Wall clock time and date at job start Tue Mar 31 2020 22:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48494 * 109.47644 * 270.00621 * 3 2 1 5 5 H 1.48506 * 109.47143 * 30.00567 * 3 2 1 6 6 H 1.48501 * 109.47120 * 150.00282 * 3 2 1 7 7 C 1.38798 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99590 * 359.71971 * 7 2 1 9 9 S 1.76199 * 120.00102 * 179.97438 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99894 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.47425 * 324.99928 * 14 13 11 16 16 C 1.52998 * 109.47013 * 85.00322 * 14 13 11 17 17 C 1.53005 * 109.47232 * 59.99775 * 16 14 13 18 18 C 1.53002 * 109.46939 * 60.00097 * 17 16 14 19 19 C 1.52998 * 109.47079 * 299.99996 * 18 17 16 20 20 H 1.09001 * 109.47591 * 300.00042 * 19 18 17 21 21 N 1.46906 * 109.47168 * 180.02562 * 19 18 17 22 22 C 1.46898 * 111.00024 * 84.99842 * 21 19 18 23 23 C 1.50701 * 109.47091 * 179.97438 * 22 21 19 24 24 C 1.41378 * 126.79791 * 94.71422 * 23 22 21 25 25 C 1.35453 * 103.98175 * 179.89008 * 24 23 22 26 26 O 1.34044 * 106.44734 * 0.36667 * 25 24 23 27 27 N 1.20920 * 111.56416 * 359.75099 * 26 25 24 28 28 C 1.53002 * 109.47163 * 205.00228 * 14 13 11 29 29 H 0.96995 * 120.00138 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 31 31 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 32 32 H 0.97002 * 119.99659 * 0.02562 * 13 11 10 33 33 H 1.09003 * 109.47017 * 179.97438 * 16 14 13 34 34 H 1.08995 * 109.47317 * 299.99941 * 16 14 13 35 35 H 1.09001 * 109.47253 * 300.00080 * 17 16 14 36 36 H 1.08994 * 109.47320 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47079 * 179.97438 * 18 17 16 38 38 H 1.09001 * 109.47162 * 59.99928 * 18 17 16 39 39 H 1.00900 * 110.99502 * 208.95198 * 21 19 18 40 40 H 1.08994 * 109.47173 * 300.00610 * 22 21 19 41 41 H 1.09005 * 109.46631 * 60.00130 * 22 21 19 42 42 H 1.07997 * 128.01056 * 0.02562 * 24 23 22 43 43 H 1.08004 * 126.77298 * 180.10114 * 25 24 23 44 44 H 1.09004 * 109.47190 * 59.99986 * 28 14 13 45 45 H 1.08991 * 109.47245 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4478 2.6527 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1372 0.0036 9 16 3.7724 -1.2019 -0.0012 10 6 4.0867 -2.9844 0.0069 11 6 5.5732 -3.2323 0.0068 12 8 6.3441 -2.2961 0.0022 13 7 6.0459 -4.4944 0.0128 14 6 7.4909 -4.7354 0.0122 15 1 7.9870 -3.9680 -0.5819 16 6 8.0165 -4.6878 1.4483 17 6 7.3201 -5.7651 2.2822 18 6 7.6073 -7.1417 1.6794 19 6 7.0817 -7.1893 0.2434 20 1 6.0066 -7.0100 0.2437 21 7 7.3570 -8.5113 -0.3353 22 6 6.3009 -9.4700 0.0162 23 6 6.6167 -10.8112 -0.5941 24 6 7.2873 -11.8885 0.0293 25 6 7.3179 -12.8505 -0.9238 26 8 6.7124 -12.3350 -2.0029 27 7 6.3310 -11.2054 -1.8013 28 6 7.7781 -6.1120 -0.5906 29 1 -0.4850 0.8400 0.0004 30 1 3.6441 -3.4274 0.8990 31 1 3.6435 -3.4356 -0.8809 32 1 5.4292 -5.2432 0.0168 33 1 9.0916 -4.8676 1.4478 34 1 7.8119 -3.7071 1.8777 35 1 6.2449 -5.5858 2.2827 36 1 7.6948 -5.7315 3.3052 37 1 7.1116 -7.9092 2.2738 38 1 8.6825 -7.3210 1.6790 39 1 7.4724 -8.4511 -1.3358 40 1 6.2450 -9.5677 1.1003 41 1 5.3445 -9.1133 -0.3663 42 1 7.6818 -11.9346 1.0336 43 1 7.7492 -13.8365 -0.8336 44 1 7.4037 -6.1460 -1.6138 45 1 8.8532 -6.2915 -0.5907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713368327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:27 Heat of formation + Delta-G solvation = -10.146551 kcal Electronic energy + Delta-G solvation = -26386.305122 eV Core-core repulsion = 22531.708219 eV Total energy + Delta-G solvation = -3854.596902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.85583 -41.32151 -39.48228 -37.02146 -34.95240 -34.68653 -34.00160 -32.54794 -31.83095 -30.59882 -29.52431 -27.86229 -26.72583 -24.07464 -23.57741 -22.83853 -22.25071 -21.81941 -20.09771 -19.93798 -18.74222 -18.50406 -18.00890 -17.24243 -17.04686 -16.91115 -16.50443 -16.21453 -15.91851 -15.76216 -15.62473 -15.17226 -14.97033 -14.71745 -14.38660 -14.16997 -13.76961 -13.60238 -13.37949 -13.27946 -13.24555 -13.09497 -13.01888 -12.98531 -12.61113 -12.40138 -12.14119 -11.88059 -11.64348 -11.40874 -11.31067 -11.18674 -10.98974 -10.97138 -10.55773 -10.52916 -10.09529 -9.52618 -9.01221 -8.53184 -6.24050 0.65136 0.97444 1.30038 1.30157 1.45428 1.54773 1.56509 2.21401 2.25727 2.50378 2.70163 2.84924 2.99382 3.33118 3.60788 3.71603 3.76797 3.84279 4.01918 4.16020 4.19732 4.22322 4.27801 4.40816 4.42259 4.43240 4.49151 4.52578 4.63549 4.67869 4.69074 4.85466 4.92618 5.02096 5.11017 5.17386 5.20269 5.28834 5.32653 5.41633 5.57124 5.68937 5.92114 6.09510 6.23558 6.44140 6.91833 7.18664 7.37129 8.59238 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.002074 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.255616 B =13496.212636 C =14538.673126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.044 3.956 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.237 1.237 7 C -0.530 4.530 8 H 0.061 0.939 9 S -0.172 6.172 10 C -0.113 4.113 11 C 0.537 3.463 12 O -0.560 6.560 13 N -0.707 5.707 14 C 0.150 3.850 15 H 0.072 0.928 16 C -0.128 4.128 17 C -0.115 4.115 18 C -0.097 4.097 19 C 0.091 3.909 20 H 0.045 0.955 21 N -0.675 5.675 22 C 0.138 3.862 23 C 0.005 3.995 24 C -0.229 4.229 25 C -0.049 4.049 26 O 0.083 5.917 27 N -0.401 5.401 28 C -0.116 4.116 29 H 0.277 0.723 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.409 0.591 33 H 0.089 0.911 34 H 0.041 0.959 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.343 0.657 40 H 0.110 0.890 41 H 0.041 0.959 42 H 0.193 0.807 43 H 0.259 0.741 44 H 0.071 0.929 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.135 -28.276 2.762 34.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.160 1.160 7 C -0.677 4.677 8 H 0.079 0.921 9 S 0.054 5.946 10 C -0.264 4.264 11 C 0.322 3.678 12 O -0.438 6.438 13 N -0.361 5.361 14 C 0.045 3.955 15 H 0.091 0.909 16 C -0.167 4.167 17 C -0.153 4.153 18 C -0.135 4.135 19 C -0.019 4.019 20 H 0.063 0.937 21 N -0.307 5.307 22 C 0.009 3.991 23 C -0.153 4.153 24 C -0.251 4.251 25 C -0.130 4.130 26 O 0.018 5.982 27 N -0.107 5.107 28 C -0.155 4.155 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.247 0.753 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.161 0.839 40 H 0.128 0.872 41 H 0.059 0.941 42 H 0.210 0.790 43 H 0.275 0.725 44 H 0.089 0.911 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 21.035 -26.290 2.217 33.742 hybrid contribution -2.013 -0.368 0.080 2.048 sum 19.023 -26.658 2.297 32.830 Atomic orbital electron populations 1.70017 1.07301 1.29042 1.49109 1.25586 0.95308 1.02318 0.92893 0.85853 0.80675 0.79531 0.80219 1.18716 1.18262 1.16040 1.22462 0.90327 0.96649 1.58288 0.92084 1.84683 1.06314 1.06026 1.97570 1.23285 0.96250 0.99728 1.07160 1.19893 0.89188 0.83531 0.75140 1.90683 1.59186 1.43743 1.50183 1.45929 1.08620 1.06454 1.75087 1.20970 0.79753 0.97508 0.97241 0.90941 1.21896 1.01301 0.98878 0.94592 1.21475 1.00293 0.94268 0.99259 1.21468 1.02292 0.95981 0.93718 1.21525 0.97832 0.87017 0.95479 0.93715 1.60530 1.44994 1.07767 1.17385 1.20277 0.92730 0.85224 1.00917 1.23850 1.00760 0.99823 0.90893 1.23070 1.05547 0.92426 1.04053 1.26887 0.98229 1.02843 0.85008 1.84796 1.55193 1.20826 1.37350 1.73874 1.20194 0.96646 1.19999 1.21908 1.03318 0.91489 0.98740 0.91353 0.87054 0.87238 0.75329 0.89292 0.93961 0.92846 0.90984 0.91213 0.90611 0.83878 0.87221 0.94067 0.78967 0.72522 0.91068 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.15 13.97 21.65 0.30 -55.85 16 2 C 0.04 2.62 5.50 84.86 0.47 3.09 16 3 Si 0.92 45.30 27.74 68.60 1.90 47.20 16 4 H -0.26 -12.68 7.11 99.48 0.71 -11.98 16 5 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.24 -11.68 6.74 99.48 0.67 -11.00 16 7 C -0.53 -31.07 10.04 67.95 0.68 -30.38 16 8 H 0.06 3.78 8.03 -2.91 -0.02 3.75 16 9 S -0.17 -8.76 18.55 -56.49 -1.05 -9.81 16 10 C -0.11 -4.29 6.16 71.24 0.44 -3.85 16 11 C 0.54 18.29 7.81 87.66 0.68 18.97 16 12 O -0.56 -23.66 15.52 -3.02 -0.05 -23.70 16 13 N -0.71 -16.41 4.23 -442.55 -1.87 -18.28 16 14 C 0.15 2.98 2.78 44.99 0.13 3.10 16 15 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 16 C -0.13 -2.40 5.60 30.60 0.17 -2.23 16 17 C -0.11 -1.75 5.77 30.60 0.18 -1.57 16 18 C -0.10 -1.14 5.43 30.59 0.17 -0.97 16 19 C 0.09 1.12 2.32 44.92 0.10 1.22 16 20 H 0.04 0.58 6.16 -2.39 -0.01 0.57 16 21 N -0.67 -8.53 6.30 -495.56 -3.12 -11.65 16 22 C 0.14 1.79 6.07 85.56 0.52 2.31 16 23 C 0.01 0.08 6.84 43.58 0.30 0.38 16 24 C -0.23 -2.19 11.12 22.40 0.25 -1.94 16 25 C -0.05 -0.36 12.30 67.18 0.83 0.47 16 26 O 0.08 1.28 11.20 71.60 0.80 2.08 16 27 N -0.40 -7.75 12.07 -49.56 -0.60 -8.35 16 28 C -0.12 -1.58 4.88 30.60 0.15 -1.43 16 29 H 0.28 15.68 8.31 -92.71 -0.77 14.90 16 30 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 31 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 32 H 0.41 7.45 6.87 -92.71 -0.64 6.82 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 34 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 0.93 7.60 -2.39 -0.02 0.91 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 0.74 7.45 -2.39 -0.02 0.72 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.34 4.79 8.34 -89.69 -0.75 4.04 16 40 H 0.11 1.10 7.44 -2.39 -0.02 1.08 16 41 H 0.04 0.61 8.05 -2.38 -0.02 0.59 16 42 H 0.19 0.85 8.06 -2.91 -0.02 0.83 16 43 H 0.26 -0.78 8.06 -2.91 -0.02 -0.80 16 44 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 45 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -77.16 380.21 0.98 -76.19 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -0.40 Total: 15.01 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 5.06 Total: -12.84 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -5.29 Total: -94.13 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: 0.75 Total: -21.62 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.90 Total: 47.20 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.05 Total: -9.81 kcal Total: -77.16 0.98 -76.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713368327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.040 kcal (2) G-P(sol) polarization free energy of solvation -77.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds