Wall clock time and date at job start Tue Mar 31 2020 23:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.70445 * 124.59138 * 2 1 4 4 C 1.75503 * 92.44219 * 180.02562 * 3 2 1 5 5 C 1.32769 * 110.58034 * 359.73686 * 4 3 2 6 6 C 1.36010 * 124.59066 * 180.02562 * 2 1 3 7 7 C 1.47194 * 123.45895 * 359.97240 * 6 2 1 8 8 O 1.21633 * 120.00292 * 43.72252 * 7 6 2 9 9 N 1.34781 * 119.99725 * 223.71689 * 7 6 2 10 10 C 1.46494 * 120.00157 * 355.12291 * 9 7 6 11 11 C 1.46495 * 119.99642 * 175.11715 * 9 7 6 12 12 H 1.09003 * 109.47436 * 0.02562 * 11 9 7 13 13 C 1.53003 * 109.46947 * 120.00309 * 11 9 7 14 14 C 1.53004 * 109.47252 * 240.00265 * 11 9 7 15 15 N 1.46900 * 109.47165 * 55.00193 * 14 11 9 16 16 C 1.46894 * 111.00109 * 180.02562 * 15 14 11 17 17 C 1.50702 * 109.47388 * 179.97438 * 16 15 14 18 18 O 1.21297 * 119.99545 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00076 * 179.97438 * 17 16 15 20 20 C 1.37092 * 119.99815 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00295 * 0.02562 * 20 19 17 22 22 C 1.38957 * 120.00172 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99857 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00185 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47127 * 89.99889 * 24 22 20 26 26 H 1.48498 * 109.47271 * 210.00264 * 24 22 20 27 27 H 1.48506 * 109.47201 * 330.00098 * 24 22 20 28 28 H 1.09006 * 109.47082 * 269.99750 * 1 2 3 29 29 H 1.09000 * 109.47414 * 30.00062 * 1 2 3 30 30 H 1.08999 * 109.47420 * 150.00318 * 1 2 3 31 31 H 1.08009 * 124.70780 * 179.97438 * 4 3 2 32 32 H 1.07995 * 123.46364 * 180.23017 * 5 4 3 33 33 H 1.09001 * 109.46903 * 274.90779 * 10 9 7 34 34 H 1.08999 * 109.47523 * 34.90553 * 10 9 7 35 35 H 1.08994 * 109.47089 * 154.90971 * 10 9 7 36 36 H 1.08996 * 109.47243 * 299.99820 * 13 11 9 37 37 H 1.08994 * 109.47188 * 59.99924 * 13 11 9 38 38 H 1.09007 * 109.47122 * 179.97438 * 13 11 9 39 39 H 1.09001 * 109.46563 * 295.00219 * 14 11 9 40 40 H 1.09002 * 109.47251 * 174.99979 * 14 11 9 41 41 H 1.00899 * 110.99732 * 303.95487 * 15 14 11 42 42 H 1.09009 * 109.46676 * 299.99894 * 16 15 14 43 43 H 1.09002 * 109.47375 * 59.99735 * 16 15 14 44 44 H 0.97003 * 119.99964 * 359.97438 * 19 17 16 45 45 H 0.96994 * 120.00035 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9606 0.4692 -0.0008 5 6 3.6943 -0.8315 0.0047 6 6 2.2792 -1.1197 -0.0005 7 6 1.7289 -2.4849 -0.0005 8 8 0.7952 -2.7644 -0.7282 9 7 2.2599 -3.4254 0.8058 10 6 3.4506 -3.1198 1.6026 11 6 1.6461 -4.7532 0.8854 12 1 0.7781 -4.7924 0.2272 13 6 2.6624 -5.8116 0.4521 14 6 1.2074 -5.0268 2.3255 15 7 0.3246 -3.9451 2.7823 16 6 -0.1169 -4.1743 4.1645 17 6 -1.0180 -3.0466 4.5975 18 8 -1.2682 -2.1414 3.8299 19 7 -1.5467 -3.0446 5.8372 20 6 -2.3669 -2.0190 6.2309 21 1 -2.5897 -1.2129 5.5475 22 6 -2.9124 -2.0171 7.5089 23 7 -2.6418 -2.9982 8.3403 24 14 -4.0305 -0.6201 8.0451 25 1 -5.4382 -0.9577 7.7137 26 1 -3.9018 -0.4177 9.5105 27 1 -3.6405 0.6257 7.3371 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 4.9538 0.8937 -0.0014 32 1 4.4575 -1.5955 0.0089 33 1 4.3434 -3.2842 0.9993 34 1 3.4157 -2.0788 1.9237 35 1 3.4787 -3.7692 2.4776 36 1 2.9749 -5.6168 -0.5738 37 1 3.5305 -5.7726 1.1099 38 1 2.2059 -6.7997 0.5118 39 1 2.0854 -5.0758 2.9696 40 1 0.6719 -5.9752 2.3683 41 1 0.7760 -3.0473 2.6914 42 1 -0.6614 -5.1170 4.2203 43 1 0.7520 -4.2171 4.8212 44 1 -1.3475 -3.7692 6.4506 45 1 -3.0223 -2.9967 9.2325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715326234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:07 Heat of formation + Delta-G solvation = -33.912577 kcal Electronic energy + Delta-G solvation = -27601.613355 eV Core-core repulsion = 23745.985881 eV Total energy + Delta-G solvation = -3855.627474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.36051 -38.31161 -37.45157 -36.52772 -34.58665 -33.74726 -32.02619 -31.72793 -31.16986 -27.56685 -27.40012 -26.85268 -25.00153 -24.01362 -23.14518 -21.83769 -20.17970 -19.19734 -18.80534 -17.86846 -17.33697 -16.67393 -16.40928 -16.21137 -15.55778 -15.03630 -14.75415 -14.47785 -14.33787 -13.88927 -13.88137 -13.71164 -13.49759 -13.37934 -13.09736 -12.89068 -12.69697 -12.56741 -12.40807 -12.22902 -11.92519 -11.83050 -11.64438 -11.59169 -11.56794 -11.37940 -11.11339 -11.05368 -10.90942 -10.38648 -10.20546 -9.72822 -9.49239 -8.86613 -8.75890 -8.50396 -8.38288 -8.00823 -7.93436 -6.40406 -3.80933 0.81079 1.41779 1.80340 1.99862 2.92257 3.18793 3.19662 3.27162 3.32980 3.93007 4.09442 4.30583 4.56008 4.67961 4.88503 4.95414 4.98950 5.05066 5.15147 5.18789 5.24380 5.27280 5.33363 5.43257 5.47906 5.53466 5.55658 5.69575 5.76215 5.80038 5.84053 5.90460 5.90901 5.99878 6.09766 6.18839 6.28551 6.33490 6.54060 7.24779 7.34116 7.56465 7.69418 8.08010 8.22375 8.63292 9.19586 9.56119 10.08002 10.77495 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.003235 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.436742 B = 8654.335036 C =10478.070382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.134 4.134 3 S 0.173 5.827 4 C -0.242 4.242 5 C -0.105 4.105 6 C -0.175 4.175 7 C 0.591 3.409 8 O -0.526 6.526 9 N -0.605 5.605 10 C 0.074 3.926 11 C 0.138 3.862 12 H 0.111 0.889 13 C -0.158 4.158 14 C 0.049 3.951 15 N -0.664 5.664 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.580 6.580 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.166 0.834 32 H 0.148 0.852 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.028 0.972 40 H 0.083 0.917 41 H 0.348 0.652 42 H 0.086 0.914 43 H 0.040 0.960 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.108 -0.127 -14.091 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.254 4.254 3 S 0.438 5.562 4 C -0.376 4.376 5 C -0.134 4.134 6 C -0.192 4.192 7 C 0.378 3.622 8 O -0.403 6.403 9 N -0.339 5.339 10 C -0.070 4.070 11 C 0.035 3.965 12 H 0.129 0.871 13 C -0.216 4.216 14 C -0.081 4.081 15 N -0.296 5.296 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.464 6.464 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.184 0.816 32 H 0.165 0.835 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.046 0.954 40 H 0.101 0.899 41 H 0.168 0.832 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.515 1.583 -15.067 21.685 hybrid contribution 0.906 -1.218 1.495 2.131 sum 16.421 0.364 -13.572 21.306 Atomic orbital electron populations 1.20652 0.86556 1.04377 1.04534 1.24486 1.01910 0.96576 1.02469 1.83086 0.94928 1.07619 1.70539 1.25361 1.02268 0.97250 1.12756 1.21257 0.94352 0.96230 1.01602 1.20031 0.92864 0.93652 1.12612 1.17561 0.81855 0.83461 0.79321 1.90761 1.28350 1.80833 1.40332 1.47695 1.29425 1.12753 1.44006 1.21944 0.87008 1.02489 0.95518 1.21185 0.96900 0.80947 0.97494 0.87101 1.22094 0.99152 0.98679 1.01696 1.22350 0.94892 0.96372 0.94534 1.59999 1.43132 1.05150 1.21363 1.21683 0.98090 0.99454 0.88988 1.19810 0.85654 0.88562 0.83331 1.90524 1.64118 1.38708 1.53083 1.41854 1.42997 1.23492 1.11782 1.19697 1.22856 1.02244 0.97962 0.87974 1.25249 0.98567 0.98318 0.95802 1.69610 1.45205 1.31979 1.07633 0.85867 0.80012 0.80931 0.77542 1.20383 1.20953 1.19439 0.89169 0.91213 0.88312 0.81636 0.83478 0.92616 0.90557 0.91034 0.92099 0.92437 0.91172 0.95383 0.89862 0.83185 0.89586 0.94165 0.77512 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 10.02 36.01 0.36 -1.11 16 2 C -0.13 -1.81 6.33 -35.11 -0.22 -2.03 16 3 S 0.17 1.78 22.97 -107.50 -2.47 -0.69 16 4 C -0.24 -2.17 11.12 28.86 0.32 -1.85 16 5 C -0.10 -1.05 8.17 -39.02 -0.32 -1.37 16 6 C -0.18 -2.34 5.08 -104.63 -0.53 -2.87 16 7 C 0.59 8.87 7.17 -12.62 -0.09 8.78 16 8 O -0.53 -9.65 14.54 5.25 0.08 -9.57 16 9 N -0.61 -7.39 1.83 -175.29 -0.32 -7.71 16 10 C 0.07 0.67 8.08 59.84 0.48 1.15 16 11 C 0.14 1.65 2.94 -67.93 -0.20 1.45 16 12 H 0.11 1.63 6.91 -51.93 -0.36 1.27 16 13 C -0.16 -1.36 9.19 37.16 0.34 -1.02 16 14 C 0.05 0.61 5.00 -3.82 -0.02 0.59 16 15 N -0.66 -11.36 6.12 -115.05 -0.70 -12.06 16 16 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 17 C 0.44 10.64 7.82 -10.99 -0.09 10.55 16 18 O -0.58 -16.07 15.78 5.54 0.09 -15.99 16 19 N -0.56 -14.48 5.29 -10.96 -0.06 -14.54 16 20 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 21 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.71 13.05 55.50 0.72 -23.98 16 24 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 1.61 6.19 -51.93 -0.32 1.29 16 31 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.15 1.13 6.35 -52.49 -0.33 0.80 16 33 H 0.06 0.38 7.16 -51.93 -0.37 0.01 16 34 H 0.08 0.74 6.05 -51.93 -0.31 0.43 16 35 H 0.07 0.60 6.53 -51.93 -0.34 0.26 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.03 0.31 6.86 -51.93 -0.36 -0.05 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.35 6.39 7.56 -39.29 -0.30 6.09 16 42 H 0.09 1.44 8.14 -51.92 -0.42 1.02 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 LS Contribution 382.41 15.07 5.76 5.76 Total: -1.00 -33.80 382.41 -8.46 -42.26 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -6.31 Total: 15.20 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -0.23 Total: 5.12 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.36 Total: -58.30 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: 0.16 Total: -25.56 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.47 Total: -0.69 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.80 -8.46 -42.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715326234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.347 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds