Wall clock time and date at job start Tue Mar 31 2020 22:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86808 * 119.99885 * 2 1 4 4 H 1.48495 * 109.47207 * 270.00159 * 3 2 1 5 5 H 1.48505 * 109.46842 * 30.00178 * 3 2 1 6 6 H 1.48495 * 109.47135 * 149.99730 * 3 2 1 7 7 C 1.38801 * 120.00541 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99673 * 0.02562 * 7 2 1 9 9 S 1.76193 * 120.00142 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00055 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47209 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99971 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99777 * 179.97438 * 11 10 9 14 14 C 1.46920 * 120.63466 * 359.97438 * 13 11 10 15 15 C 1.53191 * 108.77950 * 233.62732 * 14 13 11 16 16 C 1.53037 * 109.34017 * 305.38313 * 15 14 13 17 17 C 1.53039 * 109.54037 * 61.31153 * 16 15 14 18 18 H 1.09002 * 109.50008 * 58.65473 * 17 16 15 19 19 C 1.52998 * 109.49605 * 178.71815 * 17 16 15 20 20 N 1.46904 * 109.47141 * 184.93692 * 19 17 16 21 21 C 1.46898 * 110.99912 * 180.02562 * 20 19 17 22 22 C 1.50703 * 109.47065 * 179.97438 * 21 20 19 23 23 C 1.41375 * 126.80544 * 95.02069 * 22 21 20 24 24 C 1.35450 * 103.98779 * 180.02562 * 23 22 21 25 25 O 1.34034 * 106.44531 * 0.02562 * 24 23 22 26 26 N 1.20925 * 111.56886 * 359.97438 * 25 24 23 27 27 C 1.46931 * 120.62902 * 180.02562 * 13 11 10 28 28 H 0.97003 * 120.00364 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47052 * 59.99847 * 10 9 7 30 30 H 1.09008 * 109.46894 * 300.00289 * 10 9 7 31 31 H 1.09003 * 109.58586 * 353.41428 * 14 13 11 32 32 H 1.09003 * 109.58849 * 113.84075 * 14 13 11 33 33 H 1.09000 * 109.49530 * 65.31469 * 15 14 13 34 34 H 1.08994 * 109.50019 * 185.37599 * 15 14 13 35 35 H 1.09003 * 109.43054 * 301.30721 * 16 15 14 36 36 H 1.09003 * 109.48605 * 181.35520 * 16 15 14 37 37 H 1.09005 * 109.47381 * 64.93289 * 19 17 16 38 38 H 1.08995 * 109.47225 * 304.93658 * 19 17 16 39 39 H 1.00900 * 110.99988 * 303.95190 * 20 19 17 40 40 H 1.09001 * 109.47048 * 60.00000 * 21 20 19 41 41 H 1.08999 * 109.47094 * 299.99894 * 21 20 19 42 42 H 1.08003 * 128.00233 * 0.02562 * 23 22 21 43 43 H 1.08000 * 126.77667 * 180.02562 * 24 23 22 44 44 H 1.08995 * 109.58867 * 6.58681 * 27 13 11 45 45 H 1.08999 * 109.58922 * 246.15866 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0014 9 16 3.7723 -1.2019 -0.0012 10 6 4.0868 -2.9844 -0.0025 11 6 5.5732 -3.2323 -0.0026 12 8 6.3441 -2.2960 -0.0014 13 7 6.0459 -4.4944 -0.0030 14 6 5.1245 -5.6389 -0.0028 15 6 5.4858 -6.5625 1.1647 16 6 6.9643 -6.9460 1.0689 17 6 7.8271 -5.6856 1.1643 18 1 7.6248 -5.1766 2.1067 19 6 9.3058 -6.0731 1.1005 20 7 10.1346 -4.8785 1.3104 21 6 11.5639 -5.2131 1.2551 22 6 12.3807 -3.9655 1.4736 23 6 12.9207 -3.5104 2.6983 24 6 13.5592 -2.3624 2.3680 25 8 13.3825 -2.1956 1.0499 26 7 12.7278 -3.0930 0.5721 27 6 7.4924 -4.7521 -0.0026 28 1 -0.4851 0.8400 0.0004 29 1 3.6435 -3.4308 -0.8926 30 1 3.6441 -3.4321 0.8874 31 1 4.1008 -5.2838 0.1155 32 1 5.2183 -6.1837 -0.9422 33 1 5.3049 -6.0455 2.1070 34 1 4.8724 -7.4624 1.1199 35 1 7.1493 -7.4415 0.1158 36 1 7.2180 -7.6225 1.8850 37 1 9.5273 -6.5019 0.1231 38 1 9.5229 -6.8069 1.8767 39 1 9.9061 -4.1579 0.6421 40 1 11.8007 -5.6355 0.2786 41 1 11.7970 -5.9411 2.0322 42 1 12.8423 -3.9714 3.6718 43 1 14.1033 -1.7102 3.0351 44 1 8.0310 -3.8119 0.1159 45 1 7.7798 -5.2243 -0.9420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714058604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:12 Heat of formation + Delta-G solvation = 23.295097 kcal Electronic energy + Delta-G solvation = -26432.018645 eV Core-core repulsion = 22578.871882 eV Total energy + Delta-G solvation = -3853.146763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.21475 -40.12963 -37.97603 -36.58936 -34.43273 -32.87776 -32.42549 -31.98864 -31.42016 -29.48102 -27.23313 -25.67355 -25.14057 -24.64634 -23.42877 -22.00686 -21.35918 -20.58955 -19.16759 -18.16780 -17.81930 -17.65364 -16.85633 -16.34816 -15.68543 -15.46339 -15.33839 -15.21920 -14.93588 -14.75036 -14.18467 -13.88910 -13.78600 -13.53698 -13.38737 -13.28554 -13.04820 -12.79472 -12.71242 -12.56529 -12.01160 -11.85490 -11.62629 -11.32885 -11.24710 -11.07485 -10.99267 -10.91839 -10.72384 -10.54794 -10.46778 -9.95492 -9.84189 -9.43779 -8.99093 -8.86112 -8.56553 -8.46900 -6.90351 -6.27804 -3.99277 1.21664 1.88372 2.72689 2.96005 2.97818 3.21093 3.34767 3.52469 3.60438 3.67447 3.98564 4.19342 4.34424 4.44128 4.52762 4.60220 4.74675 4.79174 4.82945 4.90554 4.96464 5.00645 5.11065 5.11342 5.18554 5.19525 5.27344 5.35120 5.36958 5.42369 5.47015 5.63170 5.65265 5.68380 5.74626 5.80606 5.88325 5.93388 6.00545 6.15613 6.52973 6.58596 6.90949 7.49209 7.95212 7.96180 8.42336 8.46930 9.18580 10.81366 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011292 B = 0.002541 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.960082 B =11016.632112 C =13166.985876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.520 4.520 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.121 4.121 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.617 5.617 14 C 0.106 3.894 15 C -0.135 4.135 16 C -0.111 4.111 17 C -0.102 4.102 18 H 0.087 0.913 19 C 0.069 3.931 20 N -0.686 5.686 21 C 0.139 3.861 22 C 0.016 3.984 23 C -0.219 4.219 24 C -0.061 4.061 25 O 0.102 5.898 26 N -0.360 5.360 27 C 0.116 3.884 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.078 0.922 39 H 0.349 0.651 40 H 0.048 0.952 41 H 0.095 0.905 42 H 0.172 0.828 43 H 0.217 0.783 44 H 0.092 0.908 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.292 -16.958 5.280 30.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.271 4.271 11 C 0.321 3.679 12 O -0.393 6.393 13 N -0.353 5.353 14 C -0.018 4.018 15 C -0.173 4.173 16 C -0.149 4.149 17 C -0.121 4.121 18 H 0.105 0.895 19 C -0.061 4.061 20 N -0.319 5.319 21 C 0.009 3.991 22 C -0.143 4.143 23 C -0.240 4.240 24 C -0.143 4.143 25 O 0.034 5.966 26 N -0.064 5.064 27 C -0.007 4.007 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.169 0.831 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.189 0.811 43 H 0.233 0.767 44 H 0.111 0.889 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 25.008 -15.388 4.626 29.725 hybrid contribution -0.708 -0.751 0.026 1.033 sum 24.299 -16.139 4.652 29.539 Atomic orbital electron populations 1.69936 1.05903 1.27753 1.48140 1.24709 0.94447 0.98959 0.93183 0.86739 0.81925 0.83280 0.79948 1.19211 1.19942 1.15904 1.22308 0.88262 0.97507 1.58716 0.89413 1.84814 1.09258 1.00183 1.97397 1.23304 0.94132 1.04163 1.05514 1.20308 0.90642 0.81859 0.75113 1.90694 1.58719 1.41678 1.48160 1.48018 1.06291 1.05703 1.75243 1.21762 0.94289 0.87280 0.98445 1.21912 0.96385 0.99691 0.99340 1.21512 0.94657 0.96617 1.02148 1.21557 0.93459 0.96702 1.00421 0.89467 1.21971 0.92007 0.92028 1.00062 1.60495 1.02274 1.11226 1.57927 1.20155 0.86599 0.90818 1.01482 1.23512 1.01698 0.98965 0.90117 1.22713 1.03066 0.97959 1.00304 1.26050 1.02954 0.99706 0.85562 1.84848 1.52382 1.37959 1.21396 1.73869 1.09983 0.99110 1.23409 1.21553 0.81647 1.00377 0.97098 0.91954 0.88610 0.88529 0.89091 0.91457 0.91125 0.90507 0.91800 0.91496 0.94750 0.90324 0.83108 0.93345 0.88682 0.81081 0.76679 0.88945 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.72 13.97 55.49 0.78 -25.94 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 22.05 27.74 -169.99 -4.71 17.34 16 4 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.24 -6.07 6.74 56.52 0.38 -5.69 16 7 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 8 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 10 C -0.12 -2.40 4.50 36.00 0.16 -2.24 16 11 C 0.53 9.96 7.72 -10.99 -0.08 9.88 16 12 O -0.52 -11.61 15.28 5.55 0.08 -11.53 16 13 N -0.62 -8.57 2.97 -172.80 -0.51 -9.08 16 14 C 0.11 1.11 6.34 -3.71 -0.02 1.09 16 15 C -0.13 -1.14 6.08 -26.61 -0.16 -1.30 16 16 C -0.11 -0.83 5.17 -26.69 -0.14 -0.97 16 17 C -0.10 -0.94 2.54 -90.53 -0.23 -1.17 16 18 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 19 C 0.07 0.53 5.15 -3.82 -0.02 0.51 16 20 N -0.69 -6.43 6.49 -115.06 -0.75 -7.17 16 21 C 0.14 1.13 6.27 -4.98 -0.03 1.09 16 22 C 0.02 0.16 6.84 -82.10 -0.56 -0.40 16 23 C -0.22 -1.65 11.12 -39.38 -0.44 -2.09 16 24 C -0.06 -0.41 12.30 29.74 0.37 -0.04 16 25 O 0.10 1.03 11.20 17.19 0.19 1.22 16 26 N -0.36 -4.22 12.07 33.42 0.40 -3.81 16 27 C 0.12 1.38 5.35 -3.74 -0.02 1.36 16 28 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.10 1.78 7.94 -51.92 -0.41 1.37 16 30 H 0.10 1.79 7.69 -51.91 -0.40 1.39 16 31 H 0.09 1.00 5.93 -51.93 -0.31 0.69 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.35 3.85 7.11 -39.29 -0.28 3.57 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 43 H 0.22 0.47 8.06 -52.49 -0.42 0.05 16 44 H 0.09 1.32 5.81 -51.93 -0.30 1.02 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 380.64 15.07 5.74 5.74 Total: -1.00 -35.82 380.64 -8.52 -44.34 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.77 Total: 0.96 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -0.97 Total: -6.36 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.08 Total: -46.01 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.28 Total: -10.31 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.34 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.82 -8.52 -44.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714058604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.631 kcal (2) G-P(sol) polarization free energy of solvation -35.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds