Wall clock time and date at job start Tue Mar 31 2020 22:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48507 * 109.46850 * 269.99909 * 3 2 1 5 5 H 1.48498 * 109.47329 * 29.99336 * 3 2 1 6 6 H 1.48499 * 109.47220 * 150.00323 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 H 1.09002 * 110.01961 * 34.01779 * 14 13 11 16 16 C 1.54267 * 110.03022 * 272.62985 * 14 13 11 17 17 C 1.54973 * 104.15703 * 217.13964 * 16 14 13 18 18 C 1.54879 * 102.77934 * 37.88680 * 17 16 14 19 19 C 1.53869 * 110.03273 * 155.41273 * 14 13 11 20 20 H 1.09005 * 110.03818 * 238.56945 * 19 14 13 21 21 C 1.53006 * 110.03547 * 359.94802 * 19 14 13 22 22 N 1.46898 * 109.47481 * 184.99964 * 21 19 14 23 23 C 1.46899 * 110.99780 * 179.97438 * 22 21 19 24 24 C 1.50698 * 109.46912 * 180.02562 * 23 22 21 25 25 C 1.41376 * 126.80537 * 95.00253 * 24 23 22 26 26 C 1.35445 * 103.98936 * 179.97438 * 25 24 23 27 27 O 1.34034 * 106.44946 * 0.02562 * 26 25 24 28 28 N 1.20927 * 111.56506 * 359.70806 * 27 26 25 29 29 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 31 31 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 32 32 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 33 33 H 1.09004 * 110.48770 * 335.78038 * 16 14 13 34 34 H 1.08999 * 110.48692 * 98.43166 * 16 14 13 35 35 H 1.08996 * 110.71488 * 279.56696 * 17 16 14 36 36 H 1.08999 * 110.92162 * 156.30021 * 17 16 14 37 37 H 1.08997 * 110.48728 * 203.40613 * 18 17 16 38 38 H 1.08997 * 110.60103 * 80.81913 * 18 17 16 39 39 H 1.09002 * 109.46694 * 305.00793 * 21 19 14 40 40 H 1.09007 * 109.46725 * 64.99463 * 21 19 14 41 41 H 1.00893 * 110.99585 * 56.04856 * 22 21 19 42 42 H 1.08994 * 109.47212 * 300.00025 * 23 22 21 43 43 H 1.09000 * 109.46932 * 60.00536 * 23 22 21 44 44 H 1.08007 * 128.00412 * 0.03678 * 25 24 23 45 45 H 1.08002 * 126.77719 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 1 1.4070 -7.7653 -0.5804 16 6 2.0774 -8.1903 1.4419 17 6 2.4884 -9.6845 1.4272 18 6 3.7278 -9.6897 0.4985 19 6 3.3791 -8.6681 -0.6036 20 1 2.9642 -9.1816 -1.4710 21 6 4.6296 -7.8844 -1.0077 22 7 5.5727 -8.7830 -1.6866 23 6 6.7878 -8.0631 -2.0905 24 6 7.7290 -9.0150 -2.7826 25 6 7.8459 -9.2278 -4.1753 26 6 8.8172 -10.1656 -4.2829 27 8 9.2092 -10.4512 -3.0334 28 7 8.5992 -9.8006 -2.2166 29 1 -0.4849 0.8400 -0.0004 30 1 3.1246 -3.7313 0.8905 31 1 3.1246 -3.7313 -0.8894 32 1 3.8011 -6.1834 0.0015 33 1 2.6985 -7.6310 2.1417 34 1 1.0232 -8.0863 1.6986 35 1 1.6908 -10.2996 1.0106 36 1 2.7540 -10.0250 2.4279 37 1 3.8774 -10.6796 0.0675 38 1 4.6171 -9.3739 1.0439 39 1 4.3490 -7.0752 -1.6821 40 1 5.1010 -7.4681 -0.1174 41 1 5.1381 -9.2313 -2.4792 42 1 6.5219 -7.2556 -2.7726 43 1 7.2744 -7.6479 -1.2079 44 1 7.2900 -8.7518 -4.9697 45 1 9.1998 -10.5985 -5.1954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716056317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:34 Heat of formation + Delta-G solvation = -2.322163 kcal Electronic energy + Delta-G solvation = -26183.790703 eV Core-core repulsion = 22329.533092 eV Total energy + Delta-G solvation = -3854.257611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.85340 -41.22269 -39.26872 -37.25177 -34.74713 -34.61327 -34.58222 -32.56263 -31.20488 -30.81839 -28.15801 -27.58498 -27.19090 -24.52307 -23.94738 -22.31099 -21.92824 -21.56194 -20.40121 -19.84886 -18.68023 -18.49814 -18.04499 -17.45622 -16.88896 -16.77705 -16.43429 -16.37141 -15.93712 -15.66616 -15.44825 -15.15830 -14.92213 -14.57288 -14.43386 -14.33615 -13.98053 -13.70949 -13.17826 -13.17212 -13.10738 -12.90839 -12.79817 -12.61120 -12.33102 -12.15460 -11.91317 -11.78872 -11.72404 -11.59984 -11.48734 -11.15053 -11.12078 -10.93290 -10.53039 -10.28374 -10.08746 -9.46589 -8.67365 -8.35445 -6.13419 0.66824 1.26148 1.28382 1.41590 1.46429 1.56831 1.61284 2.25026 2.29331 2.50703 2.98618 3.02735 3.28374 3.32719 3.60978 3.65673 3.74601 3.86566 3.98793 4.21773 4.26345 4.28278 4.36343 4.42097 4.47320 4.48643 4.50922 4.53445 4.58122 4.72115 4.73496 4.77935 4.86984 4.87380 5.08545 5.17493 5.17934 5.22461 5.32686 5.40988 5.49819 5.57474 5.85415 6.18988 6.31801 6.48027 7.05849 7.24384 7.40581 8.73706 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.002298 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.312123 B =12184.140573 C =14356.747549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.150 6.150 10 C -0.131 4.131 11 C 0.534 3.466 12 O -0.564 6.564 13 N -0.709 5.709 14 C 0.146 3.854 15 H 0.071 0.929 16 C -0.136 4.136 17 C -0.119 4.119 18 C -0.096 4.096 19 C -0.083 4.083 20 H 0.090 0.910 21 C 0.063 3.937 22 N -0.679 5.679 23 C 0.136 3.864 24 C 0.004 3.996 25 C -0.242 4.242 26 C -0.046 4.046 27 O 0.085 5.915 28 N -0.388 5.388 29 H 0.271 0.729 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.413 0.587 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.041 0.959 40 H 0.080 0.920 41 H 0.348 0.652 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.192 0.808 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.618 -23.561 -7.999 31.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.078 5.922 10 C -0.282 4.282 11 C 0.320 3.680 12 O -0.442 6.442 13 N -0.365 5.365 14 C 0.040 3.960 15 H 0.089 0.911 16 C -0.174 4.174 17 C -0.157 4.157 18 C -0.134 4.134 19 C -0.103 4.103 20 H 0.109 0.891 21 C -0.066 4.066 22 N -0.312 5.312 23 C 0.007 3.993 24 C -0.155 4.155 25 C -0.264 4.264 26 C -0.127 4.127 27 O 0.019 5.981 28 N -0.093 5.093 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.252 0.748 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.167 0.833 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.209 0.791 45 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 17.136 -24.270 -6.134 30.336 hybrid contribution 0.970 2.285 -1.403 2.851 sum 18.106 -21.985 -7.537 29.462 Atomic orbital electron populations 1.70182 1.07955 1.28602 1.48000 1.26133 0.95977 1.03326 0.93775 0.84955 0.78183 0.76038 0.78815 1.19239 1.20333 1.18245 1.23198 0.95318 0.92020 1.58840 0.89958 1.85580 1.10474 0.99157 1.97035 1.23383 1.03590 0.94582 1.06632 1.20077 0.86332 0.86675 0.74959 1.90688 1.17388 1.86049 1.50034 1.46129 1.10096 1.04943 1.75340 1.21693 0.97401 0.79886 0.96975 0.91101 1.22777 1.00998 0.97647 0.96013 1.22484 0.98230 0.94304 1.00675 1.22216 0.97253 0.98762 0.95135 1.21919 0.93426 0.95409 0.99496 0.89131 1.22023 0.91732 0.93958 0.98876 1.60356 1.06335 1.32014 1.32520 1.20171 0.88561 0.91792 0.98806 1.23789 0.98705 0.99977 0.92993 1.23123 1.03576 1.03476 0.96217 1.26864 0.97343 0.98482 0.90015 1.84822 1.49455 1.49420 1.14366 1.73892 1.09710 1.08520 1.17156 0.91998 0.87482 0.87256 0.74787 0.91455 0.92996 0.90877 0.90535 0.90579 0.91387 0.94078 0.90215 0.83311 0.91253 0.89953 0.79085 0.72548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.95 13.22 21.65 0.29 -55.67 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.47 29.55 68.60 2.03 45.50 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.55 -31.09 9.50 67.96 0.65 -30.44 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.29 20.57 -56.49 -1.16 -9.46 16 10 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 11 C 0.53 19.49 7.84 87.66 0.69 20.18 16 12 O -0.56 -25.99 15.53 -3.04 -0.05 -26.04 16 13 N -0.71 -17.68 4.41 -439.10 -1.93 -19.61 16 14 C 0.15 3.26 3.21 45.71 0.15 3.41 16 15 H 0.07 1.94 7.58 -2.39 -0.02 1.92 16 16 C -0.14 -2.99 6.54 31.70 0.21 -2.78 16 17 C -0.12 -1.91 6.91 31.91 0.22 -1.68 16 18 C -0.10 -1.39 6.19 31.67 0.20 -1.20 16 19 C -0.08 -1.27 3.08 -10.07 -0.03 -1.30 16 20 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 21 C 0.06 0.88 3.61 86.31 0.31 1.19 16 22 N -0.68 -9.20 6.31 -517.93 -3.27 -12.47 16 23 C 0.14 1.89 6.27 85.56 0.54 2.43 16 24 C 0.00 0.07 6.84 43.58 0.30 0.37 16 25 C -0.24 -2.39 11.12 22.40 0.25 -2.14 16 26 C -0.05 -0.35 12.30 67.17 0.83 0.47 16 27 O 0.09 1.34 11.20 71.69 0.80 2.14 16 28 N -0.39 -7.79 12.07 -49.54 -0.60 -8.39 16 29 H 0.27 15.44 8.31 -92.72 -0.77 14.67 16 30 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 31 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 32 H 0.41 7.81 5.87 -92.71 -0.54 7.27 16 33 H 0.07 1.52 8.05 -2.39 -0.02 1.50 16 34 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.06 7.76 -2.39 -0.02 1.04 16 39 H 0.04 0.60 7.41 -2.39 -0.02 0.58 16 40 H 0.08 1.10 7.11 -2.38 -0.02 1.09 16 41 H 0.35 4.15 8.72 -89.70 -0.78 3.36 16 42 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.19 0.92 8.06 -2.91 -0.02 0.89 16 45 H 0.26 -0.68 8.06 -2.91 -0.02 -0.71 16 Total: -1.00 -80.08 387.27 0.99 -79.09 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -0.31 Total: 19.91 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 5.20 Total: -15.01 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -5.52 Total: -96.14 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: 0.76 Total: -23.90 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.46 kcal Total: -80.08 0.99 -79.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716056317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.767 kcal (2) G-P(sol) polarization free energy of solvation -80.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds