Wall clock time and date at job start Tue Mar 31 2020 22:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48498 * 109.47157 * 240.00399 * 3 2 1 5 5 H 1.48496 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46802 * 120.00663 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 H 1.09001 * 109.47884 * 324.99780 * 14 13 11 16 16 C 1.53008 * 109.47335 * 84.99977 * 14 13 11 17 17 C 1.52998 * 109.47363 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47164 * 300.00049 * 17 16 14 19 19 C 1.53005 * 109.47340 * 59.99924 * 18 17 16 20 20 H 1.09002 * 109.46899 * 59.99933 * 19 18 17 21 21 N 1.46891 * 109.47129 * 180.02562 * 19 18 17 22 22 C 1.46906 * 110.99965 * 274.99971 * 21 19 18 23 23 C 1.50703 * 109.47132 * 180.02562 * 22 21 19 24 24 C 1.41380 * 126.80026 * 94.70730 * 23 22 21 25 25 C 1.35449 * 103.98388 * 179.88615 * 24 23 22 26 26 O 1.34041 * 106.44552 * 0.37444 * 25 24 23 27 27 N 1.20916 * 111.56736 * 359.74124 * 26 25 24 28 28 C 1.52998 * 109.46681 * 300.00106 * 19 18 17 29 29 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 30 30 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 31 31 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 32 32 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 33 33 H 1.08998 * 109.46811 * 299.99762 * 16 14 13 34 34 H 1.08994 * 109.47201 * 59.99659 * 16 14 13 35 35 H 1.09008 * 109.46993 * 59.99674 * 17 16 14 36 36 H 1.08994 * 109.47128 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47086 * 179.97438 * 18 17 16 38 38 H 1.08994 * 109.47018 * 299.99769 * 18 17 16 39 39 H 1.00898 * 111.00278 * 151.04568 * 21 19 18 40 40 H 1.08996 * 109.46883 * 299.99885 * 22 21 19 41 41 H 1.08997 * 109.47061 * 59.99790 * 22 21 19 42 42 H 1.08002 * 128.00740 * 0.02562 * 24 23 22 43 43 H 1.08006 * 126.77869 * 180.09615 * 25 24 23 44 44 H 1.09002 * 109.47313 * 299.99574 * 28 19 18 45 45 H 1.09006 * 109.47016 * 180.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 2.3305 -7.7150 0.0094 15 1 1.4148 -7.7575 0.5992 16 6 2.0335 -8.1553 -1.4256 17 6 1.4975 -9.5883 -1.4189 18 6 2.5436 -10.5211 -0.8054 19 6 2.8405 -10.0810 0.6296 20 1 1.9250 -10.1237 1.2196 21 7 3.8453 -10.9763 1.2184 22 6 3.2142 -12.1763 1.7840 23 6 4.2736 -13.0684 2.3780 24 6 4.6910 -13.1043 3.7283 25 6 5.6495 -14.0612 3.7493 26 8 5.7592 -14.5160 2.4932 27 7 4.9896 -13.9547 1.7484 28 6 3.3765 -8.6480 0.6228 29 1 -0.4851 0.8400 0.0004 30 1 3.1252 -3.7317 0.8875 31 1 3.1238 -3.7309 -0.8925 32 1 3.8010 -6.1834 0.0019 33 1 1.2886 -7.4904 -1.8628 34 1 2.9491 -8.1129 -2.0154 35 1 0.5820 -9.6310 -0.8288 36 1 1.2856 -9.9017 -2.4410 37 1 2.1615 -11.5420 -0.8002 38 1 3.4590 -10.4784 -1.3953 39 1 4.3952 -10.4950 1.9140 40 1 2.5086 -11.8835 2.5614 41 1 2.6853 -12.7139 0.9970 42 1 4.3280 -12.5085 4.5527 43 1 6.2168 -14.3895 4.6077 44 1 4.2921 -8.6053 0.0329 45 1 3.5885 -8.3345 1.6451 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713368325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:19 Heat of formation + Delta-G solvation = -14.364636 kcal Electronic energy + Delta-G solvation = -25838.188637 eV Core-core repulsion = 21983.408825 eV Total energy + Delta-G solvation = -3854.779812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.85692 -41.08247 -39.53821 -37.02397 -35.21925 -34.58303 -34.11193 -32.54976 -31.72678 -30.61554 -29.22928 -27.64233 -26.73409 -23.99999 -23.61624 -22.97166 -21.91092 -21.51265 -20.84943 -19.79685 -18.68199 -18.49517 -17.81259 -17.57729 -16.87813 -16.79435 -16.41627 -16.10120 -15.90444 -15.64065 -15.46410 -15.11360 -14.85224 -14.67969 -14.47579 -14.29621 -13.91472 -13.75492 -13.42173 -13.18864 -13.16594 -12.98840 -12.86592 -12.62699 -12.39801 -12.23876 -12.12126 -11.77982 -11.62301 -11.56381 -11.49426 -11.13238 -11.12758 -10.84000 -10.53001 -10.27886 -10.07881 -9.49985 -8.66650 -8.34481 -6.12666 0.66763 1.25922 1.28856 1.43831 1.46890 1.56651 1.62258 2.24326 2.28878 2.50831 2.99501 3.04429 3.28799 3.31902 3.66857 3.77343 3.80095 3.87449 4.06143 4.14319 4.24334 4.27739 4.32379 4.37487 4.41095 4.46471 4.47613 4.51131 4.51421 4.60985 4.73132 4.85958 4.89690 5.06172 5.08189 5.13057 5.17811 5.24290 5.28181 5.41232 5.41736 5.55205 5.93083 6.19545 6.34190 6.53144 7.06633 7.26662 7.40624 8.74423 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024124 B = 0.001690 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.382371 B =16567.115571 C =17280.956532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.130 4.130 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.710 5.710 14 C 0.152 3.848 15 H 0.065 0.935 16 C -0.128 4.128 17 C -0.111 4.111 18 C -0.101 4.101 19 C 0.099 3.901 20 H 0.051 0.949 21 N -0.682 5.682 22 C 0.138 3.862 23 C 0.004 3.996 24 C -0.241 4.241 25 C -0.047 4.047 26 O 0.085 5.915 27 N -0.388 5.388 28 C -0.114 4.114 29 H 0.271 0.729 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.416 0.584 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.350 0.650 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.193 0.807 43 H 0.259 0.741 44 H 0.089 0.911 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.090 -28.770 7.342 32.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.282 4.282 11 C 0.321 3.679 12 O -0.443 6.443 13 N -0.363 5.363 14 C 0.047 3.953 15 H 0.083 0.917 16 C -0.167 4.167 17 C -0.150 4.150 18 C -0.139 4.139 19 C -0.010 4.010 20 H 0.069 0.931 21 N -0.315 5.315 22 C 0.009 3.991 23 C -0.155 4.155 24 C -0.263 4.263 25 C -0.127 4.127 26 O 0.019 5.981 27 N -0.093 5.093 28 C -0.152 4.152 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.253 0.747 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.169 0.831 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.210 0.790 43 H 0.274 0.726 44 H 0.107 0.893 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.174 -29.746 5.480 32.605 hybrid contribution 1.112 2.179 1.411 2.824 sum 13.286 -27.567 6.892 31.368 Atomic orbital electron populations 1.70179 1.07966 1.28664 1.47934 1.26128 0.95965 1.03311 0.93726 0.85008 0.77810 0.75712 0.79497 1.18702 1.20399 1.18617 1.23181 0.95358 0.92049 1.58981 0.89913 1.85566 1.10580 0.99201 1.97054 1.23386 1.03543 0.94483 1.06745 1.20048 0.86285 0.86642 0.74917 1.90689 1.17400 1.86055 1.50120 1.45825 1.10218 1.04859 1.75365 1.20893 0.97609 0.80035 0.96803 0.91718 1.21905 1.01406 0.96981 0.96369 1.21441 0.98459 0.93338 1.01721 1.21492 0.98929 0.98535 0.94929 1.21366 0.93312 0.90354 0.96007 0.93139 1.60395 1.24815 1.07688 1.38588 1.20213 0.91290 0.89402 0.98213 1.23805 1.00535 0.98490 0.92685 1.23128 1.01644 1.04028 0.97513 1.26877 1.00292 0.96495 0.89069 1.84822 1.45974 1.50028 1.17294 1.73886 1.05235 1.11268 1.18936 1.21842 0.98403 0.92805 1.02172 0.92001 0.87180 0.87355 0.74743 0.94199 0.90608 0.92265 0.90773 0.91736 0.91291 0.83051 0.91138 0.90056 0.78970 0.72556 0.89254 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.01 13.22 21.65 0.29 -55.73 16 2 C 0.01 0.77 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 7 C -0.55 -31.27 9.50 67.95 0.65 -30.62 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 10 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 11 C 0.54 19.48 7.81 87.66 0.68 20.17 16 12 O -0.56 -25.98 15.52 -3.04 -0.05 -26.03 16 13 N -0.71 -17.33 5.08 -442.52 -2.25 -19.58 16 14 C 0.15 3.28 2.46 44.99 0.11 3.39 16 15 H 0.06 1.74 7.58 -2.39 -0.02 1.73 16 16 C -0.13 -2.78 5.49 30.60 0.17 -2.61 16 17 C -0.11 -1.96 5.92 30.59 0.18 -1.78 16 18 C -0.10 -1.53 5.43 30.60 0.17 -1.36 16 19 C 0.10 1.38 2.49 44.92 0.11 1.49 16 20 H 0.05 0.73 7.80 -2.39 -0.02 0.71 16 21 N -0.68 -9.06 6.30 -495.58 -3.12 -12.18 16 22 C 0.14 1.81 6.07 85.56 0.52 2.33 16 23 C 0.00 0.06 6.84 43.58 0.30 0.35 16 24 C -0.24 -2.14 11.12 22.40 0.25 -1.89 16 25 C -0.05 -0.32 12.30 67.17 0.83 0.51 16 26 O 0.08 1.27 11.20 71.63 0.80 2.07 16 27 N -0.39 -7.53 12.07 -49.57 -0.60 -8.13 16 28 C -0.11 -1.62 4.66 30.59 0.14 -1.47 16 29 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 30 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 31 H 0.11 3.84 8.14 -2.40 -0.02 3.83 16 32 H 0.42 7.25 8.60 -92.71 -0.80 6.46 16 33 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 0.96 7.45 -2.39 -0.02 0.94 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.35 3.95 8.34 -89.70 -0.75 3.20 16 40 H 0.07 0.70 8.06 -2.39 -0.02 0.68 16 41 H 0.08 1.21 7.43 -2.39 -0.02 1.19 16 42 H 0.19 0.68 8.06 -2.91 -0.02 0.66 16 43 H 0.26 -0.87 8.06 -2.91 -0.02 -0.89 16 44 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.08 1.01 8.12 -2.38 -0.02 0.99 16 Total: -1.00 -80.88 387.32 0.42 -80.47 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -0.53 Total: 18.10 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 5.01 Total: -14.93 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -5.68 Total: -95.62 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: 0.75 Total: -23.96 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -80.88 0.42 -80.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713368325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.101 kcal (2) G-P(sol) polarization free energy of solvation -80.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds