Wall clock time and date at job start Tue Mar 31 2020 22:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86806 * 119.99739 * 2 1 4 4 H 1.48498 * 109.47092 * 240.00154 * 3 2 1 5 5 H 1.48502 * 109.46735 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46995 * 120.00069 * 3 2 1 7 7 C 1.38800 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00030 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00000 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99879 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47043 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99813 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00073 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00132 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.46910 * 35.00644 * 14 13 11 16 16 C 1.52997 * 109.47417 * 275.00688 * 14 13 11 17 17 C 1.52996 * 109.47165 * 299.99920 * 16 14 13 18 18 C 1.53002 * 109.46972 * 300.00293 * 17 16 14 19 19 C 1.52997 * 109.47415 * 59.99860 * 18 17 16 20 20 H 1.09000 * 109.47140 * 59.99976 * 19 18 17 21 21 N 1.46902 * 109.47489 * 180.02562 * 19 18 17 22 22 C 1.46897 * 110.99928 * 275.00292 * 21 19 18 23 23 C 1.50697 * 109.47673 * 179.97438 * 22 21 19 24 24 C 1.41380 * 126.80351 * 94.70219 * 23 22 21 25 25 C 1.35451 * 103.98323 * 179.89218 * 24 23 22 26 26 O 1.34038 * 106.44969 * 0.37371 * 25 24 23 27 27 N 1.20925 * 111.56680 * 359.74333 * 26 25 24 28 28 C 1.52999 * 109.47050 * 154.99976 * 14 13 11 29 29 H 0.96993 * 120.00428 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47061 * 60.00497 * 10 9 7 31 31 H 1.09002 * 109.47165 * 299.99748 * 10 9 7 32 32 H 0.96997 * 120.00151 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.47140 * 179.97438 * 16 14 13 34 34 H 1.09001 * 109.47375 * 59.99948 * 16 14 13 35 35 H 1.08992 * 109.47534 * 180.02562 * 17 16 14 36 36 H 1.08996 * 109.47134 * 59.99508 * 17 16 14 37 37 H 1.09000 * 109.46986 * 299.99742 * 18 17 16 38 38 H 1.09001 * 109.47601 * 180.02562 * 18 17 16 39 39 H 1.00906 * 110.99860 * 38.95176 * 21 19 18 40 40 H 1.09010 * 109.47165 * 299.99811 * 22 21 19 41 41 H 1.08999 * 109.47241 * 59.99390 * 22 21 19 42 42 H 1.07995 * 128.00557 * 0.02680 * 24 23 22 43 43 H 1.08002 * 126.77393 * 180.09407 * 25 24 23 44 44 H 1.08993 * 109.47839 * 300.00709 * 28 14 13 45 45 H 1.09000 * 109.47160 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7280 0.0019 10 6 2.5161 -3.8913 0.0029 11 6 1.9877 -5.3027 0.0036 12 8 0.7914 -5.5023 0.0029 13 7 2.8445 -6.3430 0.0039 14 6 2.3309 -7.7150 0.0050 15 1 1.4149 -7.7605 -0.5840 16 6 2.0348 -8.1476 1.4424 17 6 3.3205 -8.0837 2.2693 18 6 4.3658 -9.0201 1.6599 19 6 4.6619 -8.5875 0.2225 20 1 5.0441 -7.5667 0.2217 21 7 5.6651 -9.4869 -0.3629 22 6 7.0257 -9.0530 -0.0188 23 6 8.0252 -9.9978 -0.6348 24 6 8.6876 -9.8402 -1.8738 25 6 9.4708 -10.9412 -1.9686 26 8 9.2485 -11.6617 -0.8604 27 7 8.4454 -11.1235 -0.1340 28 6 3.3761 -8.6514 -0.6044 29 1 -0.4850 0.8399 -0.0004 30 1 3.1246 -3.7305 0.8928 31 1 3.1247 -3.7320 -0.8872 32 1 3.8013 -6.1834 0.0041 33 1 1.6522 -9.1683 1.4432 34 1 1.2901 -7.4805 1.8766 35 1 3.1098 -8.3923 3.2932 36 1 3.7027 -7.0630 2.2684 37 1 3.9837 -10.0409 1.6607 38 1 5.2817 -8.9750 2.2492 39 1 5.5065 -10.4412 -0.0759 40 1 7.1936 -8.0461 -0.4012 41 1 7.1446 -9.0546 1.0646 42 1 8.5929 -9.0287 -2.5800 43 1 10.1389 -11.1916 -2.7794 44 1 3.5871 -8.3433 -1.6284 45 1 2.9938 -9.6722 -0.6040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713368328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:30 Heat of formation + Delta-G solvation = -10.895490 kcal Electronic energy + Delta-G solvation = -26343.160291 eV Core-core repulsion = 22488.530912 eV Total energy + Delta-G solvation = -3854.629379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.84435 -41.27609 -39.48236 -37.01393 -34.96417 -34.57548 -33.91877 -32.54127 -31.76035 -30.56123 -29.46690 -27.64026 -26.65707 -24.02315 -23.57549 -22.81768 -22.30867 -21.83435 -20.24087 -19.85659 -18.72918 -18.49645 -17.93135 -17.18176 -16.93820 -16.87184 -16.36859 -16.09609 -15.95251 -15.73380 -15.57394 -14.94903 -14.70491 -14.53181 -14.42003 -14.07359 -13.82271 -13.61611 -13.35014 -13.24363 -13.16209 -13.13263 -12.96377 -12.86215 -12.60148 -12.28125 -12.16533 -11.78076 -11.72684 -11.46557 -11.34187 -11.12311 -11.01571 -10.89132 -10.52372 -10.26565 -10.06026 -9.42819 -8.65534 -8.33741 -6.11679 0.64806 1.27904 1.30128 1.44075 1.47609 1.57422 1.65933 2.27244 2.33815 2.49765 3.00072 3.01594 3.32964 3.35854 3.65340 3.72530 3.75803 3.94828 4.04312 4.15777 4.17023 4.28523 4.30884 4.38686 4.45238 4.48803 4.51549 4.54543 4.63536 4.65489 4.71579 4.80089 4.92389 5.03776 5.09782 5.10101 5.19996 5.25477 5.32022 5.35937 5.42103 5.60182 5.92244 6.20224 6.27234 6.54060 7.07287 7.29336 7.36310 8.75103 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.002087 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.543556 B =13414.191713 C =14769.186927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.130 4.130 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.705 5.705 14 C 0.149 3.851 15 H 0.068 0.932 16 C -0.129 4.129 17 C -0.109 4.109 18 C -0.140 4.140 19 C 0.094 3.906 20 H 0.083 0.917 21 N -0.676 5.676 22 C 0.138 3.862 23 C 0.007 3.993 24 C -0.233 4.233 25 C -0.048 4.048 26 O 0.084 5.916 27 N -0.397 5.397 28 C -0.100 4.100 29 H 0.271 0.729 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.411 0.589 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.344 0.656 40 H 0.107 0.893 41 H 0.047 0.953 42 H 0.190 0.810 43 H 0.258 0.742 44 H 0.076 0.924 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.323 -23.885 -2.307 32.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.281 4.281 11 C 0.321 3.679 12 O -0.443 6.443 13 N -0.359 5.359 14 C 0.044 3.956 15 H 0.087 0.913 16 C -0.168 4.168 17 C -0.148 4.148 18 C -0.179 4.179 19 C -0.016 4.016 20 H 0.101 0.899 21 N -0.307 5.307 22 C 0.008 3.992 23 C -0.152 4.152 24 C -0.255 4.255 25 C -0.128 4.128 26 O 0.019 5.981 27 N -0.104 5.104 28 C -0.138 4.138 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.248 0.752 33 H 0.104 0.896 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.163 0.837 40 H 0.125 0.875 41 H 0.065 0.935 42 H 0.207 0.793 43 H 0.274 0.726 44 H 0.095 0.905 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.955 -24.511 -1.802 31.037 hybrid contribution 1.725 1.714 0.358 2.458 sum 20.680 -22.797 -1.444 30.813 Atomic orbital electron populations 1.70177 1.07959 1.28641 1.47978 1.26137 0.95977 1.03339 0.93796 0.85010 0.77805 0.75715 0.79503 1.18606 1.20463 1.18674 1.23169 0.95328 0.92036 1.58873 0.89929 1.85581 1.10582 0.99181 1.97037 1.23381 1.03516 0.94638 1.06609 1.20029 0.86300 0.86624 0.74961 1.90688 1.17402 1.86047 1.50203 1.45884 1.09876 1.04963 1.75204 1.20983 0.97700 0.80261 0.96700 0.91345 1.21896 0.97949 1.01852 0.95069 1.21378 0.94642 0.99801 0.98958 1.22207 0.99031 1.00057 0.96557 1.21525 0.91604 0.96925 0.91569 0.89871 1.60569 1.00679 1.06524 1.62897 1.20265 0.85150 0.96240 0.97529 1.23847 1.01131 0.94735 0.95495 1.23077 1.00629 1.02977 0.98769 1.26846 1.02004 0.91734 0.92254 1.84788 1.45096 1.42615 1.25623 1.73854 1.07279 1.11048 1.18192 1.21657 0.93073 0.99656 0.99428 0.92026 0.87442 0.87324 0.75173 0.89581 0.94199 0.91577 0.92431 0.90904 0.91624 0.83731 0.87472 0.93478 0.79322 0.72617 0.90511 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.08 13.22 21.65 0.29 -55.79 16 2 C 0.01 0.70 5.49 84.86 0.47 1.16 16 3 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.55 -31.12 9.50 67.95 0.65 -30.47 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 10 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 11 C 0.54 19.43 7.81 87.66 0.68 20.12 16 12 O -0.57 -26.01 15.52 -3.05 -0.05 -26.05 16 13 N -0.70 -17.18 4.23 -442.53 -1.87 -19.06 16 14 C 0.15 3.20 2.78 44.99 0.13 3.32 16 15 H 0.07 1.84 7.58 -2.39 -0.02 1.82 16 16 C -0.13 -2.68 5.60 30.59 0.17 -2.51 16 17 C -0.11 -1.84 5.77 30.59 0.18 -1.66 16 18 C -0.14 -1.77 5.17 30.59 0.16 -1.61 16 19 C 0.09 1.17 2.30 44.92 0.10 1.27 16 20 H 0.08 1.01 6.16 -2.39 -0.01 0.99 16 21 N -0.68 -8.55 6.24 -495.57 -3.09 -11.64 16 22 C 0.14 1.73 6.07 85.56 0.52 2.25 16 23 C 0.01 0.10 6.84 43.58 0.30 0.40 16 24 C -0.23 -2.40 11.12 22.40 0.25 -2.16 16 25 C -0.05 -0.36 12.30 67.18 0.83 0.47 16 26 O 0.08 1.23 11.20 71.65 0.80 2.04 16 27 N -0.40 -7.27 12.07 -49.55 -0.60 -7.87 16 28 C -0.10 -1.48 5.21 30.60 0.16 -1.32 16 29 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 30 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 31 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 32 H 0.41 7.47 6.87 -92.71 -0.64 6.84 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.04 1.10 8.14 -2.39 -0.02 1.09 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.07 7.60 -2.39 -0.02 1.05 16 37 H 0.07 0.86 8.13 -2.39 -0.02 0.85 16 38 H 0.07 0.81 7.46 -2.39 -0.02 0.79 16 39 H 0.34 4.58 8.46 -89.69 -0.76 3.82 16 40 H 0.11 1.10 8.06 -2.38 -0.02 1.08 16 41 H 0.05 0.62 7.44 -2.39 -0.02 0.60 16 42 H 0.19 1.16 8.06 -2.91 -0.02 1.14 16 43 H 0.26 -0.63 8.06 -2.91 -0.02 -0.66 16 44 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 45 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -79.25 383.03 0.99 -78.26 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -0.38 Total: 19.59 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 5.02 Total: -15.42 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -5.28 Total: -94.35 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: 0.75 Total: -24.02 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -79.25 0.99 -78.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713368328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.366 kcal (2) G-P(sol) polarization free energy of solvation -79.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds