Wall clock time and date at job start Tue Mar 31 2020 22:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86796 * 120.00360 * 2 1 4 4 H 1.48498 * 109.47308 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46960 * 300.00190 * 3 2 1 6 6 H 1.48497 * 109.47362 * 59.99899 * 3 2 1 7 7 C 1.38796 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99951 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00415 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00310 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47298 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99859 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00312 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00539 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.46684 * 34.99724 * 14 13 11 16 16 C 1.52997 * 109.47079 * 274.99997 * 14 13 11 17 17 C 1.53006 * 109.47164 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.46626 * 59.99702 * 17 16 14 19 19 C 1.52997 * 109.47592 * 300.00035 * 18 17 16 20 20 H 1.09000 * 109.47140 * 300.00346 * 19 18 17 21 21 N 1.46905 * 109.47305 * 180.02562 * 19 18 17 22 22 C 1.46901 * 110.99811 * 84.99969 * 21 19 18 23 23 C 1.50703 * 109.46628 * 180.02562 * 22 21 19 24 24 C 1.41383 * 126.79820 * 94.71312 * 23 22 21 25 25 C 1.35453 * 103.98339 * 179.88591 * 24 23 22 26 26 O 1.34048 * 106.44613 * 0.36705 * 25 24 23 27 27 N 1.20922 * 111.56659 * 359.75244 * 26 25 24 28 28 C 1.52996 * 109.47165 * 60.00300 * 19 18 17 29 29 H 0.97001 * 119.99733 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.46848 * 60.00249 * 10 9 7 31 31 H 1.09002 * 109.47539 * 300.00386 * 10 9 7 32 32 H 0.97008 * 119.99907 * 359.97438 * 13 11 10 33 33 H 1.09001 * 109.46922 * 59.99748 * 16 14 13 34 34 H 1.09000 * 109.47140 * 299.99448 * 16 14 13 35 35 H 1.08993 * 109.46955 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.47050 * 300.00004 * 17 16 14 37 37 H 1.09000 * 109.47160 * 60.00369 * 18 17 16 38 38 H 1.09002 * 109.46719 * 180.02562 * 18 17 16 39 39 H 1.00892 * 110.99786 * 208.95798 * 21 19 18 40 40 H 1.08998 * 109.47025 * 299.99379 * 22 21 19 41 41 H 1.08998 * 109.47165 * 60.00443 * 22 21 19 42 42 H 1.08001 * 128.00978 * 0.02562 * 24 23 22 43 43 H 1.08001 * 126.78142 * 180.09692 * 25 24 23 44 44 H 1.08992 * 109.47534 * 180.02562 * 28 19 18 45 45 H 1.08996 * 109.47134 * 59.99508 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0021 11 6 1.9871 -5.3028 -0.0030 12 8 0.7908 -5.5023 -0.0021 13 7 2.8438 -6.3432 -0.0037 14 6 2.3300 -7.7152 -0.0040 15 1 1.4140 -7.7599 -0.5930 16 6 2.0341 -8.1492 1.4330 17 6 1.4969 -9.5818 1.4327 18 6 2.5417 -10.5180 0.8220 19 6 2.8377 -10.0840 -0.6150 20 1 1.9216 -10.1284 -1.2039 21 7 3.8404 -10.9832 -1.2014 22 6 3.2068 -12.1844 -1.7616 23 6 4.2644 -13.0810 -2.3522 24 6 4.9050 -14.1685 -1.7151 25 6 5.7578 -14.6422 -2.6548 26 8 5.6038 -13.8628 -3.7345 27 7 4.7730 -13.0042 -3.5480 28 6 3.3748 -8.6514 -0.6146 29 1 -0.4850 0.8401 0.0004 30 1 3.1249 -3.7319 0.8875 31 1 3.1236 -3.7311 -0.8925 32 1 3.8006 -6.1837 -0.0040 33 1 1.2895 -7.4824 1.8678 34 1 2.9501 -8.1044 2.0220 35 1 1.2857 -9.8908 2.4563 36 1 0.5808 -9.6263 0.8437 37 1 3.4578 -10.4736 1.4110 38 1 2.1589 -11.5385 0.8214 39 1 4.3903 -10.5054 -1.8995 40 1 2.6782 -12.7181 -0.9718 41 1 2.5008 -11.8936 -2.5394 42 1 4.7488 -14.5376 -0.7122 43 1 6.4322 -15.4796 -2.5528 44 1 3.5853 -8.3420 -1.6383 45 1 4.2908 -8.6069 -0.0256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713368326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:24 Heat of formation + Delta-G solvation = 11.006332 kcal Electronic energy + Delta-G solvation = -25836.886052 eV Core-core repulsion = 21983.206408 eV Total energy + Delta-G solvation = -3853.679644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.34366 -39.96581 -38.46844 -36.25898 -34.29435 -33.32840 -32.42791 -32.06804 -30.57114 -29.74136 -28.04041 -26.12646 -25.47790 -23.57207 -22.76255 -22.07147 -21.33622 -20.33815 -19.93033 -18.26706 -17.95709 -17.81487 -16.56436 -16.35025 -15.77660 -15.67366 -15.13980 -15.01777 -14.87282 -14.80154 -14.30519 -14.06195 -13.92221 -13.71643 -13.19026 -13.11163 -12.89230 -12.67002 -12.47984 -12.43924 -11.90790 -11.82703 -11.51640 -11.40027 -11.07145 -11.01682 -10.89043 -10.77949 -10.75127 -10.68664 -10.50111 -10.08439 -9.80119 -9.36360 -9.07675 -8.94459 -8.85888 -8.22897 -6.49688 -6.21786 -3.92108 1.08222 1.76312 2.84678 3.01857 3.10122 3.21600 3.27903 3.32373 3.54627 3.71918 3.88537 4.09241 4.20502 4.49400 4.54564 4.69567 4.72729 4.84597 4.88465 4.91633 5.04175 5.12477 5.13560 5.15107 5.18970 5.22857 5.30165 5.31339 5.38619 5.57223 5.61684 5.67959 5.77838 5.83231 5.88861 5.95573 5.98653 6.14433 6.17826 6.22275 6.52746 6.68399 6.85342 7.60057 7.73215 7.83521 8.35572 8.63039 9.23787 10.85729 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024071 B = 0.001692 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.934777 B =16541.304175 C =17281.834811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.517 6.517 13 N -0.735 5.735 14 C 0.152 3.848 15 H 0.086 0.914 16 C -0.131 4.131 17 C -0.117 4.117 18 C -0.106 4.106 19 C 0.093 3.907 20 H 0.051 0.949 21 N -0.679 5.679 22 C 0.137 3.863 23 C 0.019 3.981 24 C -0.218 4.218 25 C -0.063 4.063 26 O 0.100 5.900 27 N -0.362 5.362 28 C -0.127 4.127 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.397 0.603 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.346 0.654 40 H 0.096 0.904 41 H 0.050 0.950 42 H 0.172 0.828 43 H 0.216 0.784 44 H 0.068 0.932 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.814 -30.980 -0.866 33.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.391 6.391 13 N -0.389 5.389 14 C 0.046 3.954 15 H 0.105 0.895 16 C -0.170 4.170 17 C -0.156 4.156 18 C -0.144 4.144 19 C -0.017 4.017 20 H 0.069 0.931 21 N -0.312 5.312 22 C 0.007 3.993 23 C -0.140 4.140 24 C -0.240 4.240 25 C -0.144 4.144 26 O 0.033 5.967 27 N -0.066 5.066 28 C -0.166 4.166 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.231 0.769 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.164 0.836 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.189 0.811 43 H 0.233 0.767 44 H 0.087 0.913 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.582 -30.679 -1.332 32.168 hybrid contribution 2.136 1.203 0.052 2.452 sum 11.717 -29.475 -1.281 31.745 Atomic orbital electron populations 1.70030 1.05950 1.27333 1.46979 1.24993 0.95029 0.99036 0.94547 0.86115 0.79587 0.81882 0.77901 1.19624 1.20569 1.20557 1.22915 0.94951 0.91664 1.58800 0.90883 1.85388 1.04974 0.96340 1.96708 1.23539 1.06550 0.95468 1.04897 1.20306 0.86568 0.86276 0.74928 1.90696 1.15351 1.85575 1.47520 1.46066 1.09860 1.05241 1.77716 1.20776 0.97328 0.80707 0.96577 0.89548 1.21958 1.01819 0.96491 0.96728 1.21494 0.98437 0.94437 1.01185 1.21558 0.99515 0.98663 0.94669 1.21478 0.93286 0.90702 0.96232 0.93107 1.60521 1.24792 1.07706 1.38184 1.20241 0.91287 0.90068 0.97670 1.23545 1.01178 0.98636 0.90635 1.22736 0.99999 0.98704 1.02525 1.26054 1.02503 0.99270 0.86599 1.84850 1.43792 1.31615 1.36489 1.73874 1.04186 1.09188 1.19305 1.21953 0.99338 0.93525 1.01737 0.92245 0.89235 0.89286 0.76907 0.90916 0.91734 0.91389 0.91754 0.91049 0.92090 0.83556 0.88546 0.93143 0.81054 0.76702 0.91324 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 11 C 0.53 9.88 7.81 -10.99 -0.09 9.80 16 12 O -0.52 -11.65 15.53 5.55 0.09 -11.56 16 13 N -0.74 -9.70 5.08 -53.81 -0.27 -9.97 16 14 C 0.15 1.74 2.45 -67.93 -0.17 1.58 16 15 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 16 C -0.13 -1.43 5.49 -26.73 -0.15 -1.58 16 17 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 18 C -0.11 -0.79 5.42 -26.73 -0.15 -0.94 16 19 C 0.09 0.72 2.49 -67.71 -0.17 0.56 16 20 H 0.05 0.43 7.80 -51.93 -0.40 0.02 16 21 N -0.68 -5.16 6.30 -107.99 -0.68 -5.84 16 22 C 0.14 0.98 6.07 -4.97 -0.03 0.95 16 23 C 0.02 0.16 6.84 -82.10 -0.56 -0.41 16 24 C -0.22 -1.25 11.12 -39.38 -0.44 -1.69 16 25 C -0.06 -0.29 12.30 29.74 0.37 0.07 16 26 O 0.10 0.80 11.20 17.15 0.19 0.99 16 27 N -0.36 -3.52 12.07 33.42 0.40 -3.11 16 28 C -0.13 -1.09 4.66 -26.73 -0.12 -1.21 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 30 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 31 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 32 H 0.40 4.12 8.60 -40.82 -0.35 3.77 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.41 7.45 -51.93 -0.39 0.02 16 39 H 0.35 2.79 8.34 -39.30 -0.33 2.46 16 40 H 0.10 0.57 7.43 -51.93 -0.39 0.18 16 41 H 0.05 0.39 8.05 -51.93 -0.42 -0.03 16 42 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.22 0.05 8.06 -52.49 -0.42 -0.37 16 44 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 387.33 15.07 5.84 5.84 Total: -1.00 -35.46 387.33 -9.04 -44.50 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.86 Total: 2.03 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -1.24 Total: -9.95 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.18 Total: -44.45 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.28 Total: -10.58 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.46 -9.04 -44.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713368326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.507 kcal (2) G-P(sol) polarization free energy of solvation -35.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds