Wall clock time and date at job start Tue Mar 31 2020 22:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86803 * 119.99627 * 2 1 4 4 H 1.48504 * 109.46732 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46944 * 299.99248 * 3 2 1 6 6 H 1.48494 * 109.47431 * 59.99701 * 3 2 1 7 7 C 1.38789 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00293 * 180.02562 * 7 2 1 9 9 S 1.76207 * 120.00232 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00183 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47449 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99744 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00145 * 180.02562 * 11 10 9 14 14 C 1.46918 * 120.63255 * 359.97438 * 13 11 10 15 15 C 1.53200 * 108.77483 * 126.41629 * 14 13 11 16 16 C 1.53033 * 109.30962 * 54.63977 * 15 14 13 17 17 C 1.53044 * 109.53888 * 298.63118 * 16 15 14 18 18 H 1.09003 * 109.49916 * 301.38536 * 17 16 15 19 19 C 1.52997 * 109.50177 * 181.32043 * 17 16 15 20 20 N 1.46893 * 109.47519 * 175.00210 * 19 17 16 21 21 C 1.46893 * 111.00327 * 180.02562 * 20 19 17 22 22 C 1.50702 * 109.47516 * 179.97438 * 21 20 19 23 23 C 1.41379 * 126.80093 * 94.70494 * 22 21 20 24 24 C 1.35446 * 103.98652 * 180.26598 * 23 22 21 25 25 O 1.34044 * 106.44743 * 0.02562 * 24 23 22 26 26 N 1.20918 * 111.56370 * 359.97438 * 25 24 23 27 27 C 1.46927 * 120.62894 * 180.02562 * 13 11 10 28 28 H 0.97005 * 120.00176 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47418 * 59.99372 * 10 9 7 30 30 H 1.09005 * 109.46926 * 300.00270 * 10 9 7 31 31 H 1.09005 * 109.58514 * 6.63048 * 14 13 11 32 32 H 1.08994 * 109.59176 * 246.20544 * 14 13 11 33 33 H 1.08997 * 109.49397 * 294.68252 * 15 14 13 34 34 H 1.09002 * 109.51999 * 174.60206 * 15 14 13 35 35 H 1.09002 * 109.45808 * 178.61414 * 16 15 14 36 36 H 1.08999 * 109.46385 * 58.65525 * 16 15 14 37 37 H 1.08998 * 109.46930 * 55.00065 * 19 17 16 38 38 H 1.09003 * 109.47118 * 295.00561 * 19 17 16 39 39 H 1.00906 * 110.99831 * 56.04399 * 20 19 17 40 40 H 1.08995 * 109.47476 * 59.99668 * 21 20 19 41 41 H 1.09006 * 109.46874 * 299.99916 * 21 20 19 42 42 H 1.08001 * 128.00721 * 0.25149 * 23 22 21 43 43 H 1.08004 * 126.77893 * 180.02562 * 24 23 22 44 44 H 1.09004 * 109.58509 * 113.79262 * 27 13 11 45 45 H 1.09002 * 109.58699 * 353.37564 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3966 1.2124 7 6 2.0103 -1.2019 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3430 0.0003 14 6 4.2960 -6.1172 0.0008 15 6 4.9151 -6.8922 1.1684 16 6 4.5081 -8.3642 1.0712 17 6 2.9852 -8.4816 1.1671 18 1 2.6459 -8.0522 2.1098 19 6 2.5815 -9.9559 1.1029 20 7 1.1329 -10.0767 1.3148 21 6 0.7082 -11.4818 1.2604 22 6 -0.7800 -11.5659 1.4821 23 6 -1.7833 -11.6108 0.4870 24 6 -2.9391 -11.6754 1.1902 25 8 -2.5961 -11.6661 2.4859 26 7 -1.3968 -11.6053 2.6277 27 6 2.3442 -7.7246 -0.0009 28 1 -0.4851 0.8401 -0.0004 29 1 3.1246 -3.7313 0.8905 30 1 3.1245 -3.7313 -0.8895 31 1 4.5002 -5.0531 0.1194 32 1 4.7212 -6.4705 -0.9386 33 1 4.5576 -6.4772 2.1107 34 1 6.0013 -6.8114 1.1240 35 1 4.9674 -8.9226 1.8869 36 1 4.8444 -8.7718 0.1178 37 1 3.1096 -10.5113 1.8780 38 1 2.8407 -10.3614 0.1249 39 1 0.6221 -9.5181 0.6476 40 1 1.2233 -12.0475 2.0367 41 1 0.9545 -11.8982 0.2835 42 1 -1.6573 -11.5966 -0.5855 43 1 -3.9397 -11.7246 0.7866 44 1 2.6104 -8.2087 -0.9405 45 1 1.2606 -7.7211 0.1165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714058542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:08 Heat of formation + Delta-G solvation = 23.394092 kcal Electronic energy + Delta-G solvation = -26369.560964 eV Core-core repulsion = 22516.418493 eV Total energy + Delta-G solvation = -3853.142471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.17062 -40.05059 -37.90163 -36.53711 -34.37931 -32.80507 -32.42079 -31.94215 -31.37370 -29.35616 -27.18132 -25.59519 -25.01991 -24.60757 -23.34251 -21.94990 -21.41793 -20.51946 -19.08545 -18.07307 -17.76774 -17.65843 -16.77788 -16.40836 -15.69284 -15.32905 -15.19951 -14.92688 -14.79974 -14.60830 -14.42049 -13.93765 -13.77956 -13.57518 -13.40134 -13.21795 -12.99276 -12.65443 -12.60232 -12.41045 -11.88840 -11.78007 -11.52763 -11.29548 -11.07195 -11.01953 -11.01122 -10.88050 -10.75855 -10.64222 -10.43453 -9.90174 -9.78442 -9.33234 -9.06837 -8.80452 -8.49071 -8.20811 -6.49080 -6.21018 -3.91441 1.26796 1.91265 2.94204 3.01965 3.07466 3.21850 3.26608 3.31471 3.60822 3.74426 3.94996 4.20626 4.30079 4.49520 4.58562 4.66556 4.82260 4.84623 4.90844 4.97342 5.04267 5.05045 5.14134 5.17879 5.27481 5.29566 5.36874 5.40884 5.43226 5.48677 5.59041 5.66863 5.69403 5.70292 5.82271 5.89422 5.92937 5.99437 6.12548 6.20196 6.58707 6.66158 6.97952 7.57807 7.60677 8.03451 8.35974 8.58331 9.24324 10.86446 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012819 B = 0.002320 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.675098 B =12063.996839 C =13888.027539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.150 4.150 11 C 0.535 3.465 12 O -0.516 6.516 13 N -0.619 5.619 14 C 0.107 3.893 15 C -0.135 4.135 16 C -0.111 4.111 17 C -0.102 4.102 18 H 0.087 0.913 19 C 0.070 3.930 20 N -0.685 5.685 21 C 0.139 3.861 22 C 0.014 3.986 23 C -0.232 4.232 24 C -0.058 4.058 25 O 0.102 5.898 26 N -0.346 5.346 27 C 0.117 3.883 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.348 0.652 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.171 0.829 43 H 0.217 0.783 44 H 0.058 0.942 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.855 -25.942 -0.669 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.300 4.300 11 C 0.323 3.677 12 O -0.391 6.391 13 N -0.355 5.355 14 C -0.016 4.016 15 C -0.174 4.174 16 C -0.149 4.149 17 C -0.122 4.122 18 H 0.105 0.895 19 C -0.059 4.059 20 N -0.319 5.319 21 C 0.010 3.990 22 C -0.146 4.146 23 C -0.254 4.254 24 C -0.139 4.139 25 O 0.033 5.967 26 N -0.048 5.048 27 C -0.006 4.006 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.168 0.832 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.188 0.812 43 H 0.233 0.767 44 H 0.077 0.923 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.375 -26.101 1.289 26.496 hybrid contribution 1.952 1.139 -1.950 2.985 sum 6.326 -24.961 -0.661 25.759 Atomic orbital electron populations 1.70034 1.05942 1.27321 1.46971 1.24996 0.95031 0.99031 0.94577 0.86118 0.79574 0.81909 0.77900 1.19626 1.20573 1.20562 1.22895 0.94899 0.91619 1.58777 0.90918 1.85416 1.05048 0.96366 1.96681 1.23546 1.06424 0.95421 1.04641 1.20337 0.86220 0.86216 0.74952 1.90689 1.15180 1.85215 1.47981 1.48050 1.06377 1.05558 1.75488 1.21725 0.80057 1.01594 0.98253 1.21916 1.00565 0.95450 0.99420 1.21507 0.94686 0.96642 1.02065 1.21582 0.95655 0.94463 1.00516 0.89465 1.21957 0.87690 0.96351 0.99932 1.60392 1.05388 1.08058 1.58038 1.20125 0.86751 0.90953 1.01202 1.23481 0.98530 1.03948 0.88605 1.22775 0.91478 1.09230 1.01946 1.26044 1.01774 1.02902 0.83208 1.84874 1.18320 1.66567 1.26902 1.73872 0.89740 1.17349 1.23829 1.21552 1.00620 0.81536 0.96903 0.92249 0.89285 0.89341 0.89199 0.91626 0.91148 0.90636 0.91569 0.91836 0.90440 0.94781 0.83223 0.89260 0.92813 0.81196 0.76670 0.92330 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.26 9.50 30.94 0.29 -14.97 16 8 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.08 4.50 36.00 0.16 -2.92 16 11 C 0.53 10.34 7.72 -10.99 -0.08 10.26 16 12 O -0.52 -11.96 15.27 5.55 0.08 -11.88 16 13 N -0.62 -8.84 2.97 -172.74 -0.51 -9.35 16 14 C 0.11 1.16 6.34 -3.71 -0.02 1.14 16 15 C -0.14 -1.20 6.08 -26.61 -0.16 -1.36 16 16 C -0.11 -0.88 5.17 -26.69 -0.14 -1.01 16 17 C -0.10 -1.00 2.55 -90.48 -0.23 -1.23 16 18 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 19 C 0.07 0.57 5.15 -3.83 -0.02 0.55 16 20 N -0.69 -6.72 6.49 -115.07 -0.75 -7.47 16 21 C 0.14 1.18 6.27 -4.98 -0.03 1.15 16 22 C 0.01 0.14 6.84 -82.10 -0.56 -0.42 16 23 C -0.23 -1.82 11.12 -39.38 -0.44 -2.26 16 24 C -0.06 -0.41 12.30 29.74 0.37 -0.04 16 25 O 0.10 1.06 11.20 17.17 0.19 1.25 16 26 N -0.35 -4.23 12.07 33.42 0.40 -3.83 16 27 C 0.12 1.40 5.35 -3.69 -0.02 1.38 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.09 1.71 7.69 -51.92 -0.40 1.31 16 30 H 0.09 1.68 7.94 -51.91 -0.41 1.27 16 31 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.35 3.60 7.12 -39.29 -0.28 3.32 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.22 0.57 8.06 -52.48 -0.42 0.15 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.09 1.31 5.82 -51.93 -0.30 1.01 16 LS Contribution 383.35 15.07 5.78 5.78 Total: -1.00 -36.35 383.35 -9.03 -45.38 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.74 Total: 0.88 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -0.98 Total: -7.74 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.12 Total: -46.21 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.28 Total: -10.63 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.35 -9.03 -45.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714058542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.772 kcal (2) G-P(sol) polarization free energy of solvation -36.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds