Wall clock time and date at job start Tue Mar 31 2020 22:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86796 * 120.00360 * 2 1 4 4 H 1.48498 * 109.47308 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46960 * 300.00190 * 3 2 1 6 6 H 1.48497 * 109.47362 * 59.99899 * 3 2 1 7 7 C 1.38796 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99951 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00415 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00310 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47298 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99859 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00312 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00539 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.46684 * 34.99724 * 14 13 11 16 16 C 1.52997 * 109.47079 * 274.99997 * 14 13 11 17 17 C 1.53006 * 109.47164 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.46626 * 59.99702 * 17 16 14 19 19 C 1.52997 * 109.47592 * 300.00035 * 18 17 16 20 20 H 1.09000 * 109.47140 * 300.00346 * 19 18 17 21 21 N 1.46905 * 109.47305 * 180.02562 * 19 18 17 22 22 C 1.46901 * 110.99811 * 84.99969 * 21 19 18 23 23 C 1.50703 * 109.46628 * 180.02562 * 22 21 19 24 24 C 1.41383 * 126.79820 * 94.71312 * 23 22 21 25 25 C 1.35453 * 103.98339 * 179.88591 * 24 23 22 26 26 O 1.34048 * 106.44613 * 0.36705 * 25 24 23 27 27 N 1.20922 * 111.56659 * 359.75244 * 26 25 24 28 28 C 1.52996 * 109.47165 * 60.00300 * 19 18 17 29 29 H 0.97001 * 119.99733 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.46848 * 60.00249 * 10 9 7 31 31 H 1.09002 * 109.47539 * 300.00386 * 10 9 7 32 32 H 0.97008 * 119.99907 * 359.97438 * 13 11 10 33 33 H 1.09001 * 109.46922 * 59.99748 * 16 14 13 34 34 H 1.09000 * 109.47140 * 299.99448 * 16 14 13 35 35 H 1.08993 * 109.46955 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.47050 * 300.00004 * 17 16 14 37 37 H 1.09000 * 109.47160 * 60.00369 * 18 17 16 38 38 H 1.09002 * 109.46719 * 180.02562 * 18 17 16 39 39 H 1.00892 * 110.99786 * 208.95798 * 21 19 18 40 40 H 1.08998 * 109.47025 * 299.99379 * 22 21 19 41 41 H 1.08998 * 109.47165 * 60.00443 * 22 21 19 42 42 H 1.08001 * 128.00978 * 0.02562 * 24 23 22 43 43 H 1.08001 * 126.78142 * 180.09692 * 25 24 23 44 44 H 1.08992 * 109.47534 * 180.02562 * 28 19 18 45 45 H 1.08996 * 109.47134 * 59.99508 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0021 11 6 1.9871 -5.3028 -0.0030 12 8 0.7908 -5.5023 -0.0021 13 7 2.8438 -6.3432 -0.0037 14 6 2.3300 -7.7152 -0.0040 15 1 1.4140 -7.7599 -0.5930 16 6 2.0341 -8.1492 1.4330 17 6 1.4969 -9.5818 1.4327 18 6 2.5417 -10.5180 0.8220 19 6 2.8377 -10.0840 -0.6150 20 1 1.9216 -10.1284 -1.2039 21 7 3.8404 -10.9832 -1.2014 22 6 3.2068 -12.1844 -1.7616 23 6 4.2644 -13.0810 -2.3522 24 6 4.9050 -14.1685 -1.7151 25 6 5.7578 -14.6422 -2.6548 26 8 5.6038 -13.8628 -3.7345 27 7 4.7730 -13.0042 -3.5480 28 6 3.3748 -8.6514 -0.6146 29 1 -0.4850 0.8401 0.0004 30 1 3.1249 -3.7319 0.8875 31 1 3.1236 -3.7311 -0.8925 32 1 3.8006 -6.1837 -0.0040 33 1 1.2895 -7.4824 1.8678 34 1 2.9501 -8.1044 2.0220 35 1 1.2857 -9.8908 2.4563 36 1 0.5808 -9.6263 0.8437 37 1 3.4578 -10.4736 1.4110 38 1 2.1589 -11.5385 0.8214 39 1 4.3903 -10.5054 -1.8995 40 1 2.6782 -12.7181 -0.9718 41 1 2.5008 -11.8936 -2.5394 42 1 4.7488 -14.5376 -0.7122 43 1 6.4322 -15.4796 -2.5528 44 1 3.5853 -8.3420 -1.6383 45 1 4.2908 -8.6069 -0.0256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713368326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:23 Heat of formation + Delta-G solvation = -14.840360 kcal Electronic energy + Delta-G solvation = -25838.006849 eV Core-core repulsion = 21983.206408 eV Total energy + Delta-G solvation = -3854.800441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.85670 -41.09308 -39.54222 -37.02395 -35.22333 -34.59613 -34.11573 -32.54808 -31.73453 -30.61828 -29.22819 -27.65827 -26.73672 -24.06759 -23.54900 -22.98510 -21.86905 -21.51024 -20.83720 -19.81087 -18.73373 -18.50298 -17.82589 -17.57494 -16.89301 -16.60787 -16.40045 -16.21845 -15.99479 -15.74298 -15.61954 -15.11337 -14.72635 -14.68366 -14.39196 -14.30460 -13.76543 -13.62193 -13.51202 -13.20958 -13.16927 -13.09855 -12.92090 -12.60568 -12.42267 -12.26073 -12.13098 -11.75076 -11.60269 -11.54407 -11.48496 -11.16888 -11.13959 -10.84919 -10.52912 -10.28482 -10.09087 -9.54807 -8.67888 -8.35963 -6.14044 0.65000 1.25589 1.30055 1.40600 1.46290 1.57542 1.60596 2.23072 2.27393 2.50678 2.98324 3.00616 3.30585 3.32409 3.63626 3.75479 3.80536 3.85093 4.04925 4.15790 4.25337 4.27094 4.31268 4.38975 4.43922 4.44258 4.48952 4.49760 4.53405 4.62038 4.68624 4.88563 4.92302 5.07533 5.09511 5.14357 5.20341 5.25464 5.29951 5.41035 5.43649 5.54970 5.90767 6.18971 6.21732 6.51323 7.05506 7.24975 7.37066 8.73583 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024071 B = 0.001692 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.934777 B =16541.304175 C =17281.834811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.710 5.710 14 C 0.151 3.849 15 H 0.060 0.940 16 C -0.127 4.127 17 C -0.112 4.112 18 C -0.097 4.097 19 C 0.096 3.904 20 H 0.043 0.957 21 N -0.674 5.674 22 C 0.138 3.862 23 C 0.006 3.994 24 C -0.229 4.229 25 C -0.049 4.049 26 O 0.084 5.916 27 N -0.401 5.401 28 C -0.116 4.116 29 H 0.271 0.729 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.415 0.585 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.343 0.657 40 H 0.112 0.888 41 H 0.040 0.960 42 H 0.194 0.806 43 H 0.259 0.741 44 H 0.069 0.931 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.855 -32.539 -0.207 35.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.321 3.679 12 O -0.443 6.443 13 N -0.363 5.363 14 C 0.046 3.954 15 H 0.078 0.922 16 C -0.166 4.166 17 C -0.151 4.151 18 C -0.135 4.135 19 C -0.013 4.013 20 H 0.061 0.939 21 N -0.306 5.306 22 C 0.009 3.991 23 C -0.153 4.153 24 C -0.250 4.250 25 C -0.129 4.129 26 O 0.018 5.982 27 N -0.108 5.108 28 C -0.154 4.154 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.252 0.748 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.161 0.839 40 H 0.130 0.870 41 H 0.058 0.942 42 H 0.211 0.789 43 H 0.275 0.725 44 H 0.088 0.912 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.682 -32.287 -0.675 34.695 hybrid contribution 1.237 1.517 -0.147 1.963 sum 13.919 -30.770 -0.823 33.782 Atomic orbital electron populations 1.70192 1.07983 1.28555 1.48059 1.26134 0.95974 1.03335 0.93720 0.84895 0.78596 0.76290 0.78100 1.18036 1.19940 1.19858 1.23245 0.95359 0.92015 1.58805 0.89921 1.85572 1.10590 0.99248 1.97044 1.23383 1.03549 0.94464 1.06739 1.20055 0.86288 0.86661 0.74921 1.90687 1.17406 1.86063 1.50140 1.45834 1.10221 1.04902 1.75366 1.20901 0.97388 0.80018 0.97105 0.92152 1.21906 1.01534 0.97245 0.95912 1.21462 0.98466 0.93224 1.01938 1.21485 0.99170 0.98880 0.93981 1.21417 0.93035 0.90277 0.96615 0.93924 1.60546 1.24405 1.07593 1.38065 1.20277 0.91074 0.89961 0.97797 1.23831 1.01353 0.99439 0.90667 1.23075 1.00044 0.98189 1.03721 1.26892 1.01997 0.98997 0.85044 1.84796 1.43625 1.31927 1.37809 1.73876 1.05616 1.10715 1.20559 1.21851 0.98672 0.93122 1.01741 0.91985 0.87216 0.87332 0.74756 0.94304 0.90269 0.90275 0.92629 0.90532 0.90714 0.83914 0.87024 0.94220 0.78894 0.72490 0.91182 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.39 13.22 21.65 0.29 -56.10 16 2 C 0.01 0.75 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.89 29.55 68.60 2.03 45.92 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.55 -31.47 9.50 67.95 0.65 -30.83 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.51 20.57 -56.49 -1.16 -9.68 16 10 C -0.13 -5.20 6.16 71.23 0.44 -4.77 16 11 C 0.53 19.91 7.81 87.66 0.68 20.60 16 12 O -0.56 -26.46 15.53 -3.04 -0.05 -26.51 16 13 N -0.71 -17.96 5.08 -442.55 -2.25 -20.21 16 14 C 0.15 3.38 2.45 44.99 0.11 3.49 16 15 H 0.06 1.71 7.58 -2.39 -0.02 1.69 16 16 C -0.13 -2.69 5.49 30.60 0.17 -2.52 16 17 C -0.11 -1.82 5.92 30.60 0.18 -1.64 16 18 C -0.10 -1.22 5.42 30.59 0.17 -1.06 16 19 C 0.10 1.35 2.49 44.91 0.11 1.47 16 20 H 0.04 0.69 7.80 -2.39 -0.02 0.67 16 21 N -0.67 -9.09 6.30 -495.57 -3.12 -12.21 16 22 C 0.14 1.83 6.07 85.56 0.52 2.35 16 23 C 0.01 0.08 6.84 43.58 0.30 0.38 16 24 C -0.23 -2.10 11.12 22.40 0.25 -1.85 16 25 C -0.05 -0.33 12.30 67.18 0.83 0.49 16 26 O 0.08 1.25 11.20 71.56 0.80 2.05 16 27 N -0.40 -7.66 12.07 -49.55 -0.60 -8.26 16 28 C -0.12 -1.77 4.66 30.59 0.14 -1.63 16 29 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 30 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 31 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 32 H 0.42 7.60 8.60 -92.70 -0.80 6.80 16 33 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.78 7.45 -2.39 -0.02 0.77 16 39 H 0.34 5.08 8.34 -89.70 -0.75 4.33 16 40 H 0.11 1.09 7.43 -2.39 -0.02 1.07 16 41 H 0.04 0.60 8.05 -2.39 -0.02 0.58 16 42 H 0.19 0.77 8.06 -2.91 -0.02 0.74 16 43 H 0.26 -0.89 8.06 -2.91 -0.02 -0.91 16 44 H 0.07 1.09 8.12 -2.39 -0.02 1.07 16 45 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -80.94 387.33 0.42 -80.53 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -0.53 Total: 18.76 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 5.01 Total: -14.30 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -5.68 Total: -96.78 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: 0.75 Total: -24.45 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.68 kcal Total: -80.94 0.42 -80.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713368326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.685 kcal (2) G-P(sol) polarization free energy of solvation -80.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds