Wall clock time and date at job start Tue Mar 31 2020 22:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86806 * 119.99739 * 2 1 4 4 H 1.48498 * 109.47092 * 240.00154 * 3 2 1 5 5 H 1.48502 * 109.46735 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46995 * 120.00069 * 3 2 1 7 7 C 1.38800 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00030 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00000 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99879 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47043 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99813 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00073 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00132 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.46910 * 35.00644 * 14 13 11 16 16 C 1.52997 * 109.47417 * 275.00688 * 14 13 11 17 17 C 1.52996 * 109.47165 * 299.99920 * 16 14 13 18 18 C 1.53002 * 109.46972 * 300.00293 * 17 16 14 19 19 C 1.52997 * 109.47415 * 59.99860 * 18 17 16 20 20 H 1.09000 * 109.47140 * 59.99976 * 19 18 17 21 21 N 1.46902 * 109.47489 * 180.02562 * 19 18 17 22 22 C 1.46897 * 110.99928 * 275.00292 * 21 19 18 23 23 C 1.50697 * 109.47673 * 179.97438 * 22 21 19 24 24 C 1.41380 * 126.80351 * 94.70219 * 23 22 21 25 25 C 1.35451 * 103.98323 * 179.89218 * 24 23 22 26 26 O 1.34038 * 106.44969 * 0.37371 * 25 24 23 27 27 N 1.20925 * 111.56680 * 359.74333 * 26 25 24 28 28 C 1.52999 * 109.47050 * 154.99976 * 14 13 11 29 29 H 0.96993 * 120.00428 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47061 * 60.00497 * 10 9 7 31 31 H 1.09002 * 109.47165 * 299.99748 * 10 9 7 32 32 H 0.96997 * 120.00151 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.47140 * 179.97438 * 16 14 13 34 34 H 1.09001 * 109.47375 * 59.99948 * 16 14 13 35 35 H 1.08992 * 109.47534 * 180.02562 * 17 16 14 36 36 H 1.08996 * 109.47134 * 59.99508 * 17 16 14 37 37 H 1.09000 * 109.46986 * 299.99742 * 18 17 16 38 38 H 1.09001 * 109.47601 * 180.02562 * 18 17 16 39 39 H 1.00906 * 110.99860 * 38.95176 * 21 19 18 40 40 H 1.09010 * 109.47165 * 299.99811 * 22 21 19 41 41 H 1.08999 * 109.47241 * 59.99390 * 22 21 19 42 42 H 1.07995 * 128.00557 * 0.02680 * 24 23 22 43 43 H 1.08002 * 126.77393 * 180.09407 * 25 24 23 44 44 H 1.08993 * 109.47839 * 300.00709 * 28 14 13 45 45 H 1.09000 * 109.47160 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7280 0.0019 10 6 2.5161 -3.8913 0.0029 11 6 1.9877 -5.3027 0.0036 12 8 0.7914 -5.5023 0.0029 13 7 2.8445 -6.3430 0.0039 14 6 2.3309 -7.7150 0.0050 15 1 1.4149 -7.7605 -0.5840 16 6 2.0348 -8.1476 1.4424 17 6 3.3205 -8.0837 2.2693 18 6 4.3658 -9.0201 1.6599 19 6 4.6619 -8.5875 0.2225 20 1 5.0441 -7.5667 0.2217 21 7 5.6651 -9.4869 -0.3629 22 6 7.0257 -9.0530 -0.0188 23 6 8.0252 -9.9978 -0.6348 24 6 8.6876 -9.8402 -1.8738 25 6 9.4708 -10.9412 -1.9686 26 8 9.2485 -11.6617 -0.8604 27 7 8.4454 -11.1235 -0.1340 28 6 3.3761 -8.6514 -0.6044 29 1 -0.4850 0.8399 -0.0004 30 1 3.1246 -3.7305 0.8928 31 1 3.1247 -3.7320 -0.8872 32 1 3.8013 -6.1834 0.0041 33 1 1.6522 -9.1683 1.4432 34 1 1.2901 -7.4805 1.8766 35 1 3.1098 -8.3923 3.2932 36 1 3.7027 -7.0630 2.2684 37 1 3.9837 -10.0409 1.6607 38 1 5.2817 -8.9750 2.2492 39 1 5.5065 -10.4412 -0.0759 40 1 7.1936 -8.0461 -0.4012 41 1 7.1446 -9.0546 1.0646 42 1 8.5929 -9.0287 -2.5800 43 1 10.1389 -11.1916 -2.7794 44 1 3.5871 -8.3433 -1.6284 45 1 2.9938 -9.6722 -0.6040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713368328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:31 Heat of formation + Delta-G solvation = 13.921588 kcal Electronic energy + Delta-G solvation = -26342.084142 eV Core-core repulsion = 22488.530912 eV Total energy + Delta-G solvation = -3853.553229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.32293 -40.21585 -38.35854 -36.25654 -34.16086 -32.99982 -32.42508 -32.04473 -30.65781 -29.72931 -28.23364 -26.05263 -25.47599 -23.53120 -22.76090 -22.05907 -21.48404 -20.95675 -19.26936 -18.21843 -17.96679 -17.85261 -16.60128 -16.26801 -15.84666 -15.56946 -15.14910 -15.02444 -14.86596 -14.80296 -14.07759 -14.00089 -13.90169 -13.46772 -13.28619 -13.08992 -12.83142 -12.74127 -12.49035 -12.26236 -12.21451 -11.94342 -11.70514 -11.43681 -11.04536 -11.04153 -10.96895 -10.78639 -10.75409 -10.61863 -10.33425 -10.05592 -9.81772 -9.35510 -9.06162 -8.92488 -8.76339 -8.23225 -6.49329 -6.21268 -3.91718 1.09947 1.78836 2.86654 3.05820 3.12730 3.23215 3.27558 3.31763 3.57294 3.74690 3.90948 4.12090 4.20792 4.40127 4.48630 4.72285 4.75798 4.83984 4.90476 4.96015 4.98429 5.05915 5.13648 5.15491 5.22419 5.27889 5.34482 5.38459 5.43237 5.58300 5.60346 5.67547 5.72280 5.79306 5.88792 5.97348 6.06590 6.12290 6.14485 6.20347 6.52307 6.72248 6.86448 7.59302 7.74712 7.84629 8.35134 8.65544 9.23818 10.86045 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.002087 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.543556 B =13414.191713 C =14769.186927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.732 5.732 14 C 0.149 3.851 15 H 0.091 0.909 16 C -0.132 4.132 17 C -0.113 4.113 18 C -0.148 4.148 19 C 0.088 3.912 20 H 0.080 0.920 21 N -0.678 5.678 22 C 0.136 3.864 23 C 0.020 3.980 24 C -0.217 4.217 25 C -0.063 4.063 26 O 0.099 5.901 27 N -0.364 5.364 28 C -0.112 4.112 29 H 0.269 0.731 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.394 0.606 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.345 0.655 40 H 0.097 0.903 41 H 0.050 0.950 42 H 0.173 0.827 43 H 0.217 0.783 44 H 0.078 0.922 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.157 -23.327 -1.682 29.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.392 6.392 13 N -0.387 5.387 14 C 0.043 3.957 15 H 0.109 0.891 16 C -0.171 4.171 17 C -0.152 4.152 18 C -0.187 4.187 19 C -0.022 4.022 20 H 0.098 0.902 21 N -0.308 5.308 22 C 0.006 3.994 23 C -0.139 4.139 24 C -0.239 4.239 25 C -0.144 4.144 26 O 0.031 5.969 27 N -0.067 5.067 28 C -0.150 4.150 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.229 0.771 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.163 0.837 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.190 0.810 43 H 0.233 0.767 44 H 0.096 0.904 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.725 -23.905 -1.173 28.638 hybrid contribution 2.649 1.692 0.194 3.149 sum 18.374 -22.214 -0.980 28.845 Atomic orbital electron populations 1.70005 1.05932 1.27551 1.46787 1.24992 0.95029 0.99006 0.94568 0.86232 0.79243 0.81290 0.78777 1.19950 1.20815 1.19965 1.22825 0.94850 0.91720 1.59020 0.91032 1.85392 1.04933 0.96251 1.96706 1.23536 1.06536 0.95632 1.04766 1.20289 0.86596 0.86275 0.74982 1.90697 1.15354 1.85573 1.47558 1.46128 1.09638 1.05327 1.77576 1.20865 0.97505 0.81010 0.96287 0.89125 1.21946 0.97823 1.01739 0.95605 1.21420 0.95141 0.99745 0.98866 1.22283 0.99463 1.00246 0.96741 1.21614 0.92086 0.96623 0.91879 0.90206 1.60606 1.00602 1.06632 1.63011 1.20237 0.85543 0.95915 0.97680 1.23547 1.00874 0.94864 0.94657 1.22765 1.00291 1.01845 0.98973 1.26050 1.02720 0.92875 0.92768 1.84836 1.45184 1.42101 1.24734 1.73856 1.05961 1.10052 1.16879 1.21766 0.93506 0.99991 0.99747 0.92137 0.89407 0.89336 0.77117 0.91317 0.90851 0.91954 0.91591 0.91613 0.92215 0.83675 0.88495 0.93148 0.80969 0.76685 0.90370 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 11 C 0.53 9.67 7.81 -10.99 -0.09 9.58 16 12 O -0.52 -11.51 15.52 5.55 0.09 -11.42 16 13 N -0.73 -9.33 4.23 -53.80 -0.23 -9.55 16 14 C 0.15 1.66 2.78 -67.93 -0.19 1.47 16 15 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 16 C -0.13 -1.41 5.60 -26.73 -0.15 -1.56 16 17 C -0.11 -1.04 5.77 -26.73 -0.15 -1.19 16 18 C -0.15 -1.12 5.17 -26.73 -0.14 -1.25 16 19 C 0.09 0.66 2.30 -67.71 -0.16 0.50 16 20 H 0.08 0.60 6.16 -51.93 -0.32 0.28 16 21 N -0.68 -5.05 6.24 -107.99 -0.67 -5.73 16 22 C 0.14 0.99 6.07 -4.98 -0.03 0.96 16 23 C 0.02 0.16 6.84 -82.10 -0.56 -0.40 16 24 C -0.22 -1.36 11.12 -39.38 -0.44 -1.80 16 25 C -0.06 -0.32 12.30 29.74 0.37 0.05 16 26 O 0.10 0.79 11.20 17.18 0.19 0.98 16 27 N -0.36 -3.50 12.07 33.42 0.40 -3.09 16 28 C -0.11 -0.95 5.21 -26.73 -0.14 -1.09 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 31 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 32 H 0.39 4.05 6.87 -40.82 -0.28 3.77 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.66 7.60 -51.93 -0.39 0.27 16 37 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 38 H 0.06 0.44 7.46 -51.93 -0.39 0.06 16 39 H 0.34 2.65 8.46 -39.29 -0.33 2.32 16 40 H 0.10 0.61 8.06 -51.92 -0.42 0.20 16 41 H 0.05 0.37 7.44 -51.93 -0.39 -0.01 16 42 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.22 0.14 8.06 -52.49 -0.42 -0.28 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -34.93 383.03 -8.89 -43.82 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.68 Total: 2.62 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -1.26 Total: -10.50 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.24 Total: -43.78 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.28 Total: -10.44 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.93 -8.89 -43.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713368328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.743 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds