Wall clock time and date at job start Tue Mar 31 2020 23:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32770 * 124.71174 * 2 1 4 4 C 1.44425 * 113.08301 * 180.26974 * 3 2 1 5 5 C 1.47190 * 123.45947 * 179.72701 * 4 3 2 6 6 O 1.21640 * 119.99784 * 180.02562 * 5 4 3 7 7 N 1.34775 * 120.00165 * 0.02682 * 5 4 3 8 8 C 1.46497 * 119.99757 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46602 * 180.02562 * 8 7 5 10 10 N 1.46904 * 109.46832 * 180.02562 * 9 8 7 11 11 C 1.46897 * 111.00108 * 66.04568 * 10 9 8 12 12 C 1.46899 * 111.00035 * 189.99795 * 10 9 8 13 13 C 1.50696 * 109.47384 * 169.99732 * 12 10 9 14 14 O 1.21290 * 119.99881 * 0.02562 * 13 12 10 15 15 N 1.34781 * 120.00119 * 180.02562 * 13 12 10 16 16 C 1.37097 * 120.00077 * 179.97438 * 15 13 12 17 17 H 1.08004 * 119.99530 * 0.02562 * 16 15 13 18 18 C 1.38945 * 120.00361 * 179.97438 * 16 15 13 19 19 N 1.31414 * 119.99573 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00246 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46937 * 60.00360 * 20 18 16 22 22 H 1.48502 * 109.46948 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46963 * 300.00155 * 20 18 16 24 24 C 1.36011 * 113.07836 * 359.50680 * 4 3 2 25 25 C 1.50701 * 124.59501 * 180.20062 * 24 4 3 26 26 S 1.70453 * 110.81620 * 0.47711 * 24 4 3 27 27 H 1.08994 * 109.47037 * 90.00316 * 1 2 3 28 28 H 1.09003 * 109.46455 * 210.00065 * 1 2 3 29 29 H 1.08999 * 109.47053 * 329.99575 * 1 2 3 30 30 H 1.08002 * 123.45547 * 359.97438 * 3 2 1 31 31 H 0.97002 * 119.99392 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47257 * 299.99802 * 8 7 5 33 33 H 1.08999 * 109.46890 * 60.00858 * 8 7 5 34 34 H 1.09001 * 109.47468 * 299.99716 * 9 8 7 35 35 H 1.08994 * 109.47639 * 60.00445 * 9 8 7 36 36 H 1.08998 * 109.47222 * 60.00179 * 11 10 9 37 37 H 1.09010 * 109.46904 * 180.02562 * 11 10 9 38 38 H 1.09001 * 109.46843 * 299.99659 * 11 10 9 39 39 H 1.09001 * 109.47612 * 290.00161 * 12 10 9 40 40 H 1.09009 * 109.47189 * 49.99572 * 12 10 9 41 41 H 0.96991 * 119.99931 * 359.97438 * 15 13 12 42 42 H 0.97003 * 119.99827 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.47114 * 180.34080 * 25 24 4 44 44 H 1.08998 * 109.46634 * 300.34064 * 25 24 4 45 45 H 1.08998 * 109.47062 * 60.33564 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8003 -0.0063 5 6 4.7201 1.8395 -0.0134 6 8 5.8945 1.5228 -0.0189 7 7 4.3733 3.1419 -0.0137 8 6 5.4108 4.1761 -0.0202 9 6 4.7535 5.5577 -0.0186 10 7 5.7939 6.5948 -0.0257 11 6 6.5530 6.5704 -1.2831 12 6 5.2145 7.9234 0.2137 13 6 6.3211 8.9200 0.4436 14 8 7.4787 8.5593 0.4108 15 7 6.0246 10.2124 0.6857 16 6 7.0314 11.1190 0.8955 17 1 8.0621 10.7977 0.8663 18 6 6.7258 12.4513 1.1445 19 7 5.4717 12.8423 1.1796 20 14 8.0976 13.6868 1.4296 21 1 8.9745 13.7377 0.2323 22 1 7.5119 15.0297 1.6722 23 1 8.8969 13.2750 2.6115 24 6 3.9477 -0.5327 -0.0001 25 6 5.3335 -1.1250 -0.0001 26 16 2.5065 -1.4427 -0.0001 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 1.8615 2.0940 -0.0004 31 1 3.4367 3.3943 -0.0097 32 1 6.0351 4.0701 0.8670 33 1 6.0266 4.0674 -0.9130 34 1 4.1290 5.6641 -0.9056 35 1 4.1380 5.6663 0.8743 36 1 5.8768 6.7480 -2.1193 37 1 7.3168 7.3479 -1.2616 38 1 7.0291 5.5970 -1.4012 39 1 4.6278 8.2256 -0.6538 40 1 4.5707 7.8860 1.0925 41 1 5.0990 10.5009 0.7116 42 1 5.2583 13.7724 1.3538 43 1 5.2636 -2.2128 -0.0006 44 1 5.8696 -0.7950 -0.8899 45 1 5.8694 -0.7957 0.8900 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714552037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:52 Heat of formation + Delta-G solvation = -41.612055 kcal Electronic energy + Delta-G solvation = -25790.570063 eV Core-core repulsion = 21934.608714 eV Total energy + Delta-G solvation = -3855.961349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16989 -38.68424 -37.56304 -36.71548 -34.73898 -33.80974 -33.34527 -31.25218 -30.26890 -29.15638 -27.70450 -26.00921 -25.16839 -24.29233 -23.12654 -21.28968 -20.99403 -19.36466 -19.15819 -17.85225 -17.54946 -16.93992 -16.19034 -15.93237 -15.76058 -15.16309 -14.90705 -14.65053 -14.48332 -14.29108 -13.96843 -13.87597 -13.62265 -13.53691 -13.40849 -13.32701 -13.23397 -12.92373 -12.36242 -12.12483 -11.98144 -11.93485 -11.82052 -11.51652 -11.39333 -11.32221 -11.26668 -11.03734 -10.91990 -10.43515 -10.21034 -10.02260 -9.46563 -9.23156 -9.00735 -8.73655 -8.47588 -7.98547 -7.88581 -6.41351 -3.82067 0.45066 1.06777 1.49204 1.61743 3.00189 3.17021 3.20712 3.26293 3.31024 3.90472 4.06597 4.21017 4.28851 4.48031 4.65538 4.80849 4.85461 4.94224 5.01632 5.05464 5.13142 5.19090 5.25056 5.39041 5.39380 5.40095 5.57519 5.62141 5.64276 5.69840 5.84239 5.86825 5.91554 5.93319 5.95226 6.02365 6.25858 6.29429 6.56442 7.19780 7.31047 7.35644 7.55635 8.06577 8.07037 8.62259 9.18572 9.54609 10.06637 10.76329 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027874 B = 0.001649 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.273262 B =16977.286263 C =17740.997293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.203 4.203 3 C -0.110 4.110 4 C -0.173 4.173 5 C 0.578 3.422 6 O -0.534 6.534 7 N -0.723 5.723 8 C 0.123 3.877 9 C 0.044 3.956 10 N -0.515 5.515 11 C 0.018 3.982 12 C 0.047 3.953 13 C 0.444 3.556 14 O -0.576 6.576 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.903 5.903 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.141 4.141 25 C -0.080 4.080 26 S 0.178 5.822 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.147 0.853 31 H 0.398 0.602 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.015 0.985 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.089 0.911 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.860 -27.022 -3.771 30.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.319 4.319 3 C -0.139 4.139 4 C -0.189 4.189 5 C 0.364 3.636 6 O -0.413 6.413 7 N -0.375 5.375 8 C 0.000 4.000 9 C -0.085 4.085 10 N -0.239 5.239 11 C -0.130 4.130 12 C -0.084 4.084 13 C 0.229 3.771 14 O -0.460 6.460 15 N -0.201 5.201 16 C -0.428 4.428 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.261 4.261 25 C -0.138 4.138 26 S 0.444 5.556 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.164 0.836 31 H 0.232 0.768 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.034 0.966 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.106 0.894 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.292 -28.896 -3.377 31.582 hybrid contribution -0.779 2.852 -0.468 2.994 sum -13.071 -26.043 -3.845 29.392 Atomic orbital electron populations 1.20351 0.87397 1.03394 1.02949 1.24276 1.00412 0.96091 1.11156 1.21098 0.90957 0.99371 1.02495 1.20095 0.93344 0.92973 1.12486 1.17505 0.87789 0.81884 0.76400 1.90799 1.18668 1.81978 1.49824 1.45773 1.10446 1.05607 1.75714 1.21345 0.90005 0.85134 1.03565 1.22253 0.93784 0.91235 1.01181 1.61440 1.23632 1.02816 1.36002 1.22631 0.98746 1.03855 0.87743 1.21869 0.96436 0.88906 1.01213 1.19704 0.89753 0.83111 0.84547 1.90493 1.20741 1.78647 1.56121 1.41852 1.09769 1.06199 1.62266 1.19654 0.89924 0.88008 1.45246 0.87940 1.25258 0.97297 0.97999 0.97399 1.69606 1.17079 1.18108 1.49611 0.85914 0.80315 0.78857 0.79111 1.19928 1.21005 1.19885 1.24513 1.01889 0.96701 1.03014 1.20425 0.89540 0.98935 1.04901 1.83052 0.93258 1.08407 1.70866 0.90622 0.91215 0.90312 0.83577 0.76794 0.90134 0.91065 0.94583 0.90282 0.96632 0.88359 0.91830 0.93358 0.89324 0.77510 0.91848 0.91871 0.89423 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.35 36.01 0.37 0.02 16 2 C -0.20 -1.39 6.44 -36.18 -0.23 -1.63 16 3 C -0.11 -0.86 9.75 -39.02 -0.38 -1.24 16 4 C -0.17 -1.77 5.98 -104.63 -0.63 -2.39 16 5 C 0.58 7.16 7.79 -12.63 -0.10 7.06 16 6 O -0.53 -8.33 14.64 5.24 0.08 -8.26 16 7 N -0.72 -7.54 5.53 -61.46 -0.34 -7.88 16 8 C 0.12 1.52 5.60 -4.04 -0.02 1.50 16 9 C 0.04 0.54 5.07 -3.82 -0.02 0.52 16 10 N -0.51 -8.47 4.50 -244.37 -1.10 -9.57 16 11 C 0.02 0.29 8.96 60.06 0.54 0.83 16 12 C 0.05 0.82 5.45 -4.98 -0.03 0.80 16 13 C 0.44 10.41 7.48 -10.99 -0.08 10.32 16 14 O -0.58 -15.49 13.91 5.55 0.08 -15.41 16 15 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 16 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 17 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 20 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 C -0.14 -1.34 6.34 -35.11 -0.22 -1.56 16 25 C -0.08 -0.71 8.77 36.01 0.32 -0.40 16 26 S 0.18 1.25 22.93 -107.50 -2.46 -1.22 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.15 0.80 7.10 -52.49 -0.37 0.43 16 31 H 0.40 3.00 7.02 -40.82 -0.29 2.71 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.95 6.55 -51.93 -0.34 0.61 16 34 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 35 H 0.08 0.86 7.93 -51.93 -0.41 0.45 16 36 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.10 1.96 5.82 -51.92 -0.30 1.65 16 38 H 0.06 0.94 6.47 -51.93 -0.34 0.61 16 39 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 40 H 0.09 1.38 7.93 -51.92 -0.41 0.97 16 41 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 44 H 0.09 0.87 7.76 -51.93 -0.40 0.46 16 45 H 0.09 0.88 7.80 -51.93 -0.41 0.47 16 LS Contribution 386.70 15.07 5.83 5.83 Total: -1.00 -33.46 386.70 -9.49 -42.95 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.48 Total: 9.64 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -0.73 Total: 5.87 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.77 Total: -55.45 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: 0.15 Total: -23.67 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.46 Total: -1.22 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.46 -9.49 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714552037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.336 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds