Wall clock time and date at job start Tue Mar 31 2020 22:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48498 * 109.47157 * 240.00399 * 3 2 1 5 5 H 1.48496 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46802 * 120.00663 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 H 1.09004 * 110.67615 * 31.76166 * 14 13 11 16 16 C 1.54889 * 110.75588 * 268.32369 * 14 13 11 17 17 C 1.54274 * 104.19545 * 203.74397 * 16 14 13 18 18 C 1.53878 * 106.59768 * 23.61314 * 17 16 14 19 19 C 1.54269 * 106.59875 * 359.97438 * 18 17 16 20 20 H 1.09003 * 110.48363 * 95.07042 * 19 18 17 21 21 C 1.52996 * 110.60054 * 217.65541 * 19 18 17 22 22 N 1.46903 * 109.47339 * 289.84623 * 21 19 18 23 23 C 1.46898 * 110.99922 * 180.02562 * 22 21 19 24 24 C 1.50704 * 109.46871 * 180.02562 * 23 22 21 25 25 C 1.41381 * 126.80428 * 94.99974 * 24 23 22 26 26 C 1.35441 * 103.98402 * 179.97438 * 25 24 23 27 27 O 1.34041 * 106.45070 * 359.97438 * 26 25 24 28 28 N 1.20917 * 111.56369 * 359.71559 * 27 26 25 29 29 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 30 30 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 31 31 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 32 32 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 33 33 H 1.09000 * 110.48700 * 322.42492 * 16 14 13 34 34 H 1.08999 * 110.48605 * 85.07180 * 16 14 13 35 35 H 1.08997 * 110.03141 * 264.32889 * 17 16 14 36 36 H 1.09002 * 110.02847 * 142.89299 * 17 16 14 37 37 H 1.08999 * 110.02923 * 240.71414 * 18 17 16 38 38 H 1.08993 * 110.07423 * 119.30699 * 18 17 16 39 39 H 1.09003 * 109.46912 * 49.84362 * 21 19 18 40 40 H 1.08994 * 109.47030 * 169.84198 * 21 19 18 41 41 H 1.00897 * 110.99890 * 56.03802 * 22 21 19 42 42 H 1.09002 * 109.46847 * 299.99591 * 23 22 21 43 43 H 1.08997 * 109.47390 * 60.00242 * 23 22 21 44 44 H 1.08000 * 128.00259 * 359.96462 * 25 24 23 45 45 H 1.08003 * 126.77578 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 2.3305 -7.7150 0.0094 15 1 1.3833 -7.7738 -0.5270 16 6 2.1779 -8.2372 1.4596 17 6 2.2420 -9.7721 1.3178 18 6 2.9982 -10.0613 0.0092 19 6 3.3666 -8.6922 -0.5988 20 1 4.3772 -8.4053 -0.3081 21 6 3.2392 -8.7282 -2.1230 22 7 4.3072 -9.5665 -2.6841 23 6 4.2165 -9.6240 -4.1491 24 6 5.3252 -10.4913 -4.6874 25 6 5.2464 -11.8667 -5.0049 26 6 6.4904 -12.1730 -5.4443 27 8 7.2068 -11.0423 -5.3743 28 7 6.5433 -10.1208 -4.9586 29 1 -0.4851 0.8400 0.0004 30 1 3.1252 -3.7317 0.8875 31 1 3.1238 -3.7309 -0.8925 32 1 3.8010 -6.1834 0.0019 33 1 2.9965 -7.8771 2.0828 34 1 1.2177 -7.9324 1.8758 35 1 1.2345 -10.1846 1.2658 36 1 2.7794 -10.2029 2.1626 37 1 2.3576 -10.6143 -0.6777 38 1 3.9024 -10.6330 0.2181 39 1 2.2694 -9.1438 -2.3968 40 1 3.3257 -7.7164 -2.5188 41 1 4.2881 -10.4924 -2.2836 42 1 3.2535 -10.0455 -4.4373 43 1 4.3102 -8.6182 -4.5587 44 1 4.3920 -12.5215 -4.9172 45 1 6.8366 -13.1378 -5.7848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716056318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:38 Heat of formation + Delta-G solvation = -13.806455 kcal Electronic energy + Delta-G solvation = -25893.263942 eV Core-core repulsion = 22038.508335 eV Total energy + Delta-G solvation = -3854.755607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.87382 -41.02201 -39.29868 -37.29907 -34.90609 -34.59436 -34.48691 -32.57470 -31.18951 -30.86164 -28.24821 -27.61277 -27.15853 -24.34343 -23.92384 -22.23069 -21.96300 -21.48948 -20.70327 -19.75899 -18.71651 -18.50500 -17.95079 -17.63747 -17.17280 -16.88723 -16.37949 -16.08581 -15.87238 -15.71156 -15.51259 -15.05650 -14.65222 -14.58346 -14.33679 -14.30410 -13.97774 -13.74795 -13.57408 -13.18191 -13.07604 -13.04721 -12.87679 -12.62109 -12.32256 -12.20036 -12.11416 -11.78173 -11.69636 -11.63432 -11.28602 -11.14059 -11.13632 -10.93781 -10.54039 -10.29484 -10.04123 -9.51706 -8.67515 -8.35445 -6.13541 0.66905 1.25946 1.27733 1.42923 1.45733 1.55987 1.60975 2.25576 2.30552 2.51172 2.98331 3.02128 3.29022 3.31131 3.58698 3.64393 3.72165 3.89303 3.99670 4.23036 4.25863 4.29993 4.32525 4.43075 4.44731 4.46847 4.49492 4.50404 4.56352 4.67465 4.71294 4.76579 4.85731 4.93832 5.08371 5.17274 5.18565 5.20143 5.24820 5.40545 5.47009 5.59556 5.84105 6.18656 6.36076 6.51725 7.05572 7.25462 7.41175 8.73471 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012365 B = 0.002057 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.919484 B =13609.600149 C =15365.005453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.081 0.919 9 S -0.149 6.149 10 C -0.131 4.131 11 C 0.536 3.464 12 O -0.565 6.565 13 N -0.706 5.706 14 C 0.143 3.857 15 H 0.074 0.926 16 C -0.136 4.136 17 C -0.115 4.115 18 C -0.110 4.110 19 C -0.082 4.082 20 H 0.094 0.906 21 C 0.072 3.928 22 N -0.684 5.684 23 C 0.136 3.864 24 C 0.001 3.999 25 C -0.238 4.238 26 C -0.047 4.047 27 O 0.086 5.914 28 N -0.391 5.391 29 H 0.271 0.729 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.414 0.586 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.041 0.959 40 H 0.059 0.941 41 H 0.352 0.648 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.197 0.803 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.675 -31.190 -6.511 34.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.078 5.922 10 C -0.282 4.282 11 C 0.322 3.678 12 O -0.443 6.443 13 N -0.359 5.359 14 C 0.037 3.963 15 H 0.092 0.908 16 C -0.175 4.175 17 C -0.154 4.154 18 C -0.148 4.148 19 C -0.102 4.102 20 H 0.113 0.887 21 C -0.057 4.057 22 N -0.317 5.317 23 C 0.007 3.993 24 C -0.157 4.157 25 C -0.260 4.260 26 C -0.128 4.128 27 O 0.020 5.980 28 N -0.096 5.096 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.251 0.749 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.171 0.829 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.214 0.786 45 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 12.663 -29.762 -6.440 32.978 hybrid contribution 0.386 0.466 -0.104 0.614 sum 13.049 -29.295 -6.545 32.731 Atomic orbital electron populations 1.70176 1.07923 1.28674 1.47908 1.26133 0.95999 1.03312 0.93736 0.85006 0.77818 0.75715 0.79481 1.18737 1.20282 1.18655 1.23173 0.95319 0.92092 1.58998 0.90041 1.85525 1.10468 0.99113 1.97043 1.23386 1.03576 0.94662 1.06601 1.20021 0.86277 0.86601 0.74898 1.90682 1.17324 1.86049 1.50251 1.45777 1.10059 1.04920 1.75114 1.22038 0.97701 0.79705 0.96820 0.90795 1.22715 1.01635 0.97078 0.96049 1.22034 1.01116 0.93662 0.98543 1.22136 1.01043 0.95274 0.96383 1.22138 0.99132 0.95393 0.93502 0.88736 1.21922 0.92147 0.97560 0.94086 1.60322 1.48887 1.18723 1.03779 1.20140 0.92894 0.97973 0.88289 1.23787 0.93638 0.95357 1.02950 1.23119 1.01076 0.94711 1.07048 1.26914 0.91127 0.93793 1.00925 1.84827 1.37169 1.14886 1.61135 1.73909 1.07043 1.12713 1.15950 0.91973 0.87373 0.87512 0.74893 0.90726 0.93392 0.91507 0.90169 0.90826 0.89557 0.94129 0.92242 0.82915 0.90933 0.90915 0.78630 0.72357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 2 C 0.01 0.75 5.49 84.86 0.47 1.22 16 3 Si 1.00 44.25 29.55 68.60 2.03 46.27 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.55 -31.83 9.50 67.95 0.65 -31.18 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 10 C -0.13 -5.33 6.16 71.24 0.44 -4.89 16 11 C 0.54 20.13 7.85 87.66 0.69 20.82 16 12 O -0.56 -26.43 15.51 -3.04 -0.05 -26.48 16 13 N -0.71 -18.31 5.18 -436.46 -2.26 -20.57 16 14 C 0.14 3.20 2.69 46.28 0.12 3.32 16 15 H 0.07 2.05 7.46 -2.39 -0.02 2.03 16 16 C -0.14 -2.80 6.51 31.67 0.21 -2.59 16 17 C -0.12 -1.61 6.80 31.32 0.21 -1.40 16 18 C -0.11 -1.25 5.71 31.32 0.18 -1.07 16 19 C -0.08 -1.26 2.71 -9.73 -0.03 -1.29 16 20 H 0.09 1.43 8.02 -2.39 -0.02 1.41 16 21 C 0.07 1.18 5.07 86.30 0.44 1.61 16 22 N -0.68 -10.31 6.49 -517.93 -3.36 -13.67 16 23 C 0.14 2.13 6.27 85.56 0.54 2.67 16 24 C 0.00 0.02 6.84 43.58 0.30 0.32 16 25 C -0.24 -2.19 11.12 22.40 0.25 -1.94 16 26 C -0.05 -0.34 12.30 67.17 0.83 0.49 16 27 O 0.09 1.40 11.20 71.63 0.80 2.20 16 28 N -0.39 -8.37 12.07 -49.56 -0.60 -8.97 16 29 H 0.27 15.66 8.31 -92.71 -0.77 14.88 16 30 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 31 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 32 H 0.41 8.28 8.57 -92.71 -0.79 7.49 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 0.72 7.72 -2.39 -0.02 0.70 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.04 0.64 7.96 -2.39 -0.02 0.62 16 40 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.35 4.09 8.09 -89.70 -0.73 3.37 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.20 0.60 8.06 -2.91 -0.02 0.57 16 45 H 0.26 -0.89 8.06 -2.91 -0.02 -0.91 16 Total: -1.00 -82.27 391.60 0.46 -81.81 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -0.51 Total: 19.12 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 5.28 Total: -13.90 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -5.93 Total: -99.47 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: 0.75 Total: -24.27 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -82.27 0.46 -81.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716056318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.007 kcal (2) G-P(sol) polarization free energy of solvation -82.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds