Wall clock time and date at job start Tue Mar 31 2020 22:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48498 * 109.47157 * 240.00399 * 3 2 1 5 5 H 1.48496 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46802 * 120.00663 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 H 1.09001 * 109.47884 * 324.99780 * 14 13 11 16 16 C 1.53008 * 109.47335 * 84.99977 * 14 13 11 17 17 C 1.52998 * 109.47363 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47164 * 300.00049 * 17 16 14 19 19 C 1.53005 * 109.47340 * 59.99924 * 18 17 16 20 20 H 1.09002 * 109.46899 * 59.99933 * 19 18 17 21 21 N 1.46891 * 109.47129 * 180.02562 * 19 18 17 22 22 C 1.46906 * 110.99965 * 274.99971 * 21 19 18 23 23 C 1.50703 * 109.47132 * 180.02562 * 22 21 19 24 24 C 1.41380 * 126.80026 * 94.70730 * 23 22 21 25 25 C 1.35449 * 103.98388 * 179.88615 * 24 23 22 26 26 O 1.34041 * 106.44552 * 0.37444 * 25 24 23 27 27 N 1.20916 * 111.56736 * 359.74124 * 26 25 24 28 28 C 1.52998 * 109.46681 * 300.00106 * 19 18 17 29 29 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 30 30 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 31 31 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 32 32 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 33 33 H 1.08998 * 109.46811 * 299.99762 * 16 14 13 34 34 H 1.08994 * 109.47201 * 59.99659 * 16 14 13 35 35 H 1.09008 * 109.46993 * 59.99674 * 17 16 14 36 36 H 1.08994 * 109.47128 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47086 * 179.97438 * 18 17 16 38 38 H 1.08994 * 109.47018 * 299.99769 * 18 17 16 39 39 H 1.00898 * 111.00278 * 151.04568 * 21 19 18 40 40 H 1.08996 * 109.46883 * 299.99885 * 22 21 19 41 41 H 1.08997 * 109.47061 * 59.99790 * 22 21 19 42 42 H 1.08002 * 128.00740 * 0.02562 * 24 23 22 43 43 H 1.08006 * 126.77869 * 180.09615 * 25 24 23 44 44 H 1.09002 * 109.47313 * 299.99574 * 28 19 18 45 45 H 1.09006 * 109.47016 * 180.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 2.3305 -7.7150 0.0094 15 1 1.4148 -7.7575 0.5992 16 6 2.0335 -8.1553 -1.4256 17 6 1.4975 -9.5883 -1.4189 18 6 2.5436 -10.5211 -0.8054 19 6 2.8405 -10.0810 0.6296 20 1 1.9250 -10.1237 1.2196 21 7 3.8453 -10.9763 1.2184 22 6 3.2142 -12.1763 1.7840 23 6 4.2736 -13.0684 2.3780 24 6 4.6910 -13.1043 3.7283 25 6 5.6495 -14.0612 3.7493 26 8 5.7592 -14.5160 2.4932 27 7 4.9896 -13.9547 1.7484 28 6 3.3765 -8.6480 0.6228 29 1 -0.4851 0.8400 0.0004 30 1 3.1252 -3.7317 0.8875 31 1 3.1238 -3.7309 -0.8925 32 1 3.8010 -6.1834 0.0019 33 1 1.2886 -7.4904 -1.8628 34 1 2.9491 -8.1129 -2.0154 35 1 0.5820 -9.6310 -0.8288 36 1 1.2856 -9.9017 -2.4410 37 1 2.1615 -11.5420 -0.8002 38 1 3.4590 -10.4784 -1.3953 39 1 4.3952 -10.4950 1.9140 40 1 2.5086 -11.8835 2.5614 41 1 2.6853 -12.7139 0.9970 42 1 4.3280 -12.5085 4.5527 43 1 6.2168 -14.3895 4.6077 44 1 4.2921 -8.6053 0.0329 45 1 3.5885 -8.3345 1.6451 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713368325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:20 Heat of formation + Delta-G solvation = 11.539159 kcal Electronic energy + Delta-G solvation = -25837.065364 eV Core-core repulsion = 21983.408825 eV Total energy + Delta-G solvation = -3853.656539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.34621 -39.96737 -38.47201 -36.26643 -34.29805 -33.31748 -32.43153 -32.07485 -30.56741 -29.74722 -28.03983 -26.12034 -25.47992 -23.52677 -22.80296 -22.06532 -21.38238 -20.34570 -19.92984 -18.22599 -17.95150 -17.81810 -16.62923 -16.37077 -16.01851 -15.31787 -15.06780 -14.92479 -14.86689 -14.80274 -14.41146 -14.12867 -13.95711 -13.79383 -13.31182 -13.15699 -12.79986 -12.64990 -12.47253 -12.38414 -11.91347 -11.75937 -11.51297 -11.39746 -11.04892 -11.04401 -10.89845 -10.77112 -10.75739 -10.68926 -10.50271 -10.07736 -9.82552 -9.37021 -9.06675 -8.93453 -8.86341 -8.24437 -6.50382 -6.21910 -3.92551 1.08875 1.74679 2.84314 3.01142 3.09318 3.23090 3.26901 3.30005 3.56288 3.72139 3.81251 4.14263 4.20290 4.49870 4.54785 4.67633 4.71605 4.79601 4.87867 4.92947 5.05297 5.12929 5.13179 5.16615 5.20379 5.24067 5.25758 5.31415 5.38084 5.54537 5.61540 5.68426 5.78706 5.86525 5.88209 5.96766 5.99665 6.13643 6.18584 6.23266 6.53861 6.67787 6.87694 7.58854 7.72444 7.86753 8.34608 8.62226 9.23247 10.85431 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024124 B = 0.001690 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.382371 B =16567.115571 C =17280.956532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.517 6.517 13 N -0.735 5.735 14 C 0.152 3.848 15 H 0.087 0.913 16 C -0.132 4.132 17 C -0.116 4.116 18 C -0.107 4.107 19 C 0.094 3.906 20 H 0.051 0.949 21 N -0.679 5.679 22 C 0.137 3.863 23 C 0.017 3.983 24 C -0.233 4.233 25 C -0.060 4.060 26 O 0.101 5.899 27 N -0.346 5.346 28 C -0.127 4.127 29 H 0.269 0.731 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.397 0.603 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.344 0.656 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.171 0.829 43 H 0.216 0.784 44 H 0.078 0.922 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.240 -28.185 6.193 30.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.391 6.391 13 N -0.389 5.389 14 C 0.046 3.954 15 H 0.105 0.895 16 C -0.170 4.170 17 C -0.155 4.155 18 C -0.145 4.145 19 C -0.016 4.016 20 H 0.069 0.931 21 N -0.312 5.312 22 C 0.007 3.993 23 C -0.143 4.143 24 C -0.255 4.255 25 C -0.141 4.141 26 O 0.032 5.968 27 N -0.048 5.048 28 C -0.165 4.165 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.231 0.769 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.163 0.837 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.188 0.812 43 H 0.233 0.767 44 H 0.096 0.904 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.260 -29.113 4.324 30.855 hybrid contribution 1.953 2.150 1.735 3.384 sum 11.213 -26.963 6.059 29.824 Atomic orbital electron populations 1.70009 1.05944 1.27561 1.46779 1.24989 0.95028 0.99010 0.94529 0.86225 0.79239 0.81251 0.78796 1.19936 1.20801 1.19958 1.22832 0.94879 0.91698 1.59065 0.90992 1.85381 1.04939 0.96288 1.96721 1.23541 1.06563 0.95482 1.04887 1.20306 0.86569 0.86274 0.74934 1.90697 1.15349 1.85576 1.47516 1.46069 1.09855 1.05248 1.77716 1.20779 0.97297 0.80685 0.96604 0.89529 1.21960 1.01838 0.96474 0.96751 1.21491 0.98399 0.94414 1.01209 1.21563 0.99539 0.98693 0.94724 1.21467 0.93170 0.90658 0.96269 0.93102 1.60448 1.24914 1.07715 1.38079 1.20220 0.91216 0.89762 0.98088 1.23512 1.00611 0.98716 0.91456 1.22798 1.01351 1.03301 0.98000 1.26044 1.00932 0.97751 0.89410 1.84878 1.46102 1.49765 1.16008 1.73888 1.03765 1.09774 1.17402 1.21954 0.99362 0.93522 1.01672 0.92132 0.89293 0.89245 0.76909 0.90915 0.91740 0.91766 0.91397 0.92093 0.91059 0.83730 0.92607 0.89057 0.81181 0.76716 0.90367 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 11 C 0.53 9.77 7.81 -10.98 -0.09 9.68 16 12 O -0.52 -11.55 15.52 5.55 0.09 -11.46 16 13 N -0.74 -9.54 5.08 -53.80 -0.27 -9.82 16 14 C 0.15 1.72 2.46 -67.93 -0.17 1.55 16 15 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 16 C -0.13 -1.46 5.49 -26.73 -0.15 -1.60 16 17 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 18 C -0.11 -0.89 5.43 -26.73 -0.15 -1.03 16 19 C 0.09 0.73 2.49 -67.72 -0.17 0.56 16 20 H 0.05 0.41 7.80 -51.93 -0.41 0.00 16 21 N -0.68 -5.14 6.30 -107.99 -0.68 -5.82 16 22 C 0.14 0.98 6.07 -4.97 -0.03 0.95 16 23 C 0.02 0.13 6.84 -82.10 -0.56 -0.43 16 24 C -0.23 -1.29 11.12 -39.38 -0.44 -1.73 16 25 C -0.06 -0.28 12.30 29.74 0.37 0.09 16 26 O 0.10 0.80 11.20 17.18 0.19 1.00 16 27 N -0.35 -3.44 12.07 33.42 0.40 -3.03 16 28 C -0.13 -1.05 4.66 -26.73 -0.12 -1.17 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 31 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 32 H 0.40 4.04 8.60 -40.82 -0.35 3.69 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.49 7.45 -51.93 -0.39 0.10 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.34 2.35 8.34 -39.29 -0.33 2.02 16 40 H 0.06 0.33 8.06 -51.93 -0.42 -0.09 16 41 H 0.09 0.70 7.43 -51.93 -0.39 0.32 16 42 H 0.17 0.56 8.06 -52.49 -0.42 0.13 16 43 H 0.22 0.05 8.06 -52.48 -0.42 -0.38 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 LS Contribution 387.32 15.07 5.84 5.84 Total: -1.00 -35.56 387.32 -9.04 -44.60 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.86 Total: 1.75 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -1.24 Total: -10.17 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.18 Total: -44.07 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.28 Total: -10.46 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.56 -9.04 -44.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713368325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.143 kcal (2) G-P(sol) polarization free energy of solvation -35.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds