Wall clock time and date at job start Tue Mar 31 2020 23:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.70445 * 124.59138 * 2 1 4 4 C 1.75503 * 92.44219 * 180.02562 * 3 2 1 5 5 C 1.32769 * 110.58034 * 359.73686 * 4 3 2 6 6 C 1.36010 * 124.59066 * 180.02562 * 2 1 3 7 7 C 1.47194 * 123.45895 * 359.97240 * 6 2 1 8 8 O 1.21633 * 120.00292 * 43.72252 * 7 6 2 9 9 N 1.34781 * 119.99725 * 223.71689 * 7 6 2 10 10 C 1.46494 * 120.00157 * 355.12291 * 9 7 6 11 11 C 1.46495 * 119.99642 * 175.11715 * 9 7 6 12 12 H 1.09003 * 109.47436 * 0.02562 * 11 9 7 13 13 C 1.53003 * 109.46947 * 120.00309 * 11 9 7 14 14 C 1.53004 * 109.47252 * 240.00265 * 11 9 7 15 15 N 1.46900 * 109.47165 * 55.00193 * 14 11 9 16 16 C 1.46894 * 111.00109 * 180.02562 * 15 14 11 17 17 C 1.50702 * 109.47388 * 179.97438 * 16 15 14 18 18 O 1.21297 * 119.99545 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00076 * 179.97438 * 17 16 15 20 20 C 1.37092 * 119.99815 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00295 * 0.02562 * 20 19 17 22 22 C 1.38957 * 120.00172 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99857 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00185 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47127 * 89.99889 * 24 22 20 26 26 H 1.48498 * 109.47271 * 210.00264 * 24 22 20 27 27 H 1.48506 * 109.47201 * 330.00098 * 24 22 20 28 28 H 1.09006 * 109.47082 * 269.99750 * 1 2 3 29 29 H 1.09000 * 109.47414 * 30.00062 * 1 2 3 30 30 H 1.08999 * 109.47420 * 150.00318 * 1 2 3 31 31 H 1.08009 * 124.70780 * 179.97438 * 4 3 2 32 32 H 1.07995 * 123.46364 * 180.23017 * 5 4 3 33 33 H 1.09001 * 109.46903 * 274.90779 * 10 9 7 34 34 H 1.08999 * 109.47523 * 34.90553 * 10 9 7 35 35 H 1.08994 * 109.47089 * 154.90971 * 10 9 7 36 36 H 1.08996 * 109.47243 * 299.99820 * 13 11 9 37 37 H 1.08994 * 109.47188 * 59.99924 * 13 11 9 38 38 H 1.09007 * 109.47122 * 179.97438 * 13 11 9 39 39 H 1.09001 * 109.46563 * 295.00219 * 14 11 9 40 40 H 1.09002 * 109.47251 * 174.99979 * 14 11 9 41 41 H 1.00899 * 110.99732 * 303.95487 * 15 14 11 42 42 H 1.09009 * 109.46676 * 299.99894 * 16 15 14 43 43 H 1.09002 * 109.47375 * 59.99735 * 16 15 14 44 44 H 0.97003 * 119.99964 * 359.97438 * 19 17 16 45 45 H 0.96994 * 120.00035 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9606 0.4692 -0.0008 5 6 3.6943 -0.8315 0.0047 6 6 2.2792 -1.1197 -0.0005 7 6 1.7289 -2.4849 -0.0005 8 8 0.7952 -2.7644 -0.7282 9 7 2.2599 -3.4254 0.8058 10 6 3.4506 -3.1198 1.6026 11 6 1.6461 -4.7532 0.8854 12 1 0.7781 -4.7924 0.2272 13 6 2.6624 -5.8116 0.4521 14 6 1.2074 -5.0268 2.3255 15 7 0.3246 -3.9451 2.7823 16 6 -0.1169 -4.1743 4.1645 17 6 -1.0180 -3.0466 4.5975 18 8 -1.2682 -2.1414 3.8299 19 7 -1.5467 -3.0446 5.8372 20 6 -2.3669 -2.0190 6.2309 21 1 -2.5897 -1.2129 5.5475 22 6 -2.9124 -2.0171 7.5089 23 7 -2.6418 -2.9982 8.3403 24 14 -4.0305 -0.6201 8.0451 25 1 -5.4382 -0.9577 7.7137 26 1 -3.9018 -0.4177 9.5105 27 1 -3.6405 0.6257 7.3371 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 4.9538 0.8937 -0.0014 32 1 4.4575 -1.5955 0.0089 33 1 4.3434 -3.2842 0.9993 34 1 3.4157 -2.0788 1.9237 35 1 3.4787 -3.7692 2.4776 36 1 2.9749 -5.6168 -0.5738 37 1 3.5305 -5.7726 1.1099 38 1 2.2059 -6.7997 0.5118 39 1 2.0854 -5.0758 2.9696 40 1 0.6719 -5.9752 2.3683 41 1 0.7760 -3.0473 2.6914 42 1 -0.6614 -5.1170 4.2203 43 1 0.7520 -4.2171 4.8212 44 1 -1.3475 -3.7692 6.4506 45 1 -3.0223 -2.9967 9.2325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715326234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:06 Heat of formation + Delta-G solvation = -58.034610 kcal Electronic energy + Delta-G solvation = -27602.659365 eV Core-core repulsion = 23745.985881 eV Total energy + Delta-G solvation = -3856.673484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.38632 -40.15481 -38.48461 -37.63013 -36.16038 -35.49470 -33.30453 -32.99708 -32.64418 -28.99053 -28.34478 -27.69553 -26.69192 -25.10831 -24.48175 -22.71006 -21.28294 -20.90036 -19.92761 -19.77080 -18.26128 -17.95651 -17.64493 -17.22048 -17.09028 -16.43455 -16.19841 -15.94639 -15.61974 -15.36524 -15.11827 -14.84379 -14.70011 -14.39985 -14.21103 -14.06053 -13.86675 -13.55502 -13.47731 -13.44039 -13.18050 -13.06419 -12.98031 -12.85073 -12.75122 -12.62070 -12.47080 -12.40484 -12.13031 -11.92909 -11.86125 -11.52773 -10.84244 -10.38919 -10.03106 -9.78901 -9.65013 -9.35519 -9.27400 -8.48305 -5.96933 -0.11793 0.56374 0.97747 1.14805 1.36302 1.40115 1.52768 1.92972 2.03168 2.22439 2.27970 2.89729 3.18840 3.46740 3.66519 3.72927 3.94933 4.14676 4.16728 4.20595 4.23517 4.33409 4.39860 4.46280 4.51905 4.54778 4.56283 4.67371 4.70020 4.72207 4.82587 4.88241 4.95956 5.03897 5.11486 5.16686 5.28437 5.34311 5.39105 5.62641 5.87540 6.09687 6.30335 6.37883 6.58878 7.11173 7.16110 7.54138 8.10313 8.69155 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.003235 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.436742 B = 8654.335036 C =10478.070382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.177 4.177 3 S 0.200 5.800 4 C -0.224 4.224 5 C -0.110 4.110 6 C -0.185 4.185 7 C 0.579 3.421 8 O -0.577 6.577 9 N -0.600 5.600 10 C 0.067 3.933 11 C 0.137 3.863 12 H 0.074 0.926 13 C -0.146 4.146 14 C 0.052 3.948 15 N -0.686 5.686 16 C 0.066 3.934 17 C 0.435 3.565 18 O -0.624 6.624 19 N -0.571 5.571 20 C -0.334 4.334 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.268 1.268 27 H -0.274 1.274 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.204 0.796 32 H 0.175 0.825 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.095 0.905 41 H 0.338 0.662 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.041 -0.556 -13.246 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.297 4.297 3 S 0.466 5.534 4 C -0.359 4.359 5 C -0.139 4.139 6 C -0.203 4.203 7 C 0.367 3.633 8 O -0.457 6.457 9 N -0.332 5.332 10 C -0.074 4.074 11 C 0.033 3.967 12 H 0.092 0.908 13 C -0.204 4.204 14 C -0.077 4.077 15 N -0.319 5.319 16 C -0.066 4.066 17 C 0.222 3.778 18 O -0.510 6.510 19 N -0.208 5.208 20 C -0.464 4.464 21 H 0.094 0.906 22 C -0.210 4.210 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.192 1.192 27 H -0.198 1.198 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.221 0.779 32 H 0.192 0.808 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.156 0.844 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.231 0.769 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 18.491 1.106 -14.184 23.331 hybrid contribution 0.033 -1.094 1.217 1.636 sum 18.524 0.013 -12.967 22.612 Atomic orbital electron populations 1.20431 0.88360 1.03969 1.02514 1.24551 1.01523 0.98724 1.04884 1.82916 0.94994 1.05917 1.69552 1.25831 1.03084 0.96637 1.10333 1.21408 0.92913 0.97461 1.02113 1.20260 0.94769 0.92654 1.12586 1.18005 0.81438 0.84603 0.79269 1.90725 1.30577 1.81759 1.42680 1.47796 1.29858 1.12321 1.43209 1.22194 0.86622 1.02508 0.96117 1.21194 0.96952 0.81990 0.96541 0.90814 1.22006 0.98790 0.97812 1.01787 1.22465 0.95270 0.95106 0.94908 1.59983 1.45114 1.06005 1.20790 1.21545 0.97881 0.97101 0.90091 1.20924 0.85256 0.89352 0.82254 1.90502 1.65538 1.40873 1.54087 1.41900 1.43155 1.23221 1.12554 1.19637 1.25156 1.03036 0.98572 0.90631 1.26009 0.99272 1.00571 0.95193 1.69662 1.45432 1.32918 1.07978 0.84955 0.78117 0.77744 0.77689 1.19760 1.19237 1.19847 0.92032 0.89275 0.91147 0.77904 0.80767 0.89447 0.91161 0.89758 0.92496 0.90213 0.89826 0.92571 0.88643 0.84359 0.87684 0.91313 0.76927 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.02 10.02 71.24 0.71 -2.30 16 2 C -0.18 -4.98 6.33 25.17 0.16 -4.82 16 3 S 0.20 3.93 22.97 -56.49 -1.30 2.64 16 4 C -0.22 -3.35 11.12 66.64 0.74 -2.61 16 5 C -0.11 -1.97 8.17 22.67 0.19 -1.79 16 6 C -0.19 -5.01 5.08 -19.87 -0.10 -5.11 16 7 C 0.58 18.15 7.17 86.60 0.62 18.77 16 8 O -0.58 -23.00 14.54 -4.13 -0.06 -23.06 16 9 N -0.60 -14.36 1.83 -826.74 -1.52 -15.87 16 10 C 0.07 1.06 8.08 127.77 1.03 2.09 16 11 C 0.14 3.17 2.94 44.99 0.13 3.31 16 12 H 0.07 2.29 6.91 -2.39 -0.02 2.27 16 13 C -0.15 -2.15 9.19 71.98 0.66 -1.49 16 14 C 0.05 1.20 5.00 86.30 0.43 1.63 16 15 N -0.69 -23.45 6.12 -517.92 -3.17 -26.62 16 16 C 0.07 2.34 6.17 85.56 0.53 2.87 16 17 C 0.43 21.46 7.82 87.66 0.69 22.15 16 18 O -0.62 -36.25 15.78 -3.08 -0.05 -36.30 16 19 N -0.57 -29.90 5.29 -306.98 -1.62 -31.53 16 20 C -0.33 -19.39 9.68 84.04 0.81 -18.58 16 21 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 22 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 23 N -0.92 -49.85 13.05 21.66 0.28 -49.57 16 24 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 28 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 30 H 0.07 2.61 6.19 -2.39 -0.01 2.60 16 31 H 0.20 1.50 8.06 -2.91 -0.02 1.48 16 32 H 0.18 2.04 6.35 -2.91 -0.02 2.02 16 33 H 0.09 0.84 7.16 -2.39 -0.02 0.82 16 34 H 0.07 1.22 6.05 -2.39 -0.01 1.21 16 35 H 0.08 1.11 6.53 -2.39 -0.02 1.10 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 0.85 7.67 -2.39 -0.02 0.83 16 38 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.06 1.02 6.86 -2.39 -0.02 1.01 16 40 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.34 12.67 7.56 -89.70 -0.68 12.00 16 42 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 45 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -78.77 382.41 1.30 -77.48 By element: Atomic # 1 Polarization: 43.66 SS G_CDS: -0.37 Total: 43.29 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 7.07 Total: 14.01 kcal Atomic # 7 Polarization: -117.56 SS G_CDS: -6.02 Total: -123.58 kcal Atomic # 8 Polarization: -59.25 SS G_CDS: -0.11 Total: -59.36 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.30 Total: 2.64 kcal Total: -78.77 1.30 -77.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715326234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.444 kcal (2) G-P(sol) polarization free energy of solvation -78.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds