Wall clock time and date at job start Tue Mar 31 2020 22:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48498 * 109.47157 * 240.00399 * 3 2 1 5 5 H 1.48496 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46802 * 120.00663 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 H 1.09004 * 110.67615 * 31.76166 * 14 13 11 16 16 C 1.54889 * 110.75588 * 268.32369 * 14 13 11 17 17 C 1.54274 * 104.19545 * 203.74397 * 16 14 13 18 18 C 1.53878 * 106.59768 * 23.61314 * 17 16 14 19 19 C 1.54269 * 106.59875 * 359.97438 * 18 17 16 20 20 H 1.09003 * 110.48363 * 95.07042 * 19 18 17 21 21 C 1.52996 * 110.60054 * 217.65541 * 19 18 17 22 22 N 1.46903 * 109.47339 * 289.84623 * 21 19 18 23 23 C 1.46898 * 110.99922 * 180.02562 * 22 21 19 24 24 C 1.50704 * 109.46871 * 180.02562 * 23 22 21 25 25 C 1.41381 * 126.80428 * 94.99974 * 24 23 22 26 26 C 1.35441 * 103.98402 * 179.97438 * 25 24 23 27 27 O 1.34041 * 106.45070 * 359.97438 * 26 25 24 28 28 N 1.20917 * 111.56369 * 359.71559 * 27 26 25 29 29 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 30 30 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 31 31 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 32 32 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 33 33 H 1.09000 * 110.48700 * 322.42492 * 16 14 13 34 34 H 1.08999 * 110.48605 * 85.07180 * 16 14 13 35 35 H 1.08997 * 110.03141 * 264.32889 * 17 16 14 36 36 H 1.09002 * 110.02847 * 142.89299 * 17 16 14 37 37 H 1.08999 * 110.02923 * 240.71414 * 18 17 16 38 38 H 1.08993 * 110.07423 * 119.30699 * 18 17 16 39 39 H 1.09003 * 109.46912 * 49.84362 * 21 19 18 40 40 H 1.08994 * 109.47030 * 169.84198 * 21 19 18 41 41 H 1.00897 * 110.99890 * 56.03802 * 22 21 19 42 42 H 1.09002 * 109.46847 * 299.99591 * 23 22 21 43 43 H 1.08997 * 109.47390 * 60.00242 * 23 22 21 44 44 H 1.08000 * 128.00259 * 359.96462 * 25 24 23 45 45 H 1.08003 * 126.77578 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 2.3305 -7.7150 0.0094 15 1 1.3833 -7.7738 -0.5270 16 6 2.1779 -8.2372 1.4596 17 6 2.2420 -9.7721 1.3178 18 6 2.9982 -10.0613 0.0092 19 6 3.3666 -8.6922 -0.5988 20 1 4.3772 -8.4053 -0.3081 21 6 3.2392 -8.7282 -2.1230 22 7 4.3072 -9.5665 -2.6841 23 6 4.2165 -9.6240 -4.1491 24 6 5.3252 -10.4913 -4.6874 25 6 5.2464 -11.8667 -5.0049 26 6 6.4904 -12.1730 -5.4443 27 8 7.2068 -11.0423 -5.3743 28 7 6.5433 -10.1208 -4.9586 29 1 -0.4851 0.8400 0.0004 30 1 3.1252 -3.7317 0.8875 31 1 3.1238 -3.7309 -0.8925 32 1 3.8010 -6.1834 0.0019 33 1 2.9965 -7.8771 2.0828 34 1 1.2177 -7.9324 1.8758 35 1 1.2345 -10.1846 1.2658 36 1 2.7794 -10.2029 2.1626 37 1 2.3576 -10.6143 -0.6777 38 1 3.9024 -10.6330 0.2181 39 1 2.2694 -9.1438 -2.3968 40 1 3.3257 -7.7164 -2.5188 41 1 4.2881 -10.4924 -2.2836 42 1 3.2535 -10.0455 -4.4373 43 1 4.3102 -8.6182 -4.5587 44 1 4.3920 -12.5215 -4.9172 45 1 6.8366 -13.1378 -5.7848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716056318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:39 Heat of formation + Delta-G solvation = 12.432382 kcal Electronic energy + Delta-G solvation = -25892.126141 eV Core-core repulsion = 22038.508335 eV Total energy + Delta-G solvation = -3853.617806 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.31194 -39.85883 -38.18346 -36.58473 -34.09706 -33.46000 -32.40972 -32.06388 -30.22546 -29.63986 -27.20424 -26.47194 -25.43921 -23.66313 -23.35323 -21.54941 -20.92202 -20.50543 -19.78083 -18.21750 -17.90691 -17.76340 -16.91099 -16.42277 -16.19045 -15.20140 -15.12302 -14.98438 -14.78935 -14.75084 -14.37011 -14.02928 -13.80335 -13.68127 -13.29216 -13.07742 -12.99193 -12.64385 -12.44709 -12.28277 -11.94218 -11.62279 -11.42088 -11.35161 -11.02973 -11.02300 -10.97927 -10.83854 -10.74052 -10.64519 -10.56562 -10.04821 -9.80334 -9.36600 -9.04466 -8.88431 -8.81495 -8.22166 -6.48046 -6.19858 -3.90253 1.12510 1.78584 2.87948 3.06049 3.11263 3.25116 3.28994 3.33162 3.62841 3.74176 3.86506 4.19104 4.22473 4.37175 4.41151 4.60053 4.71327 4.81207 4.90794 5.01946 5.07949 5.15159 5.16926 5.22555 5.25171 5.30428 5.30915 5.32549 5.44405 5.50317 5.58187 5.66428 5.70756 5.71120 5.82931 5.91961 6.04115 6.13579 6.17001 6.18527 6.50868 6.72259 6.92484 7.61179 7.76073 7.91306 8.36903 8.65147 9.25380 10.87477 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012365 B = 0.002057 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.919484 B =13609.600149 C =15365.005453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.519 6.519 13 N -0.731 5.731 14 C 0.149 3.851 15 H 0.096 0.904 16 C -0.136 4.136 17 C -0.121 4.121 18 C -0.118 4.118 19 C -0.096 4.096 20 H 0.090 0.910 21 C 0.066 3.934 22 N -0.681 5.681 23 C 0.135 3.865 24 C 0.016 3.984 25 C -0.233 4.233 26 C -0.061 4.061 27 O 0.102 5.898 28 N -0.344 5.344 29 H 0.269 0.731 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.399 0.601 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.037 0.963 40 H 0.080 0.920 41 H 0.342 0.658 42 H 0.055 0.945 43 H 0.092 0.908 44 H 0.170 0.830 45 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.321 -29.030 -6.391 31.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.393 6.393 13 N -0.384 5.384 14 C 0.043 3.957 15 H 0.114 0.886 16 C -0.175 4.175 17 C -0.159 4.159 18 C -0.156 4.156 19 C -0.116 4.116 20 H 0.108 0.892 21 C -0.062 4.062 22 N -0.314 5.314 23 C 0.006 3.994 24 C -0.143 4.143 25 C -0.255 4.255 26 C -0.143 4.143 27 O 0.033 5.967 28 N -0.047 5.047 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.233 0.767 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.160 0.840 42 H 0.073 0.927 43 H 0.111 0.889 44 H 0.188 0.812 45 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 10.252 -27.548 -6.319 30.066 hybrid contribution 1.080 -0.039 -0.116 1.087 sum 11.332 -27.587 -6.435 30.510 Atomic orbital electron populations 1.70010 1.05936 1.27533 1.46855 1.24991 0.95035 0.99016 0.94557 0.86225 0.79234 0.81241 0.78815 1.19935 1.20827 1.19943 1.22833 0.94886 0.91692 1.58967 0.90988 1.85365 1.04986 0.96299 1.96721 1.23539 1.06531 0.95483 1.04919 1.20309 0.86555 0.86299 0.74872 1.90693 1.15376 1.85595 1.47627 1.45999 1.09861 1.05117 1.77450 1.21864 0.97537 0.80519 0.95808 0.88578 1.22745 1.02857 0.94807 0.97086 1.22057 1.00480 0.96077 0.97333 1.22157 1.00180 0.96294 0.97003 1.22253 1.00155 0.95387 0.93766 0.89186 1.22045 0.91694 0.98395 0.94101 1.60402 1.49216 1.18138 1.03601 1.20173 0.92017 0.98781 0.88437 1.23517 0.94064 0.93845 1.02886 1.22773 0.99750 0.95828 1.07134 1.26035 0.91726 0.93548 1.02943 1.84888 1.36725 1.14022 1.61025 1.73910 1.05844 1.11091 1.13806 0.92157 0.89253 0.89256 0.76729 0.91199 0.90860 0.91645 0.91683 0.91887 0.91392 0.94518 0.90170 0.84037 0.92674 0.88942 0.81243 0.76751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 11 C 0.53 9.89 7.85 -10.98 -0.09 9.80 16 12 O -0.52 -11.66 15.51 5.55 0.09 -11.58 16 13 N -0.73 -9.69 5.18 -51.89 -0.27 -9.96 16 14 C 0.15 1.71 2.69 -65.95 -0.18 1.53 16 15 H 0.10 1.30 7.46 -51.93 -0.39 0.91 16 16 C -0.14 -1.45 6.51 -25.07 -0.16 -1.62 16 17 C -0.12 -0.98 6.80 -25.61 -0.17 -1.15 16 18 C -0.12 -0.84 5.71 -25.61 -0.15 -0.99 16 19 C -0.10 -0.82 2.71 -88.97 -0.24 -1.06 16 20 H 0.09 0.80 8.02 -51.93 -0.42 0.38 16 21 C 0.07 0.58 5.07 -3.82 -0.02 0.56 16 22 N -0.68 -5.62 6.49 -115.06 -0.75 -6.37 16 23 C 0.14 1.10 6.27 -4.97 -0.03 1.07 16 24 C 0.02 0.14 6.84 -82.10 -0.56 -0.42 16 25 C -0.23 -1.36 11.12 -39.38 -0.44 -1.80 16 26 C -0.06 -0.30 12.30 29.73 0.37 0.06 16 27 O 0.10 0.88 11.20 17.17 0.19 1.07 16 28 N -0.34 -3.72 12.07 33.42 0.40 -3.32 16 29 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 31 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 32 H 0.40 4.31 8.57 -40.82 -0.35 3.96 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.41 7.72 -51.93 -0.40 0.01 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.04 0.31 7.96 -51.93 -0.41 -0.11 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.34 2.41 8.09 -39.29 -0.32 2.09 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.17 0.56 8.06 -52.49 -0.42 0.13 16 45 H 0.22 0.09 8.06 -52.48 -0.42 -0.34 16 LS Contribution 391.60 15.07 5.90 5.90 Total: -1.00 -35.86 391.60 -9.09 -44.95 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.90 Total: 2.19 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -1.25 Total: -10.01 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.12 Total: -45.25 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.28 Total: -10.51 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.86 -9.09 -44.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716056318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.378 kcal (2) G-P(sol) polarization free energy of solvation -35.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds