Wall clock time and date at job start Tue Mar 31 2020 23:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39839 * 126.45902 * 2 1 4 4 C 1.35446 * 107.86537 * 180.26528 * 3 2 1 5 5 N 1.35536 * 108.87560 * 359.73686 * 4 3 2 6 6 H 0.96996 * 125.68148 * 179.97438 * 5 4 3 7 7 C 1.37655 * 108.63894 * 0.02562 * 5 4 3 8 8 C 1.46674 * 126.23121 * 179.97438 * 7 5 4 9 9 O 1.21691 * 120.00191 * 180.02562 * 8 7 5 10 10 N 1.34784 * 120.00101 * 0.02727 * 8 7 5 11 11 C 1.46493 * 119.99864 * 179.72540 * 10 8 7 12 12 C 1.53001 * 109.47084 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.47100 * 54.99323 * 12 11 10 14 14 C 1.53007 * 109.46806 * 294.99611 * 12 11 10 15 15 C 1.52997 * 109.47519 * 175.00001 * 12 11 10 16 16 N 1.46499 * 109.47484 * 184.99863 * 15 12 11 17 17 C 1.34777 * 120.00236 * 179.97438 * 16 15 12 18 18 O 1.21287 * 119.99690 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99904 * 179.97438 * 17 16 15 20 20 S 1.81005 * 109.46812 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99859 * 180.02562 * 20 19 17 22 22 H 1.08001 * 120.00126 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00261 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99686 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00264 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47064 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47237 * 120.00016 * 25 23 21 28 28 H 1.48506 * 109.46598 * 240.00148 * 25 23 21 29 29 H 1.08999 * 109.46926 * 270.18445 * 1 2 3 30 30 H 1.09001 * 109.47280 * 30.18289 * 1 2 3 31 31 H 1.08997 * 109.46831 * 150.18077 * 1 2 3 32 32 H 1.07999 * 126.06722 * 0.02562 * 3 2 1 33 33 H 1.08000 * 125.56719 * 179.72316 * 4 3 2 34 34 H 0.97000 * 119.99339 * 359.97438 * 10 8 7 35 35 H 1.09007 * 109.47196 * 299.99538 * 11 10 8 36 36 H 1.09006 * 109.47678 * 59.99732 * 11 10 8 37 37 H 1.08996 * 109.46781 * 179.97438 * 14 12 11 38 38 H 1.08999 * 109.47056 * 299.99739 * 14 12 11 39 39 H 1.08995 * 109.47177 * 60.00033 * 14 12 11 40 40 H 1.09007 * 109.47118 * 304.99691 * 15 12 11 41 41 H 1.09002 * 109.47058 * 64.99320 * 15 12 11 42 42 H 0.97000 * 119.99692 * 359.97438 * 16 15 12 43 43 H 1.09003 * 109.47121 * 299.99901 * 19 17 16 44 44 H 1.09000 * 109.46909 * 60.00188 * 19 17 16 45 45 H 0.97000 * 120.00033 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6217 0.6928 -0.0060 5 7 3.6284 -0.6625 -0.0038 6 1 4.4191 -1.2244 -0.0074 7 6 2.3263 -1.1089 0.0031 8 6 1.8899 -2.5092 0.0068 9 8 0.7027 -2.7766 0.0125 10 7 2.8037 -3.4999 0.0041 11 6 2.3679 -4.8985 0.0139 12 6 3.5933 -5.8146 0.0090 13 1 4.2436 -5.5561 0.8447 14 6 4.3568 -5.6379 -1.3051 15 6 3.1424 -7.2703 0.1450 16 7 4.3178 -8.1370 0.2603 17 6 4.1626 -9.4693 0.3913 18 8 3.0496 -9.9509 0.4134 19 6 5.3718 -10.3609 0.5093 20 16 4.8383 -12.0830 0.6703 21 6 6.4057 -12.8791 0.7878 22 1 7.3128 -12.2941 0.7500 23 6 6.4748 -14.2582 0.9291 24 7 5.3693 -14.9712 0.9757 25 14 8.1366 -15.1022 1.0544 26 1 9.2156 -14.0849 0.9767 27 1 8.2287 -15.8243 2.3487 28 1 8.2864 -16.0684 -0.0634 29 1 -0.3633 0.0033 1.0277 30 1 -0.3634 0.8883 -0.5167 31 1 -0.3633 -0.8916 -0.5110 32 1 2.0137 2.1549 0.0004 33 1 4.4972 1.3252 -0.0117 34 1 3.7500 -3.2867 -0.0008 35 1 1.7763 -5.0884 0.9096 36 1 1.7620 -5.0966 -0.8703 37 1 5.2300 -6.2902 -1.3084 38 1 3.7065 -5.8965 -2.1407 39 1 4.6781 -4.6009 -1.4020 40 1 2.5234 -7.3773 1.0359 41 1 2.5654 -7.5556 -0.7347 42 1 5.2079 -7.7519 0.2422 43 1 5.9902 -10.2542 -0.3820 44 1 5.9493 -10.0753 1.3886 45 1 5.4175 -15.9350 1.0741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704759900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:58 Heat of formation + Delta-G solvation = -74.021715 kcal Electronic energy + Delta-G solvation = -25314.859188 eV Core-core repulsion = 21457.492451 eV Total energy + Delta-G solvation = -3857.366737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.28886 -40.76891 -40.16724 -37.99657 -35.67492 -34.58440 -33.75056 -33.16989 -31.03862 -30.51200 -28.25861 -27.79324 -27.50081 -26.25281 -23.19668 -21.86490 -21.72195 -21.54753 -20.23506 -19.78973 -19.48778 -17.79144 -17.62963 -16.91736 -16.88367 -16.77199 -16.55131 -16.45097 -15.78523 -15.68107 -14.99615 -14.90054 -14.78809 -14.57907 -14.39485 -14.25354 -13.96108 -13.84179 -13.65804 -13.60029 -13.33506 -13.17470 -13.15788 -12.91397 -12.60968 -12.55383 -12.23772 -12.19997 -11.91037 -11.70571 -11.15938 -11.13975 -10.96067 -10.27931 -10.26373 -10.12949 -9.69409 -9.11276 -8.66822 -8.34738 -6.12910 0.44801 1.26954 1.41682 1.47280 1.57901 1.61461 1.83311 1.94390 2.23743 2.27245 2.32220 2.38878 2.99751 3.32197 3.63828 3.74236 3.81320 3.92226 4.03370 4.25265 4.27616 4.30569 4.35520 4.39958 4.48031 4.51560 4.71894 4.74457 4.85160 4.87151 4.87938 4.91599 5.01220 5.10109 5.16601 5.25815 5.34804 5.42118 5.43104 5.45830 5.76645 5.97209 6.20076 6.42945 6.50531 6.63610 7.06801 7.11697 7.25045 8.74756 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035196 B = 0.001492 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.362085 B =18762.606092 C =19380.303263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.097 4.097 3 C -0.234 4.234 4 C 0.051 3.949 5 N -0.527 5.527 6 H 0.431 0.569 7 C -0.088 4.088 8 C 0.584 3.416 9 O -0.570 6.570 10 N -0.713 5.713 11 C 0.130 3.870 12 C -0.094 4.094 13 H 0.108 0.892 14 C -0.150 4.150 15 C 0.126 3.874 16 N -0.707 5.707 17 C 0.532 3.468 18 O -0.568 6.568 19 C -0.128 4.128 20 S -0.156 6.156 21 C -0.545 4.545 22 H 0.084 0.916 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 1.000 3.000 26 H -0.255 1.255 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.156 0.844 33 H 0.214 0.786 34 H 0.410 0.590 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.418 0.582 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.713 36.492 -3.147 36.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.258 4.258 4 C -0.086 4.086 5 N -0.125 5.125 6 H 0.272 0.728 7 C -0.201 4.201 8 C 0.373 3.627 9 O -0.450 6.450 10 N -0.365 5.365 11 C 0.006 3.994 12 C -0.113 4.113 13 H 0.126 0.874 14 C -0.208 4.208 15 C 0.001 3.999 16 N -0.362 5.362 17 C 0.318 3.682 18 O -0.446 6.446 19 C -0.280 4.280 20 S 0.071 5.929 21 C -0.693 4.693 22 H 0.103 0.897 23 C -0.192 4.192 24 N -0.549 5.549 25 Si 0.821 3.179 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.200 1.200 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.174 0.826 33 H 0.230 0.770 34 H 0.247 0.753 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.255 0.745 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.068 35.185 -3.102 35.338 hybrid contribution 2.611 -0.483 0.078 2.656 sum 3.678 34.702 -3.024 35.027 Atomic orbital electron populations 1.20299 0.89999 1.02468 1.01923 1.20285 0.96159 0.92196 1.02001 1.21115 0.92497 0.99049 1.13112 1.22684 1.00268 0.82810 1.02834 1.41910 1.06397 1.07814 1.56357 0.72829 1.19988 0.85385 0.92551 1.22164 1.17320 0.85510 0.84005 0.75872 1.90817 1.17952 1.83974 1.52215 1.45629 1.09809 1.05572 1.75500 1.21204 0.96429 0.79431 1.02351 1.21421 0.96891 0.91608 1.01390 0.87353 1.21921 1.00407 1.03116 0.95321 1.21271 0.87791 0.89007 1.01800 1.45634 1.10981 1.04834 1.74768 1.20094 0.89621 0.83280 0.75220 1.90709 1.27874 1.75527 1.50517 1.23365 0.99605 0.98152 1.06833 1.85645 1.13833 0.97445 1.95989 1.23246 0.92706 0.95314 1.58027 0.89743 1.26138 1.02107 0.97137 0.93812 1.70196 1.29718 1.07198 1.47759 0.84895 0.76918 0.78056 0.78004 1.17865 1.20026 1.20025 0.91856 0.90476 0.92504 0.82590 0.76985 0.75289 0.91888 0.91832 0.91172 0.93056 0.90439 0.92262 0.92330 0.74457 0.87011 0.87025 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.83 71.24 0.70 -0.92 16 2 C -0.10 -1.68 6.21 -19.56 -0.12 -1.80 16 3 C -0.23 -2.62 10.76 22.01 0.24 -2.38 16 4 C 0.05 0.29 11.89 83.48 0.99 1.28 16 5 N -0.53 -3.52 5.99 -183.62 -1.10 -4.63 16 6 H 0.43 -0.23 8.19 -92.71 -0.76 -0.99 16 7 C -0.09 -1.39 7.06 40.35 0.28 -1.11 16 8 C 0.58 11.32 7.79 86.44 0.67 12.00 16 9 O -0.57 -16.07 14.80 -4.32 -0.06 -16.14 16 10 N -0.71 -8.51 5.28 -467.07 -2.46 -10.98 16 11 C 0.13 1.88 5.06 86.38 0.44 2.32 16 12 C -0.09 -1.00 2.46 -10.79 -0.03 -1.03 16 13 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 14 C -0.15 -1.27 8.94 71.98 0.64 -0.62 16 15 C 0.13 2.48 5.06 86.38 0.44 2.92 16 16 N -0.71 -15.69 5.28 -463.05 -2.45 -18.14 16 17 C 0.53 18.80 7.85 87.66 0.69 19.49 16 18 O -0.57 -26.11 15.86 -3.05 -0.05 -26.16 16 19 C -0.13 -4.87 6.16 71.23 0.44 -4.43 16 20 S -0.16 -8.60 20.57 -56.49 -1.16 -9.76 16 21 C -0.55 -30.74 9.50 67.95 0.65 -30.09 16 22 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 23 C 0.01 0.72 5.49 84.86 0.47 1.18 16 24 N -0.91 -55.90 13.22 21.65 0.29 -55.62 16 25 Si 1.00 43.08 29.55 68.60 2.03 45.10 16 26 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.29 6.49 -2.39 -0.02 1.27 16 32 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 33 H 0.21 -0.64 8.06 -2.91 -0.02 -0.66 16 34 H 0.41 1.83 6.79 -92.71 -0.63 1.20 16 35 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.07 0.54 7.18 -2.39 -0.02 0.53 16 38 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.08 0.31 7.19 -2.39 -0.02 0.29 16 40 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.42 5.96 7.65 -92.71 -0.71 5.25 16 43 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 44 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 45 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -88.30 393.08 0.46 -87.84 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -1.06 Total: 11.68 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 6.50 Total: -3.21 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -5.73 Total: -89.35 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -0.11 Total: -42.30 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -88.30 0.46 -87.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704759900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.816 kcal (2) G-P(sol) polarization free energy of solvation -88.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds