Wall clock time and date at job start Tue Mar 31 2020 22:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48507 * 109.46850 * 269.99909 * 3 2 1 5 5 H 1.48498 * 109.47329 * 29.99336 * 3 2 1 6 6 H 1.48499 * 109.47220 * 150.00323 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 H 1.09002 * 110.01961 * 34.01779 * 14 13 11 16 16 C 1.54267 * 110.03022 * 272.62985 * 14 13 11 17 17 C 1.54973 * 104.15703 * 217.13964 * 16 14 13 18 18 C 1.54879 * 102.77934 * 37.88680 * 17 16 14 19 19 C 1.53869 * 110.03273 * 155.41273 * 14 13 11 20 20 H 1.09005 * 110.03818 * 238.56945 * 19 14 13 21 21 C 1.53006 * 110.03547 * 359.94802 * 19 14 13 22 22 N 1.46898 * 109.47481 * 184.99964 * 21 19 14 23 23 C 1.46899 * 110.99780 * 179.97438 * 22 21 19 24 24 C 1.50698 * 109.46912 * 180.02562 * 23 22 21 25 25 C 1.41376 * 126.80537 * 95.00253 * 24 23 22 26 26 C 1.35445 * 103.98936 * 179.97438 * 25 24 23 27 27 O 1.34034 * 106.44946 * 0.02562 * 26 25 24 28 28 N 1.20927 * 111.56506 * 359.70806 * 27 26 25 29 29 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 31 31 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 32 32 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 33 33 H 1.09004 * 110.48770 * 335.78038 * 16 14 13 34 34 H 1.08999 * 110.48692 * 98.43166 * 16 14 13 35 35 H 1.08996 * 110.71488 * 279.56696 * 17 16 14 36 36 H 1.08999 * 110.92162 * 156.30021 * 17 16 14 37 37 H 1.08997 * 110.48728 * 203.40613 * 18 17 16 38 38 H 1.08997 * 110.60103 * 80.81913 * 18 17 16 39 39 H 1.09002 * 109.46694 * 305.00793 * 21 19 14 40 40 H 1.09007 * 109.46725 * 64.99463 * 21 19 14 41 41 H 1.00893 * 110.99585 * 56.04856 * 22 21 19 42 42 H 1.08994 * 109.47212 * 300.00025 * 23 22 21 43 43 H 1.09000 * 109.46932 * 60.00536 * 23 22 21 44 44 H 1.08007 * 128.00412 * 0.03678 * 25 24 23 45 45 H 1.08002 * 126.77719 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 1 1.4070 -7.7653 -0.5804 16 6 2.0774 -8.1903 1.4419 17 6 2.4884 -9.6845 1.4272 18 6 3.7278 -9.6897 0.4985 19 6 3.3791 -8.6681 -0.6036 20 1 2.9642 -9.1816 -1.4710 21 6 4.6296 -7.8844 -1.0077 22 7 5.5727 -8.7830 -1.6866 23 6 6.7878 -8.0631 -2.0905 24 6 7.7290 -9.0150 -2.7826 25 6 7.8459 -9.2278 -4.1753 26 6 8.8172 -10.1656 -4.2829 27 8 9.2092 -10.4512 -3.0334 28 7 8.5992 -9.8006 -2.2166 29 1 -0.4849 0.8400 -0.0004 30 1 3.1246 -3.7313 0.8905 31 1 3.1246 -3.7313 -0.8894 32 1 3.8011 -6.1834 0.0015 33 1 2.6985 -7.6310 2.1417 34 1 1.0232 -8.0863 1.6986 35 1 1.6908 -10.2996 1.0106 36 1 2.7540 -10.0250 2.4279 37 1 3.8774 -10.6796 0.0675 38 1 4.6171 -9.3739 1.0439 39 1 4.3490 -7.0752 -1.6821 40 1 5.1010 -7.4681 -0.1174 41 1 5.1381 -9.2313 -2.4792 42 1 6.5219 -7.2556 -2.7726 43 1 7.2744 -7.6479 -1.2079 44 1 7.2900 -8.7518 -4.9697 45 1 9.1998 -10.5985 -5.1954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716056317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:35 Heat of formation + Delta-G solvation = 22.791634 kcal Electronic energy + Delta-G solvation = -26182.701687 eV Core-core repulsion = 22329.533092 eV Total energy + Delta-G solvation = -3853.168595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.30606 -40.08923 -38.10307 -36.57514 -34.03798 -33.49987 -32.44093 -32.05726 -30.19453 -29.63857 -27.04978 -26.51577 -25.46355 -23.82987 -23.42275 -21.55456 -21.01007 -20.60437 -19.44706 -18.17608 -17.95371 -17.84084 -16.64857 -16.56279 -15.93028 -15.48448 -15.09587 -15.01045 -14.81833 -14.62747 -14.43747 -14.25978 -13.88035 -13.80478 -13.36127 -13.13739 -12.70279 -12.52786 -12.40457 -12.23644 -11.73128 -11.65364 -11.38864 -11.11804 -11.07760 -11.05745 -11.03605 -10.79268 -10.76901 -10.73043 -10.54583 -10.04109 -9.82574 -9.38377 -9.08347 -8.95238 -8.77943 -8.24826 -6.51229 -6.23001 -3.93510 1.12562 1.78839 2.88061 3.03206 3.09367 3.20937 3.26841 3.31092 3.59242 3.73981 3.86383 4.18731 4.19342 4.42820 4.45420 4.58165 4.72705 4.84194 4.90337 5.05554 5.11243 5.12172 5.14717 5.21957 5.22995 5.31172 5.36772 5.44157 5.49156 5.54101 5.58758 5.62122 5.67358 5.84814 5.87339 5.94444 6.11336 6.13413 6.15616 6.24331 6.47450 6.70005 6.88561 7.58102 7.70404 7.90457 8.33774 8.62372 9.22303 10.84395 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.002298 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.312123 B =12184.140573 C =14356.747549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.516 6.516 13 N -0.736 5.736 14 C 0.149 3.851 15 H 0.091 0.909 16 C -0.134 4.134 17 C -0.127 4.127 18 C -0.104 4.104 19 C -0.095 4.095 20 H 0.080 0.920 21 C 0.059 3.941 22 N -0.679 5.679 23 C 0.135 3.865 24 C 0.018 3.982 25 C -0.232 4.232 26 C -0.061 4.061 27 O 0.101 5.899 28 N -0.346 5.346 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.397 0.603 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.343 0.657 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.171 0.829 45 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.991 -22.852 -6.912 28.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.317 3.683 12 O -0.390 6.390 13 N -0.392 5.392 14 C 0.043 3.957 15 H 0.109 0.891 16 C -0.173 4.173 17 C -0.165 4.165 18 C -0.142 4.142 19 C -0.114 4.114 20 H 0.098 0.902 21 C -0.070 4.070 22 N -0.311 5.311 23 C 0.005 3.995 24 C -0.142 4.142 25 C -0.254 4.254 26 C -0.142 4.142 27 O 0.032 5.968 28 N -0.049 5.049 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.233 0.767 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.161 0.839 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.188 0.812 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 14.449 -23.513 -5.040 28.054 hybrid contribution 1.740 2.209 -1.698 3.285 sum 16.189 -21.304 -6.738 27.592 Atomic orbital electron populations 1.70016 1.05940 1.27456 1.46846 1.24996 0.95033 0.99029 0.94552 0.86171 0.79423 0.81588 0.78334 1.20287 1.20729 1.19703 1.22865 0.94884 0.91687 1.58950 0.90977 1.85399 1.04898 0.96273 1.96702 1.23538 1.06567 0.95607 1.04766 1.20326 0.86637 0.86327 0.75012 1.90696 1.15372 1.85577 1.47394 1.46364 1.09885 1.05336 1.77662 1.21555 0.97069 0.80543 0.96574 0.89057 1.22810 1.02277 0.95635 0.96587 1.22517 0.97842 0.96310 0.99827 1.22275 0.97782 0.98528 0.95585 1.22010 0.94088 0.96134 0.99175 0.90174 1.22109 0.92018 0.94070 0.98774 1.60407 1.06460 1.32122 1.32098 1.20183 0.88822 0.91590 0.98890 1.23494 0.98882 1.00134 0.91677 1.22801 1.02860 1.02892 0.96849 1.26032 0.98519 0.99588 0.90062 1.84878 1.49306 1.49392 1.13194 1.73895 1.08266 1.07011 1.15684 0.92179 0.89310 0.89436 0.76676 0.91110 0.90943 0.91498 0.91473 0.91509 0.91175 0.93884 0.90353 0.83901 0.92486 0.89033 0.81178 0.76741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.21 9.50 30.94 0.29 -14.91 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 11 C 0.53 9.72 7.84 -10.98 -0.09 9.64 16 12 O -0.52 -11.56 15.53 5.55 0.09 -11.47 16 13 N -0.74 -9.57 4.41 -52.72 -0.23 -9.80 16 14 C 0.15 1.71 3.21 -66.82 -0.21 1.50 16 15 H 0.09 1.24 7.58 -51.93 -0.39 0.84 16 16 C -0.13 -1.51 6.54 -25.03 -0.16 -1.67 16 17 C -0.13 -1.12 6.91 -24.70 -0.17 -1.29 16 18 C -0.10 -0.87 6.19 -25.08 -0.16 -1.03 16 19 C -0.09 -0.81 3.08 -89.50 -0.28 -1.09 16 20 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 21 C 0.06 0.47 3.61 -3.82 -0.01 0.46 16 22 N -0.68 -5.25 6.31 -115.06 -0.73 -5.97 16 23 C 0.13 1.04 6.27 -4.98 -0.03 1.01 16 24 C 0.02 0.15 6.84 -82.10 -0.56 -0.41 16 25 C -0.23 -1.41 11.12 -39.39 -0.44 -1.85 16 26 C -0.06 -0.31 12.30 29.74 0.37 0.06 16 27 O 0.10 0.84 11.20 17.19 0.19 1.04 16 28 N -0.35 -3.59 12.07 33.42 0.40 -3.19 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 31 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 32 H 0.40 4.16 5.87 -40.82 -0.24 3.92 16 33 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.63 7.76 -51.93 -0.40 0.23 16 39 H 0.04 0.36 7.41 -51.93 -0.38 -0.02 16 40 H 0.08 0.63 7.11 -51.93 -0.37 0.26 16 41 H 0.34 2.41 8.72 -39.30 -0.34 2.07 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.17 0.66 8.06 -52.48 -0.42 0.24 16 45 H 0.22 0.13 8.06 -52.49 -0.42 -0.29 16 LS Contribution 387.27 15.07 5.84 5.84 Total: -1.00 -35.40 387.27 -9.01 -44.42 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.75 Total: 2.46 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -1.33 Total: -10.45 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.18 Total: -44.34 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.28 Total: -10.43 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.40 -9.01 -44.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716056317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.210 kcal (2) G-P(sol) polarization free energy of solvation -35.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds