Wall clock time and date at job start Tue Mar 31 2020 23:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39835 * 126.46053 * 2 1 4 4 C 1.35452 * 107.86561 * 180.25952 * 3 2 1 5 5 N 1.35533 * 108.87241 * 359.74285 * 4 3 2 6 6 H 0.96998 * 125.67879 * 179.97438 * 5 4 3 7 7 C 1.37656 * 108.64324 * 359.97438 * 5 4 3 8 8 C 1.46677 * 126.23022 * 179.97438 * 7 5 4 9 9 O 1.21702 * 119.99433 * 180.02562 * 8 7 5 10 10 N 1.34771 * 120.00441 * 0.02562 * 8 7 5 11 11 C 1.46500 * 120.00026 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47129 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47217 * 305.00580 * 12 11 10 14 14 C 1.53008 * 109.46816 * 65.00299 * 12 11 10 15 15 C 1.52996 * 109.47336 * 184.99981 * 12 11 10 16 16 N 1.46498 * 109.47059 * 175.00083 * 15 12 11 17 17 C 1.34777 * 119.99828 * 179.72339 * 16 15 12 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 15 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 15 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47098 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47081 * 120.00118 * 25 23 21 28 28 H 1.48496 * 109.47496 * 240.00528 * 25 23 21 29 29 H 1.08999 * 109.47321 * 270.18505 * 1 2 3 30 30 H 1.08999 * 109.47003 * 30.18467 * 1 2 3 31 31 H 1.08998 * 109.47372 * 150.17803 * 1 2 3 32 32 H 1.07997 * 126.07004 * 0.02562 * 3 2 1 33 33 H 1.08002 * 125.56676 * 179.71405 * 4 3 2 34 34 H 0.97004 * 119.99945 * 359.97438 * 10 8 7 35 35 H 1.09005 * 109.47000 * 60.00500 * 11 10 8 36 36 H 1.08996 * 109.47381 * 300.00104 * 11 10 8 37 37 H 1.09000 * 109.46973 * 59.99593 * 14 12 11 38 38 H 1.08995 * 109.47053 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.46930 * 299.99894 * 14 12 11 40 40 H 1.09004 * 109.47066 * 55.00351 * 15 12 11 41 41 H 1.08994 * 109.46974 * 295.00498 * 15 12 11 42 42 H 0.97001 * 120.00384 * 0.02562 * 16 15 12 43 43 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 44 44 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 45 45 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3379 1.1246 0.0000 4 6 3.6217 0.6927 -0.0058 5 7 3.6283 -0.6626 -0.0038 6 1 4.4190 -1.2245 -0.0072 7 6 2.3262 -1.1090 0.0041 8 6 1.8898 -2.5093 0.0082 9 8 0.7025 -2.7766 0.0148 10 7 2.8035 -3.5000 0.0047 11 6 2.3675 -4.8986 0.0093 12 6 3.5929 -5.8148 0.0033 13 1 4.2319 -5.5614 -0.8427 14 6 4.3742 -5.6300 1.3058 15 6 3.1402 -7.2712 -0.1176 16 7 4.3141 -8.1386 -0.2434 17 6 4.1573 -9.4723 -0.3581 18 8 3.0442 -9.9539 -0.3622 19 6 5.3650 -10.3653 -0.4813 20 16 4.8296 -12.0888 -0.6184 21 6 6.3956 -12.8863 -0.7463 22 1 7.3030 -12.3011 -0.7251 23 6 6.4630 -14.2669 -0.8733 24 7 5.3570 -14.9803 -0.8987 25 14 8.1231 -15.1123 -1.0096 26 1 9.2029 -14.0943 -0.9562 27 1 8.2867 -16.0664 0.1167 28 1 8.1996 -15.8485 -2.2969 29 1 -0.3634 0.0033 1.0276 30 1 -0.3633 0.8883 -0.5167 31 1 -0.3634 -0.8915 -0.5110 32 1 2.0137 2.1548 0.0004 33 1 4.4973 1.3251 -0.0117 34 1 3.7498 -3.2869 -0.0009 35 1 1.7640 -5.0940 -0.8771 36 1 1.7738 -5.0912 0.9029 37 1 3.7352 -5.8833 2.1518 38 1 5.2474 -6.2824 1.3014 39 1 4.6967 -4.5924 1.3920 40 1 2.5092 -7.3836 -0.9993 41 1 2.5752 -7.5511 0.7715 42 1 5.2044 -7.7535 -0.2398 43 1 5.9317 -10.0893 -1.3705 44 1 5.9943 -10.2490 0.4011 45 1 5.4042 -15.9449 -0.9877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704759899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:54 Heat of formation + Delta-G solvation = -74.019351 kcal Electronic energy + Delta-G solvation = -25315.000589 eV Core-core repulsion = 21457.633954 eV Total energy + Delta-G solvation = -3857.366635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.28857 -40.76955 -40.16652 -37.99628 -35.67512 -34.58433 -33.75075 -33.17014 -31.03833 -30.51174 -28.25909 -27.79352 -27.50109 -26.25332 -23.19663 -21.86545 -21.72111 -21.54758 -20.23530 -19.78957 -19.48803 -17.79152 -17.62990 -16.91970 -16.88381 -16.77065 -16.55584 -16.44637 -15.78035 -15.68547 -14.98502 -14.90990 -14.78518 -14.57587 -14.39823 -14.26716 -13.96190 -13.83138 -13.66297 -13.59729 -13.33193 -13.17510 -13.15809 -12.91388 -12.60999 -12.55434 -12.23998 -12.19871 -11.91158 -11.70565 -11.15922 -11.13835 -10.96095 -10.28003 -10.26377 -10.12951 -9.69404 -9.11255 -8.66815 -8.34747 -6.12901 0.44805 1.26972 1.41672 1.47286 1.57898 1.61492 1.83309 1.94366 2.23729 2.27250 2.32216 2.38871 2.99730 3.32191 3.63805 3.74230 3.81288 3.92214 4.03368 4.25282 4.27616 4.30559 4.35517 4.39951 4.48040 4.51590 4.71900 4.74419 4.85029 4.87203 4.88046 4.91516 5.01225 5.10071 5.16584 5.25743 5.34759 5.42130 5.43106 5.45831 5.76641 5.97218 6.20090 6.42946 6.50537 6.63602 7.06791 7.11684 7.25053 8.74755 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035256 B = 0.001492 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.010981 B =18764.040209 C =19383.286260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.097 4.097 3 C -0.234 4.234 4 C 0.051 3.949 5 N -0.527 5.527 6 H 0.431 0.569 7 C -0.088 4.088 8 C 0.584 3.416 9 O -0.570 6.570 10 N -0.713 5.713 11 C 0.130 3.870 12 C -0.094 4.094 13 H 0.108 0.892 14 C -0.150 4.150 15 C 0.126 3.874 16 N -0.707 5.707 17 C 0.532 3.468 18 O -0.568 6.568 19 C -0.128 4.128 20 S -0.156 6.156 21 C -0.545 4.545 22 H 0.084 0.916 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 1.000 3.000 26 H -0.255 1.255 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.156 0.844 33 H 0.214 0.786 34 H 0.410 0.590 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.418 0.582 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.753 36.516 2.781 36.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.258 4.258 4 C -0.086 4.086 5 N -0.125 5.125 6 H 0.272 0.728 7 C -0.201 4.201 8 C 0.373 3.627 9 O -0.450 6.450 10 N -0.365 5.365 11 C 0.006 3.994 12 C -0.113 4.113 13 H 0.127 0.873 14 C -0.208 4.208 15 C 0.001 3.999 16 N -0.362 5.362 17 C 0.318 3.682 18 O -0.446 6.446 19 C -0.280 4.280 20 S 0.071 5.929 21 C -0.693 4.693 22 H 0.103 0.897 23 C -0.192 4.192 24 N -0.549 5.549 25 Si 0.821 3.179 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.200 1.200 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.174 0.826 33 H 0.230 0.770 34 H 0.247 0.753 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.255 0.745 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.107 35.210 2.769 35.336 hybrid contribution 2.610 -0.485 -0.071 2.656 sum 3.717 34.725 2.699 35.028 Atomic orbital electron populations 1.20297 0.90002 1.02454 1.01934 1.20283 0.96158 0.92196 1.02001 1.21114 0.92497 0.99048 1.13114 1.22686 1.00268 0.82810 1.02833 1.41910 1.06398 1.07815 1.56352 0.72830 1.19989 0.85383 0.92551 1.22167 1.17320 0.85512 0.84005 0.75873 1.90821 1.17943 1.83983 1.52226 1.45627 1.09809 1.05573 1.75490 1.21205 0.96426 0.79428 1.02358 1.21422 0.96820 0.91591 1.01478 0.87348 1.21923 1.00294 1.03107 0.95450 1.21269 0.87825 0.88987 1.01786 1.45634 1.11041 1.04701 1.74842 1.20094 0.89607 0.83294 0.75220 1.90708 1.27832 1.75593 1.50491 1.23365 0.99623 0.98134 1.06837 1.85644 1.13895 0.97250 1.96119 1.23247 0.92757 0.95179 1.58113 0.89742 1.26138 1.02088 0.97145 0.93821 1.70194 1.29695 1.07129 1.47851 0.84895 0.76923 0.78054 0.78001 1.17867 1.20025 1.20026 0.91819 0.90494 0.92527 0.82591 0.76982 0.75287 0.91874 0.91842 0.93057 0.91171 0.90435 0.92251 0.92340 0.74456 0.87032 0.87010 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.83 71.23 0.70 -0.92 16 2 C -0.10 -1.68 6.21 -19.57 -0.12 -1.80 16 3 C -0.23 -2.62 10.76 22.01 0.24 -2.38 16 4 C 0.05 0.29 11.89 83.48 0.99 1.28 16 5 N -0.53 -3.52 5.99 -183.62 -1.10 -4.62 16 6 H 0.43 -0.23 8.19 -92.71 -0.76 -0.99 16 7 C -0.09 -1.40 7.06 40.35 0.28 -1.11 16 8 C 0.58 11.32 7.79 86.45 0.67 12.00 16 9 O -0.57 -16.08 14.81 -4.35 -0.06 -16.14 16 10 N -0.71 -8.51 5.28 -467.07 -2.47 -10.98 16 11 C 0.13 1.88 5.06 86.38 0.44 2.32 16 12 C -0.09 -1.00 2.46 -10.79 -0.03 -1.03 16 13 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 14 C -0.15 -1.27 8.94 71.98 0.64 -0.62 16 15 C 0.13 2.48 5.06 86.38 0.44 2.92 16 16 N -0.71 -15.69 5.28 -463.07 -2.45 -18.14 16 17 C 0.53 18.80 7.85 87.66 0.69 19.49 16 18 O -0.57 -26.11 15.86 -3.04 -0.05 -26.16 16 19 C -0.13 -4.87 6.16 71.24 0.44 -4.43 16 20 S -0.16 -8.60 20.57 -56.49 -1.16 -9.76 16 21 C -0.55 -30.74 9.50 67.96 0.65 -30.09 16 22 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 23 C 0.01 0.72 5.49 84.86 0.47 1.18 16 24 N -0.91 -55.90 13.22 21.65 0.29 -55.61 16 25 Si 1.00 43.08 29.55 68.60 2.03 45.11 16 26 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.29 6.49 -2.39 -0.02 1.27 16 32 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 33 H 0.21 -0.64 8.06 -2.91 -0.02 -0.66 16 34 H 0.41 1.83 6.78 -92.71 -0.63 1.20 16 35 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.07 0.54 7.18 -2.39 -0.02 0.53 16 39 H 0.08 0.31 7.18 -2.39 -0.02 0.29 16 40 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.42 5.96 7.65 -92.71 -0.71 5.25 16 43 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 44 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 45 H 0.27 15.36 8.31 -92.72 -0.77 14.59 16 Total: -1.00 -88.30 393.07 0.46 -87.84 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -1.06 Total: 11.67 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 6.50 Total: -3.21 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -5.73 Total: -89.35 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -0.11 Total: -42.30 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -88.30 0.46 -87.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704759899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.823 kcal (2) G-P(sol) polarization free energy of solvation -88.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds