Wall clock time and date at job start Tue Mar 31 2020 22:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48494 * 109.47644 * 270.00621 * 3 2 1 5 5 H 1.48506 * 109.47143 * 30.00567 * 3 2 1 6 6 H 1.48501 * 109.47120 * 150.00282 * 3 2 1 7 7 C 1.38798 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99590 * 359.71971 * 7 2 1 9 9 S 1.76199 * 120.00102 * 179.97438 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99894 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.47425 * 324.99928 * 14 13 11 16 16 C 1.52998 * 109.47013 * 85.00322 * 14 13 11 17 17 C 1.53005 * 109.47232 * 59.99775 * 16 14 13 18 18 C 1.53002 * 109.46939 * 60.00097 * 17 16 14 19 19 C 1.52998 * 109.47079 * 299.99996 * 18 17 16 20 20 H 1.09001 * 109.47591 * 300.00042 * 19 18 17 21 21 N 1.46906 * 109.47168 * 180.02562 * 19 18 17 22 22 C 1.46898 * 111.00024 * 84.99842 * 21 19 18 23 23 C 1.50701 * 109.47091 * 179.97438 * 22 21 19 24 24 C 1.41378 * 126.79791 * 94.71422 * 23 22 21 25 25 C 1.35453 * 103.98175 * 179.89008 * 24 23 22 26 26 O 1.34044 * 106.44734 * 0.36667 * 25 24 23 27 27 N 1.20920 * 111.56416 * 359.75099 * 26 25 24 28 28 C 1.53002 * 109.47163 * 205.00228 * 14 13 11 29 29 H 0.96995 * 120.00138 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 31 31 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 32 32 H 0.97002 * 119.99659 * 0.02562 * 13 11 10 33 33 H 1.09003 * 109.47017 * 179.97438 * 16 14 13 34 34 H 1.08995 * 109.47317 * 299.99941 * 16 14 13 35 35 H 1.09001 * 109.47253 * 300.00080 * 17 16 14 36 36 H 1.08994 * 109.47320 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47079 * 179.97438 * 18 17 16 38 38 H 1.09001 * 109.47162 * 59.99928 * 18 17 16 39 39 H 1.00900 * 110.99502 * 208.95198 * 21 19 18 40 40 H 1.08994 * 109.47173 * 300.00610 * 22 21 19 41 41 H 1.09005 * 109.46631 * 60.00130 * 22 21 19 42 42 H 1.07997 * 128.01056 * 0.02562 * 24 23 22 43 43 H 1.08004 * 126.77298 * 180.10114 * 25 24 23 44 44 H 1.09004 * 109.47190 * 59.99986 * 28 14 13 45 45 H 1.08991 * 109.47245 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4478 2.6527 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1372 0.0036 9 16 3.7724 -1.2019 -0.0012 10 6 4.0867 -2.9844 0.0069 11 6 5.5732 -3.2323 0.0068 12 8 6.3441 -2.2961 0.0022 13 7 6.0459 -4.4944 0.0128 14 6 7.4909 -4.7354 0.0122 15 1 7.9870 -3.9680 -0.5819 16 6 8.0165 -4.6878 1.4483 17 6 7.3201 -5.7651 2.2822 18 6 7.6073 -7.1417 1.6794 19 6 7.0817 -7.1893 0.2434 20 1 6.0066 -7.0100 0.2437 21 7 7.3570 -8.5113 -0.3353 22 6 6.3009 -9.4700 0.0162 23 6 6.6167 -10.8112 -0.5941 24 6 7.2873 -11.8885 0.0293 25 6 7.3179 -12.8505 -0.9238 26 8 6.7124 -12.3350 -2.0029 27 7 6.3310 -11.2054 -1.8013 28 6 7.7781 -6.1120 -0.5906 29 1 -0.4850 0.8400 0.0004 30 1 3.6441 -3.4274 0.8990 31 1 3.6435 -3.4356 -0.8809 32 1 5.4292 -5.2432 0.0168 33 1 9.0916 -4.8676 1.4478 34 1 7.8119 -3.7071 1.8777 35 1 6.2449 -5.5858 2.2827 36 1 7.6948 -5.7315 3.3052 37 1 7.1116 -7.9092 2.2738 38 1 8.6825 -7.3210 1.6790 39 1 7.4724 -8.4511 -1.3358 40 1 6.2450 -9.5677 1.1003 41 1 5.3445 -9.1133 -0.3663 42 1 7.6818 -11.9346 1.0336 43 1 7.7492 -13.8365 -0.8336 44 1 7.4037 -6.1460 -1.6138 45 1 8.8532 -6.2915 -0.5907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713368327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:27 Heat of formation + Delta-G solvation = 14.737117 kcal Electronic energy + Delta-G solvation = -26385.226085 eV Core-core repulsion = 22531.708219 eV Total energy + Delta-G solvation = -3853.517865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.33091 -40.28947 -38.41670 -36.29926 -34.16161 -33.14121 -32.44324 -32.05661 -30.76702 -29.79240 -28.36474 -26.13215 -25.61627 -23.56634 -22.85373 -22.04271 -21.37879 -21.06374 -19.19122 -18.24967 -17.98858 -17.87569 -16.65917 -16.23800 -15.93886 -15.72085 -15.36717 -15.10375 -15.02761 -14.89284 -14.27974 -13.98208 -13.89527 -13.55201 -13.35341 -13.10059 -12.80391 -12.74790 -12.46773 -12.40439 -12.25821 -12.01623 -11.82033 -11.52622 -11.27017 -11.01597 -10.92535 -10.72536 -10.65217 -10.60070 -10.31608 -10.06418 -9.86253 -9.51051 -9.02086 -8.95490 -8.93498 -8.50784 -6.92270 -6.29482 -4.01198 1.09704 1.77779 2.76498 2.86123 2.97488 3.30644 3.34169 3.49985 3.55038 3.65988 3.87107 4.10066 4.32585 4.36634 4.47222 4.67885 4.73256 4.75791 4.86375 4.87708 4.89682 4.99217 5.08791 5.09631 5.14165 5.20940 5.24996 5.32200 5.36541 5.45248 5.58558 5.61236 5.70961 5.74987 5.78882 5.91574 5.99487 6.01122 6.11969 6.13985 6.51402 6.59673 6.84524 7.60684 7.85032 7.93559 8.40969 8.49837 9.16665 10.79748 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.002074 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.255616 B =13496.212636 C =14538.673126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.731 5.731 14 C 0.152 3.848 15 H 0.091 0.909 16 C -0.132 4.132 17 C -0.119 4.119 18 C -0.105 4.105 19 C 0.087 3.913 20 H 0.047 0.953 21 N -0.679 5.679 22 C 0.136 3.864 23 C 0.019 3.981 24 C -0.218 4.218 25 C -0.063 4.063 26 O 0.100 5.900 27 N -0.361 5.361 28 C -0.127 4.127 29 H 0.271 0.729 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.395 0.605 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.346 0.654 40 H 0.096 0.904 41 H 0.051 0.949 42 H 0.172 0.828 43 H 0.216 0.784 44 H 0.069 0.931 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.229 -26.312 2.127 32.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.276 4.276 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.386 5.386 14 C 0.046 3.954 15 H 0.109 0.891 16 C -0.170 4.170 17 C -0.157 4.157 18 C -0.143 4.143 19 C -0.022 4.022 20 H 0.065 0.935 21 N -0.312 5.312 22 C 0.007 3.993 23 C -0.140 4.140 24 C -0.240 4.240 25 C -0.145 4.145 26 O 0.033 5.967 27 N -0.065 5.065 28 C -0.166 4.166 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.230 0.770 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.164 0.836 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.189 0.811 43 H 0.233 0.767 44 H 0.088 0.912 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 19.130 -24.259 1.581 30.935 hybrid contribution -1.470 -0.763 0.265 1.677 sum 17.660 -25.021 1.846 30.681 Atomic orbital electron populations 1.69939 1.05912 1.27767 1.48076 1.24722 0.94463 0.98985 0.93193 0.86729 0.81890 0.83259 0.79936 1.19214 1.19940 1.15917 1.22317 0.88314 0.97514 1.58763 0.89436 1.84776 1.09221 1.00033 1.97417 1.23287 0.94221 1.04401 1.05664 1.20260 0.90486 0.82425 0.75066 1.90692 1.58719 1.42180 1.47730 1.46122 1.07250 1.07846 1.77390 1.20824 0.81544 0.96350 0.96680 0.89104 1.21937 0.99953 0.99902 0.95226 1.21511 1.01203 0.94005 0.98992 1.21543 1.01926 0.96815 0.94009 1.21571 0.98058 0.87112 0.95455 0.93509 1.60523 1.45069 1.08006 1.17573 1.20247 0.93312 0.85482 1.00291 1.23535 1.00589 0.98991 0.90896 1.22732 1.05397 0.92972 1.02865 1.26051 1.00196 1.01683 0.86519 1.84849 1.54696 1.21135 1.36039 1.73874 1.18326 0.95558 1.18732 1.21998 1.02388 0.93302 0.98871 0.91943 0.88591 0.88668 0.76974 0.91115 0.90937 0.91790 0.91680 0.92161 0.91080 0.83575 0.88545 0.93075 0.81074 0.76711 0.91240 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.64 13.97 55.49 0.78 -25.87 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.86 27.74 -169.99 -4.71 17.14 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 7 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 10 C -0.13 -2.40 6.16 36.00 0.22 -2.18 16 11 C 0.53 9.21 7.81 -10.99 -0.09 9.12 16 12 O -0.52 -10.93 15.52 5.56 0.09 -10.84 16 13 N -0.73 -8.94 4.23 -53.81 -0.23 -9.16 16 14 C 0.15 1.60 2.78 -67.93 -0.19 1.41 16 15 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 16 C -0.13 -1.32 5.60 -26.73 -0.15 -1.47 16 17 C -0.12 -1.03 5.77 -26.73 -0.15 -1.18 16 18 C -0.10 -0.76 5.43 -26.73 -0.15 -0.91 16 19 C 0.09 0.64 2.32 -67.71 -0.16 0.48 16 20 H 0.05 0.36 6.16 -51.93 -0.32 0.04 16 21 N -0.68 -4.99 6.30 -107.99 -0.68 -5.67 16 22 C 0.14 0.99 6.07 -4.98 -0.03 0.96 16 23 C 0.02 0.16 6.84 -82.10 -0.56 -0.40 16 24 C -0.22 -1.29 11.12 -39.38 -0.44 -1.73 16 25 C -0.06 -0.31 12.30 29.74 0.37 0.06 16 26 O 0.10 0.82 11.20 17.17 0.19 1.01 16 27 N -0.36 -3.58 12.07 33.42 0.40 -3.18 16 28 C -0.13 -1.00 4.88 -26.73 -0.13 -1.13 16 29 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 31 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 32 H 0.40 3.97 6.87 -40.82 -0.28 3.69 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.62 7.60 -51.93 -0.39 0.22 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.42 7.45 -51.93 -0.39 0.03 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.35 2.69 8.34 -39.29 -0.33 2.36 16 40 H 0.10 0.59 7.44 -51.93 -0.39 0.21 16 41 H 0.05 0.40 8.05 -51.93 -0.42 -0.02 16 42 H 0.17 0.65 8.06 -52.49 -0.42 0.22 16 43 H 0.22 0.09 8.06 -52.48 -0.42 -0.34 16 44 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -34.81 380.21 -8.38 -43.19 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.71 Total: 2.24 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -1.24 Total: -9.03 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.27 Total: -43.88 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.28 Total: -9.83 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.81 -8.38 -43.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713368327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.930 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds