20.45001 -19.52977 -19.02948 -17.84419 -16.73362 -16.43033 -16.16008 -16.01439 -15.55252 -15.43119 -14.88046 -14.82699 -14.33158 -14.24007 -14.10334 -13.89189 -13.71214 -13.36929 -13.17808 -13.01450 -12.98882 -12.92879 -12.63877 -12.58772 -11.98898 -11.95109 -11.64440 -11.44832 -11.31150 -11.09088 -11.04359 -10.78145 -10.34588 -9.83121 -9.58514 -9.45553 -9.23271 -9.10187 -8.94490 -8.60268 -8.25622 -6.52476 -6.24005 -3.94731 1.02567 2.28804 2.55872 2.65565 2.98795 3.03494 3.06015 3.19620 3.26558 3.30912 3.67790 4.17941 4.27449 4.36273 4.44568 4.48541 4.54951 4.76513 4.88055 4.96069 5.09510 5.11273 5.23829 5.28846 5.36893 5.37346 5.48308 5.50581 5.55911 5.57992 5.62172 5.75496 5.80885 5.83773 5.85824 5.91923 6.03485 6.09757 6.26406 6.50706 6.54164 6.85711 7.04891 7.57380 7.63906 7.76829 8.32966 8.56808 9.21408 10.83495 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035256 B = 0.001492 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.010981 B =18764.040209 C =19383.286260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.071 4.071 3 C -0.213 4.213 4 C 0.027 3.973 5 N -0.542 5.542 6 H 0.415 0.585 7 C -0.064 4.064 8 C 0.588 3.412 9 O -0.523 6.523 10 N -0.731 5.731 11 C 0.127 3.873 12 C -0.115 4.115 13 H 0.084 0.916 14 C -0.150 4.150 15 C 0.129 3.871 16 N -0.738 5.738 17 C 0.531 3.469 18 O -0.515 6.515 19 C -0.153 4.153 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.172 0.828 34 H 0.393 0.607 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.273 33.890 2.747 34.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 C -0.237 4.237 4 C -0.109 4.109 5 N -0.139 5.139 6 H 0.252 0.748 7 C -0.176 4.176 8 C 0.376 3.624 9 O -0.398 6.398 10 N -0.383 5.383 11 C 0.004 3.996 12 C -0.134 4.134 13 H 0.102 0.898 14 C -0.207 4.207 15 C 0.004 3.996 16 N -0.393 5.393 17 C 0.317 3.683 18 O -0.389 6.389 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.205 1.205 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.161 0.839 33 H 0.189 0.811 34 H 0.227 0.773 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.009 32.534 2.730 32.787 hybrid contribution 3.880 0.142 -0.076 3.883 sum 0.871 32.676 2.654 32.795 Atomic orbital electron populations 1.20366 0.89185 1.03024 1.02340 1.20006 0.96007 0.90772 1.01158 1.20844 0.91837 0.98925 1.12090 1.22033 0.99650 0.82902 1.06277 1.41937 1.07075 1.07328 1.57530 0.74790 1.20213 0.83773 0.93485 1.20120 1.17033 0.85859 0.82980 0.76512 1.90846 1.15929 1.83208 1.49858 1.45857 1.09216 1.06540 1.76639 1.21333 0.96084 0.78703 1.03508 1.21603 0.97136 0.94930 0.99753 0.89788 1.21897 1.00650 1.01365 0.96829 1.21159 0.88646 0.87011 1.02798 1.45963 1.09232 1.06679 1.77460 1.20314 0.91034 0.81672 0.75260 1.90716 1.26269 1.74299 1.47647 1.23528 0.98701 1.03353 1.04808 1.85429 1.11683 0.90500 1.95733 1.22908 0.92673 0.94532 1.58321 0.90886 1.24996 0.97710 0.96318 0.94554 1.70026 1.26849 1.06736 1.46610 0.86114 0.82185 0.79213 0.77955 1.19650 1.20553 1.20548 0.91418 0.91919 0.90083 0.83877 0.81117 0.77350 0.90556 0.90510 0.91753 0.91779 0.92854 0.91146 0.91076 0.76894 0.89255 0.89256 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 9.83 36.00 0.35 -0.42 16 2 C -0.07 -0.62 6.21 -104.16 -0.65 -1.27 16 3 C -0.21 -1.40 10.76 -39.98 -0.43 -1.83 16 4 C 0.03 0.13 11.89 -16.91 -0.20 -0.08 16 5 N -0.54 -2.62 5.99 -9.39 -0.06 -2.68 16 6 H 0.42 0.70 8.19 -40.82 -0.33 0.37 16 7 C -0.06 -0.53 7.06 -81.98 -0.58 -1.11 16 8 C 0.59 5.70 7.79 -12.86 -0.10 5.60 16 9 O -0.52 -6.92 14.81 5.19 0.08 -6.84 16 10 N -0.73 -4.88 5.28 -61.62 -0.33 -5.20 16 11 C 0.13 0.96 5.06 -4.04 -0.02 0.94 16 12 C -0.12 -0.75 2.46 -90.62 -0.22 -0.97 16 13 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 14 C -0.15 -0.86 8.94 37.16 0.33 -0.53 16 15 C 0.13 1.33 5.06 -4.04 -0.02 1.31 16 16 N -0.74 -8.94 5.28 -60.30 -0.32 -9.26 16 17 C 0.53 9.57 7.85 -10.98 -0.09 9.48 16 18 O -0.52 -11.55 15.86 5.55 0.09 -11.46 16 19 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 20 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 21 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 25 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.83 6.49 -51.93 -0.34 0.49 16 32 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 33 H 0.17 0.21 8.06 -52.49 -0.42 -0.21 16 34 H 0.39 1.48 6.78 -40.82 -0.28 1.20 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.37 7.18 -51.93 -0.37 0.00 16 39 H 0.05 0.22 7.18 -51.93 -0.37 -0.16 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.40 3.57 7.65 -40.82 -0.31 3.26 16 43 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 44 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 393.07 15.07 5.92 5.92 Total: -1.00 -37.95 393.07 -8.94 -46.89 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.62 Total: 0.08 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.20 Total: -4.52 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.03 Total: -42.44 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.16 Total: -18.31 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.95 -8.94 -46.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704759899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.559 kcal (2) G-P(sol) polarization free energy of solvation -37.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds