Wall clock time and date at job start Tue Mar 31 2020 23:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32770 * 124.71174 * 2 1 4 4 C 1.44425 * 113.08301 * 180.26974 * 3 2 1 5 5 C 1.47190 * 123.45947 * 179.72701 * 4 3 2 6 6 O 1.21640 * 119.99784 * 180.02562 * 5 4 3 7 7 N 1.34775 * 120.00165 * 0.02682 * 5 4 3 8 8 C 1.46497 * 119.99757 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46602 * 180.02562 * 8 7 5 10 10 N 1.46904 * 109.46832 * 180.02562 * 9 8 7 11 11 C 1.46897 * 111.00108 * 66.04568 * 10 9 8 12 12 C 1.46899 * 111.00035 * 189.99795 * 10 9 8 13 13 C 1.50696 * 109.47384 * 169.99732 * 12 10 9 14 14 O 1.21290 * 119.99881 * 0.02562 * 13 12 10 15 15 N 1.34781 * 120.00119 * 180.02562 * 13 12 10 16 16 C 1.37097 * 120.00077 * 179.97438 * 15 13 12 17 17 H 1.08004 * 119.99530 * 0.02562 * 16 15 13 18 18 C 1.38945 * 120.00361 * 179.97438 * 16 15 13 19 19 N 1.31414 * 119.99573 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00246 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46937 * 60.00360 * 20 18 16 22 22 H 1.48502 * 109.46948 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46963 * 300.00155 * 20 18 16 24 24 C 1.36011 * 113.07836 * 359.50680 * 4 3 2 25 25 C 1.50701 * 124.59501 * 180.20062 * 24 4 3 26 26 S 1.70453 * 110.81620 * 0.47711 * 24 4 3 27 27 H 1.08994 * 109.47037 * 90.00316 * 1 2 3 28 28 H 1.09003 * 109.46455 * 210.00065 * 1 2 3 29 29 H 1.08999 * 109.47053 * 329.99575 * 1 2 3 30 30 H 1.08002 * 123.45547 * 359.97438 * 3 2 1 31 31 H 0.97002 * 119.99392 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47257 * 299.99802 * 8 7 5 33 33 H 1.08999 * 109.46890 * 60.00858 * 8 7 5 34 34 H 1.09001 * 109.47468 * 299.99716 * 9 8 7 35 35 H 1.08994 * 109.47639 * 60.00445 * 9 8 7 36 36 H 1.08998 * 109.47222 * 60.00179 * 11 10 9 37 37 H 1.09010 * 109.46904 * 180.02562 * 11 10 9 38 38 H 1.09001 * 109.46843 * 299.99659 * 11 10 9 39 39 H 1.09001 * 109.47612 * 290.00161 * 12 10 9 40 40 H 1.09009 * 109.47189 * 49.99572 * 12 10 9 41 41 H 0.96991 * 119.99931 * 359.97438 * 15 13 12 42 42 H 0.97003 * 119.99827 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.47114 * 180.34080 * 25 24 4 44 44 H 1.08998 * 109.46634 * 300.34064 * 25 24 4 45 45 H 1.08998 * 109.47062 * 60.33564 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8003 -0.0063 5 6 4.7201 1.8395 -0.0134 6 8 5.8945 1.5228 -0.0189 7 7 4.3733 3.1419 -0.0137 8 6 5.4108 4.1761 -0.0202 9 6 4.7535 5.5577 -0.0186 10 7 5.7939 6.5948 -0.0257 11 6 6.5530 6.5704 -1.2831 12 6 5.2145 7.9234 0.2137 13 6 6.3211 8.9200 0.4436 14 8 7.4787 8.5593 0.4108 15 7 6.0246 10.2124 0.6857 16 6 7.0314 11.1190 0.8955 17 1 8.0621 10.7977 0.8663 18 6 6.7258 12.4513 1.1445 19 7 5.4717 12.8423 1.1796 20 14 8.0976 13.6868 1.4296 21 1 8.9745 13.7377 0.2323 22 1 7.5119 15.0297 1.6722 23 1 8.8969 13.2750 2.6115 24 6 3.9477 -0.5327 -0.0001 25 6 5.3335 -1.1250 -0.0001 26 16 2.5065 -1.4427 -0.0001 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 1.8615 2.0940 -0.0004 31 1 3.4367 3.3943 -0.0097 32 1 6.0351 4.0701 0.8670 33 1 6.0266 4.0674 -0.9130 34 1 4.1290 5.6641 -0.9056 35 1 4.1380 5.6663 0.8743 36 1 5.8768 6.7480 -2.1193 37 1 7.3168 7.3479 -1.2616 38 1 7.0291 5.5970 -1.4012 39 1 4.6278 8.2256 -0.6538 40 1 4.5707 7.8860 1.0925 41 1 5.0990 10.5009 0.7116 42 1 5.2583 13.7724 1.3538 43 1 5.2636 -2.2128 -0.0006 44 1 5.8696 -0.7950 -0.8899 45 1 5.8694 -0.7957 0.8900 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714552037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:51 Heat of formation + Delta-G solvation = -66.109313 kcal Electronic energy + Delta-G solvation = -25791.632344 eV Core-core repulsion = 21934.608714 eV Total energy + Delta-G solvation = -3857.023630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.07062 -40.35640 -38.45936 -37.92089 -36.04518 -35.56107 -33.93888 -33.26756 -31.19387 -29.99174 -29.07122 -27.16519 -26.40447 -25.42861 -24.14068 -22.33511 -21.81533 -20.97424 -20.11004 -19.84337 -18.24476 -17.88063 -17.59073 -16.98433 -16.90480 -16.55270 -16.29688 -16.05389 -15.66408 -15.41155 -15.05961 -14.94207 -14.82662 -14.44053 -14.32049 -14.14119 -14.05341 -13.83910 -13.76823 -13.44255 -13.03416 -12.94448 -12.86286 -12.59815 -12.55873 -12.54576 -12.50557 -12.41026 -12.15986 -12.09177 -11.85169 -11.44685 -10.97765 -10.28543 -10.18982 -9.98487 -9.57033 -9.36439 -9.24306 -8.45218 -5.93430 -0.22634 0.49194 0.90654 0.96236 1.40241 1.42079 1.52661 2.05083 2.07652 2.31035 2.31619 2.92998 3.21785 3.43352 3.64611 3.77266 3.85334 4.04857 4.14620 4.23892 4.25803 4.36268 4.45569 4.53509 4.55058 4.62107 4.63058 4.63856 4.63885 4.81175 4.83145 4.89566 4.95084 5.07836 5.14447 5.18682 5.20800 5.34528 5.42209 5.42528 5.85409 6.05033 6.16231 6.51262 6.62914 7.14979 7.18894 7.58707 8.15250 8.71866 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027874 B = 0.001649 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.273262 B =16977.286263 C =17740.997293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.201 4.201 3 C -0.120 4.120 4 C -0.191 4.191 5 C 0.572 3.428 6 O -0.577 6.577 7 N -0.708 5.708 8 C 0.132 3.868 9 C 0.053 3.947 10 N -0.539 5.539 11 C 0.024 3.976 12 C 0.060 3.940 13 C 0.439 3.561 14 O -0.616 6.616 15 N -0.574 5.574 16 C -0.333 4.333 17 H 0.077 0.923 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.991 3.009 21 H -0.273 1.273 22 H -0.270 1.270 23 H -0.274 1.274 24 C -0.165 4.165 25 C -0.077 4.077 26 S 0.217 5.783 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.169 0.831 31 H 0.415 0.585 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.035 0.965 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.397 0.603 42 H 0.277 0.723 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.845 -27.647 -3.897 32.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.318 4.318 3 C -0.147 4.147 4 C -0.208 4.208 5 C 0.360 3.640 6 O -0.459 6.459 7 N -0.361 5.361 8 C 0.008 3.992 9 C -0.075 4.075 10 N -0.264 5.264 11 C -0.123 4.123 12 C -0.071 4.071 13 C 0.227 3.773 14 O -0.502 6.502 15 N -0.212 5.212 16 C -0.462 4.462 17 H 0.095 0.905 18 C -0.212 4.212 19 N -0.561 5.561 20 Si 0.815 3.185 21 H -0.198 1.198 22 H -0.194 1.194 23 H -0.199 1.199 24 C -0.286 4.286 25 C -0.135 4.135 26 S 0.483 5.517 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.186 0.814 31 H 0.252 0.748 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.133 0.867 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.090 0.910 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.346 -29.525 -3.507 33.459 hybrid contribution 0.112 2.917 -0.440 2.952 sum -15.235 -26.607 -3.947 30.913 Atomic orbital electron populations 1.20478 0.85285 1.04481 1.03947 1.24704 1.01802 0.95668 1.09662 1.21250 0.89580 1.00863 1.03039 1.20135 0.94074 0.92604 1.14006 1.17945 0.87774 0.82707 0.75600 1.90774 1.20541 1.82670 1.51905 1.45575 1.10973 1.04685 1.74879 1.21099 0.90270 0.86059 1.01822 1.22240 0.92788 0.89085 1.03339 1.61322 1.25584 1.03210 1.36285 1.22467 0.98334 1.02842 0.88704 1.21740 0.94155 0.87755 1.03406 1.20828 0.90821 0.83354 0.82325 1.90476 1.23158 1.79364 1.57216 1.41911 1.09443 1.06752 1.63051 1.19603 0.89684 0.89442 1.47489 0.90461 1.26000 0.99644 0.99033 0.96559 1.69661 1.18220 1.18760 1.49418 0.85015 0.77668 0.77026 0.78785 1.19803 1.19436 1.19890 1.24752 1.03124 0.97302 1.03403 1.20352 0.89494 1.00333 1.03336 1.82888 0.91474 1.07813 1.69482 0.89565 0.90267 0.89128 0.81378 0.74783 0.92590 0.92341 0.92001 0.88270 0.94615 0.92483 0.90940 0.90868 0.86685 0.76938 0.91329 0.89556 0.91012 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.35 71.24 0.74 0.31 16 2 C -0.20 -2.23 6.44 24.51 0.16 -2.07 16 3 C -0.12 -1.58 9.75 22.67 0.22 -1.36 16 4 C -0.19 -3.78 5.98 -19.87 -0.12 -3.90 16 5 C 0.57 14.22 7.79 86.60 0.67 14.90 16 6 O -0.58 -18.88 14.64 -4.16 -0.06 -18.94 16 7 N -0.71 -13.92 5.53 -466.60 -2.58 -16.50 16 8 C 0.13 3.16 5.60 86.38 0.48 3.65 16 9 C 0.05 1.15 5.07 86.30 0.44 1.59 16 10 N -0.54 -17.03 4.50 -927.04 -4.17 -21.20 16 11 C 0.02 0.79 8.96 127.69 1.14 1.94 16 12 C 0.06 2.00 5.45 85.56 0.47 2.47 16 13 C 0.44 20.79 7.48 87.66 0.66 21.44 16 14 O -0.62 -34.24 13.91 -3.06 -0.04 -34.28 16 15 N -0.57 -29.26 5.29 -306.99 -1.62 -30.88 16 16 C -0.33 -18.92 9.68 84.04 0.81 -18.10 16 17 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 18 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 19 N -0.92 -49.36 13.05 21.66 0.28 -49.08 16 20 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 C -0.17 -3.06 6.34 25.17 0.16 -2.90 16 25 C -0.08 -1.43 8.77 71.24 0.62 -0.80 16 26 S 0.22 2.62 22.93 -56.49 -1.30 1.32 16 27 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.17 1.31 7.10 -2.91 -0.02 1.28 16 31 H 0.41 5.18 7.02 -92.71 -0.65 4.53 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 1.56 6.55 -2.39 -0.02 1.54 16 34 H 0.06 1.07 8.12 -2.39 -0.02 1.06 16 35 H 0.10 1.78 7.93 -2.39 -0.02 1.76 16 36 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 2.34 5.82 -2.38 -0.01 2.32 16 38 H 0.07 2.16 6.47 -2.39 -0.02 2.15 16 39 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 40 H 0.12 3.24 7.93 -2.38 -0.02 3.22 16 41 H 0.40 19.02 7.90 -92.72 -0.73 18.29 16 42 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 43 H 0.09 1.10 8.12 -2.39 -0.02 1.08 16 44 H 0.07 1.53 7.76 -2.39 -0.02 1.51 16 45 H 0.07 1.53 7.80 -2.39 -0.02 1.51 16 Total: -1.00 -75.45 386.70 -0.89 -76.34 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: -0.35 Total: 31.11 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 6.92 Total: 16.94 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -8.09 Total: -117.67 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -0.10 Total: -53.22 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.30 Total: 1.32 kcal Total: -75.45 -0.89 -76.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714552037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.233 kcal (2) G-P(sol) polarization free energy of solvation -75.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds