Wall clock time and date at job start Tue Mar 31 2020 22:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86808 * 119.99885 * 2 1 4 4 H 1.48495 * 109.47207 * 270.00159 * 3 2 1 5 5 H 1.48505 * 109.46842 * 30.00178 * 3 2 1 6 6 H 1.48495 * 109.47135 * 149.99730 * 3 2 1 7 7 C 1.38801 * 120.00541 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99673 * 0.02562 * 7 2 1 9 9 S 1.76193 * 120.00142 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00055 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47209 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99971 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99777 * 179.97438 * 11 10 9 14 14 C 1.46920 * 120.63466 * 359.97438 * 13 11 10 15 15 C 1.53191 * 108.77950 * 233.62732 * 14 13 11 16 16 C 1.53037 * 109.34017 * 305.38313 * 15 14 13 17 17 C 1.53039 * 109.54037 * 61.31153 * 16 15 14 18 18 H 1.09002 * 109.50008 * 58.65473 * 17 16 15 19 19 C 1.52998 * 109.49605 * 178.71815 * 17 16 15 20 20 N 1.46904 * 109.47141 * 184.93692 * 19 17 16 21 21 C 1.46898 * 110.99912 * 180.02562 * 20 19 17 22 22 C 1.50703 * 109.47065 * 179.97438 * 21 20 19 23 23 C 1.41375 * 126.80544 * 95.02069 * 22 21 20 24 24 C 1.35450 * 103.98779 * 180.02562 * 23 22 21 25 25 O 1.34034 * 106.44531 * 0.02562 * 24 23 22 26 26 N 1.20925 * 111.56886 * 359.97438 * 25 24 23 27 27 C 1.46931 * 120.62902 * 180.02562 * 13 11 10 28 28 H 0.97003 * 120.00364 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47052 * 59.99847 * 10 9 7 30 30 H 1.09008 * 109.46894 * 300.00289 * 10 9 7 31 31 H 1.09003 * 109.58586 * 353.41428 * 14 13 11 32 32 H 1.09003 * 109.58849 * 113.84075 * 14 13 11 33 33 H 1.09000 * 109.49530 * 65.31469 * 15 14 13 34 34 H 1.08994 * 109.50019 * 185.37599 * 15 14 13 35 35 H 1.09003 * 109.43054 * 301.30721 * 16 15 14 36 36 H 1.09003 * 109.48605 * 181.35520 * 16 15 14 37 37 H 1.09005 * 109.47381 * 64.93289 * 19 17 16 38 38 H 1.08995 * 109.47225 * 304.93658 * 19 17 16 39 39 H 1.00900 * 110.99988 * 303.95190 * 20 19 17 40 40 H 1.09001 * 109.47048 * 60.00000 * 21 20 19 41 41 H 1.08999 * 109.47094 * 299.99894 * 21 20 19 42 42 H 1.08003 * 128.00233 * 0.02562 * 23 22 21 43 43 H 1.08000 * 126.77667 * 180.02562 * 24 23 22 44 44 H 1.08995 * 109.58867 * 6.58681 * 27 13 11 45 45 H 1.08999 * 109.58922 * 246.15866 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0014 9 16 3.7723 -1.2019 -0.0012 10 6 4.0868 -2.9844 -0.0025 11 6 5.5732 -3.2323 -0.0026 12 8 6.3441 -2.2960 -0.0014 13 7 6.0459 -4.4944 -0.0030 14 6 5.1245 -5.6389 -0.0028 15 6 5.4858 -6.5625 1.1647 16 6 6.9643 -6.9460 1.0689 17 6 7.8271 -5.6856 1.1643 18 1 7.6248 -5.1766 2.1067 19 6 9.3058 -6.0731 1.1005 20 7 10.1346 -4.8785 1.3104 21 6 11.5639 -5.2131 1.2551 22 6 12.3807 -3.9655 1.4736 23 6 12.9207 -3.5104 2.6983 24 6 13.5592 -2.3624 2.3680 25 8 13.3825 -2.1956 1.0499 26 7 12.7278 -3.0930 0.5721 27 6 7.4924 -4.7521 -0.0026 28 1 -0.4851 0.8400 0.0004 29 1 3.6435 -3.4308 -0.8926 30 1 3.6441 -3.4321 0.8874 31 1 4.1008 -5.2838 0.1155 32 1 5.2183 -6.1837 -0.9422 33 1 5.3049 -6.0455 2.1070 34 1 4.8724 -7.4624 1.1199 35 1 7.1493 -7.4415 0.1158 36 1 7.2180 -7.6225 1.8850 37 1 9.5273 -6.5019 0.1231 38 1 9.5229 -6.8069 1.8767 39 1 9.9061 -4.1579 0.6421 40 1 11.8007 -5.6355 0.2786 41 1 11.7970 -5.9411 2.0322 42 1 12.8423 -3.9714 3.6718 43 1 14.1033 -1.7102 3.0351 44 1 8.0310 -3.8119 0.1159 45 1 7.7798 -5.2243 -0.9420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714058604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:11 Heat of formation + Delta-G solvation = -2.049445 kcal Electronic energy + Delta-G solvation = -26433.117667 eV Core-core repulsion = 22578.871882 eV Total energy + Delta-G solvation = -3854.245785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.88218 -41.29536 -39.02281 -37.42484 -35.22583 -34.68996 -33.77429 -32.65276 -32.26878 -30.87925 -28.01609 -27.83722 -26.23092 -25.37865 -24.05878 -22.77650 -22.00691 -21.50070 -20.41695 -19.54288 -18.78431 -18.52445 -18.25124 -17.29879 -17.09659 -16.71043 -16.58677 -16.13611 -15.97448 -15.65576 -15.55273 -15.04795 -14.93331 -14.66769 -14.45354 -14.15964 -14.08508 -13.98830 -13.53392 -13.40935 -13.32916 -13.25833 -13.03840 -12.79096 -12.43899 -12.29729 -12.05430 -11.88861 -11.83953 -11.66760 -11.47128 -11.18993 -11.14046 -10.92029 -10.56483 -10.53664 -9.70778 -9.51265 -9.02891 -8.53248 -6.24447 0.62054 0.95073 1.27385 1.29452 1.44108 1.49211 1.52312 2.04639 2.23510 2.47428 2.66526 2.84851 3.07380 3.34708 3.48434 3.62623 3.77994 3.82475 3.96752 4.06454 4.15390 4.21810 4.24327 4.33448 4.37124 4.37950 4.49128 4.54256 4.62468 4.65073 4.69345 4.78709 4.83492 4.88825 4.93929 5.05098 5.15983 5.17244 5.25121 5.46301 5.53357 5.69311 5.92224 6.09466 6.12574 6.23828 6.91997 7.06058 7.33680 8.59059 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011292 B = 0.002541 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.960082 B =11016.632112 C =13166.985876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.257 1.257 6 H -0.240 1.240 7 C -0.527 4.527 8 H 0.064 0.936 9 S -0.180 6.180 10 C -0.104 4.104 11 C 0.531 3.469 12 O -0.566 6.566 13 N -0.604 5.604 14 C 0.095 3.905 15 C -0.131 4.131 16 C -0.106 4.106 17 C -0.091 4.091 18 H 0.063 0.937 19 C 0.074 3.926 20 N -0.698 5.698 21 C 0.141 3.859 22 C 0.002 3.998 23 C -0.230 4.230 24 C -0.051 4.051 25 O 0.081 5.919 26 N -0.403 5.403 27 C 0.114 3.886 28 H 0.277 0.723 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.098 0.902 39 H 0.335 0.665 40 H 0.048 0.952 41 H 0.118 0.882 42 H 0.195 0.805 43 H 0.259 0.741 44 H 0.063 0.937 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.762 -19.105 6.116 32.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.181 1.181 6 H -0.164 1.164 7 C -0.674 4.674 8 H 0.082 0.918 9 S 0.047 5.953 10 C -0.254 4.254 11 C 0.318 3.682 12 O -0.445 6.445 13 N -0.337 5.337 14 C -0.027 4.027 15 C -0.169 4.169 16 C -0.144 4.144 17 C -0.111 4.111 18 H 0.081 0.919 19 C -0.055 4.055 20 N -0.331 5.331 21 C 0.012 3.988 22 C -0.157 4.157 23 C -0.252 4.252 24 C -0.132 4.132 25 O 0.017 5.983 26 N -0.110 5.110 27 C -0.009 4.009 28 H 0.087 0.913 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.065 0.935 38 H 0.117 0.883 39 H 0.153 0.847 40 H 0.066 0.934 41 H 0.136 0.864 42 H 0.212 0.788 43 H 0.275 0.725 44 H 0.081 0.919 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 26.482 -17.595 5.474 32.262 hybrid contribution -1.126 -0.255 -0.207 1.173 sum 25.356 -17.851 5.268 31.454 Atomic orbital electron populations 1.70005 1.07178 1.29032 1.49077 1.25530 0.95275 1.02138 0.92904 0.85893 0.80642 0.79787 0.80210 1.18728 1.18100 1.16358 1.22422 0.89970 0.96747 1.58300 0.91811 1.84771 1.06764 1.06230 1.97558 1.23260 0.95824 0.99424 1.06931 1.20074 0.89576 0.83114 0.75426 1.90677 1.59307 1.43507 1.50964 1.48064 1.07911 1.04922 1.72836 1.22118 0.93228 0.86508 1.00853 1.21910 0.97729 0.99897 0.97352 1.21516 0.93194 0.95719 1.03922 1.21463 0.95173 0.96791 0.97689 0.91866 1.21996 0.90411 0.91646 1.01455 1.60547 1.03241 1.11688 1.57585 1.20258 0.85669 0.90617 1.02257 1.23993 1.01641 0.99183 0.90850 1.23096 1.03117 0.98403 1.00594 1.26902 1.01861 0.99833 0.84573 1.84787 1.52562 1.37915 1.23075 1.73862 1.11793 1.00303 1.24996 1.21724 0.79806 0.99961 0.99372 0.91311 0.87089 0.87138 0.89718 0.89013 0.92622 0.87860 0.90110 0.89472 0.93525 0.88331 0.84713 0.93415 0.86426 0.78772 0.72542 0.91855 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.11 13.97 21.65 0.30 -55.80 16 2 C 0.05 2.80 5.50 84.86 0.47 3.27 16 3 Si 0.91 45.88 27.74 68.60 1.90 47.78 16 4 H -0.26 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.24 -12.14 6.74 99.48 0.67 -11.47 16 7 C -0.53 -31.15 10.04 67.95 0.68 -30.47 16 8 H 0.06 3.95 8.03 -2.91 -0.02 3.92 16 9 S -0.18 -9.42 18.55 -56.49 -1.05 -10.47 16 10 C -0.10 -4.12 4.50 71.23 0.32 -3.80 16 11 C 0.53 19.91 7.72 87.66 0.68 20.58 16 12 O -0.57 -26.07 15.28 -3.05 -0.05 -26.12 16 13 N -0.60 -16.17 2.97 -819.01 -2.43 -18.60 16 14 C 0.09 1.77 6.34 86.36 0.55 2.32 16 15 C -0.13 -1.80 6.08 30.67 0.19 -1.61 16 16 C -0.11 -1.18 5.17 30.62 0.16 -1.02 16 17 C -0.09 -1.51 2.54 -10.73 -0.03 -1.54 16 18 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 19 C 0.07 0.95 5.15 86.30 0.44 1.40 16 20 N -0.70 -12.54 6.49 -517.93 -3.36 -15.90 16 21 C 0.14 2.13 6.27 85.56 0.54 2.67 16 22 C 0.00 0.04 6.84 43.58 0.30 0.34 16 23 C -0.23 -3.17 11.12 22.40 0.25 -2.92 16 24 C -0.05 -0.61 12.30 67.18 0.83 0.21 16 25 O 0.08 1.65 11.20 71.69 0.80 2.46 16 26 N -0.40 -9.70 12.07 -49.56 -0.60 -10.29 16 27 C 0.11 2.60 5.35 86.34 0.46 3.06 16 28 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 29 H 0.11 4.06 7.94 -2.40 -0.02 4.04 16 30 H 0.11 4.07 7.69 -2.39 -0.02 4.05 16 31 H 0.08 1.70 5.93 -2.39 -0.01 1.69 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.34 7.59 7.11 -89.69 -0.64 6.95 16 40 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.20 1.56 8.06 -2.91 -0.02 1.54 16 43 H 0.26 0.42 8.06 -2.91 -0.02 0.40 16 44 H 0.06 1.87 5.81 -2.39 -0.01 1.85 16 45 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -81.06 380.64 1.67 -79.39 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.33 Total: 15.07 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 5.83 Total: -7.52 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -6.09 Total: -100.59 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: 0.76 Total: -23.66 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.90 Total: 47.78 kcal Atomic # 16 Polarization: -9.42 SS G_CDS: -1.05 Total: -10.47 kcal Total: -81.06 1.67 -79.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714058604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.341 kcal (2) G-P(sol) polarization free energy of solvation -81.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds