Wall clock time and date at job start Tue Mar 31 2020 22:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86804 * 120.00049 * 2 1 4 4 H 1.48499 * 109.47311 * 240.00123 * 3 2 1 5 5 H 1.48499 * 109.46868 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47212 * 119.99810 * 3 2 1 7 7 C 1.38951 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99874 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.34770 * 119.99692 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00609 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99714 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47150 * 179.97438 * 12 10 9 14 14 C 1.46899 * 111.00111 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47153 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.46799 * 60.00791 * 15 14 13 17 17 O 1.42895 * 109.47580 * 300.00636 * 15 14 13 18 18 C 1.52999 * 109.47159 * 179.97438 * 15 14 13 19 19 N 1.46500 * 109.47528 * 185.00361 * 18 15 14 20 20 C 1.34773 * 120.00431 * 180.02562 * 19 18 15 21 21 O 1.21573 * 119.99906 * 359.97438 * 20 19 18 22 22 C 1.47718 * 120.00219 * 179.72299 * 20 19 18 23 23 C 1.39659 * 120.11728 * 0.02562 * 22 20 19 24 24 C 1.37841 * 119.87797 * 179.81372 * 23 22 20 25 25 C 1.38655 * 120.11901 * 0.43480 * 24 23 22 26 26 F 1.35100 * 119.88228 * 179.76846 * 25 24 23 27 27 C 1.38659 * 120.23985 * 359.79175 * 25 24 23 28 28 C 1.37843 * 120.11844 * 0.02562 * 27 25 24 29 29 H 0.96998 * 120.00176 * 0.02562 * 1 2 3 30 30 H 0.96996 * 119.99436 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47652 * 59.99783 * 12 10 9 32 32 H 1.08999 * 109.47152 * 299.99398 * 12 10 9 33 33 H 1.00898 * 111.00020 * 303.95357 * 13 12 10 34 34 H 1.09002 * 109.46622 * 60.00281 * 14 13 12 35 35 H 1.08994 * 109.47700 * 300.00083 * 14 13 12 36 36 H 0.96701 * 113.99770 * 300.00011 * 17 15 14 37 37 H 1.09009 * 109.47054 * 65.00656 * 18 15 14 38 38 H 1.08993 * 109.47533 * 305.00748 * 18 15 14 39 39 H 0.97000 * 119.99456 * 0.02562 * 19 18 15 40 40 H 1.07998 * 120.05707 * 0.02562 * 23 22 20 41 41 H 1.07997 * 119.93822 * 180.18582 * 24 23 22 42 42 H 1.07993 * 119.93855 * 179.97438 * 27 25 24 43 43 H 1.07997 * 120.05980 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3907 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1985 -5.9794 -0.0016 14 6 1.4983 -7.2708 -0.0016 15 6 2.5233 -8.4067 -0.0028 16 1 3.1487 -8.3326 0.8869 17 8 3.3418 -8.3087 -1.1699 18 6 1.7939 -9.7517 -0.0021 19 7 2.7708 -10.8370 0.1173 20 6 2.3549 -12.1187 0.1386 21 8 1.1690 -12.3744 0.0592 22 6 3.3404 -13.2132 0.2528 23 6 4.7036 -12.9225 0.3393 24 6 5.6186 -13.9475 0.4496 25 6 5.1884 -15.2656 0.4656 26 9 6.0897 -16.2666 0.5691 27 6 3.8364 -15.5600 0.3752 28 6 2.9126 -14.5425 0.2683 29 1 -0.4850 0.8400 -0.0004 30 1 0.3535 -2.3906 0.0002 31 1 0.6176 -4.9205 -0.8913 32 1 0.6170 -4.9209 0.8886 33 1 2.8334 -5.9120 -0.7829 34 1 0.8732 -7.3450 -0.8914 35 1 0.8737 -7.3455 0.8885 36 1 2.8505 -8.3668 -2.0008 37 1 1.2380 -9.8641 -0.9330 38 1 1.1034 -9.7902 0.8403 39 1 3.7169 -10.6329 0.1810 40 1 5.0400 -11.8964 0.3233 41 1 6.6728 -13.7237 0.5196 42 1 3.5068 -16.5883 0.3877 43 1 1.8599 -14.7729 0.1976 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716077077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:44 Heat of formation + Delta-G solvation = -141.608667 kcal Electronic energy + Delta-G solvation = -27126.776071 eV Core-core repulsion = 22700.265368 eV Total energy + Delta-G solvation = -4426.510703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.49530 -40.66322 -38.96166 -38.38860 -37.84076 -35.06136 -34.64132 -33.79886 -31.90168 -31.54241 -31.24075 -30.11003 -27.30567 -25.20153 -24.07983 -23.60037 -22.94038 -21.99209 -20.87656 -19.29893 -18.80492 -17.93926 -17.88988 -17.34502 -16.73457 -16.63619 -16.18221 -15.81937 -15.76362 -15.52006 -15.34942 -14.94928 -14.62604 -14.48782 -14.32916 -14.04242 -13.83347 -13.68011 -13.51204 -13.21639 -13.10783 -12.97342 -12.66145 -12.39283 -11.85074 -11.65284 -11.60613 -11.52768 -11.21611 -11.01963 -10.60136 -10.45008 -10.27264 -10.20750 -9.78704 -9.59201 -9.51154 -9.27765 -8.49159 -8.11840 -7.97460 -6.42785 -3.83787 0.12081 0.61144 2.27925 2.63822 3.19560 3.20837 3.25343 3.29751 3.58627 3.87397 3.91213 4.06736 4.11866 4.19986 4.23343 4.25351 4.58000 4.66406 4.73714 4.74051 4.85557 5.07738 5.17121 5.20917 5.26347 5.29046 5.34993 5.46110 5.52968 5.55190 5.66341 5.71276 5.83747 5.92729 5.95185 6.17929 6.23374 7.03919 7.10610 7.33522 7.54012 7.63495 7.75768 8.04820 8.59913 9.16607 9.52765 10.04255 10.74819 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034731 B = 0.001419 C = 0.001373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.013405 B =19731.036723 C =20395.413102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.050 3.950 13 N -0.664 5.664 14 C 0.031 3.969 15 C 0.098 3.902 16 H 0.116 0.884 17 O -0.553 6.553 18 C 0.088 3.912 19 N -0.717 5.717 20 C 0.559 3.441 21 O -0.537 6.537 22 C -0.146 4.146 23 C -0.055 4.055 24 C -0.160 4.160 25 C 0.124 3.876 26 F -0.134 7.134 27 C -0.162 4.162 28 C -0.030 4.030 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.356 0.644 34 H 0.033 0.967 35 H 0.083 0.917 36 H 0.374 0.626 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.405 0.595 40 H 0.139 0.861 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.263 -29.568 -0.501 29.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.082 4.082 13 N -0.297 5.297 14 C -0.100 4.100 15 C 0.038 3.962 16 H 0.134 0.866 17 O -0.358 6.358 18 C -0.036 4.036 19 N -0.369 5.369 20 C 0.346 3.654 21 O -0.415 6.415 22 C -0.149 4.149 23 C -0.074 4.074 24 C -0.179 4.179 25 C 0.104 3.896 26 F -0.113 7.113 27 C -0.181 4.181 28 C -0.049 4.049 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.177 0.823 34 H 0.051 0.949 35 H 0.102 0.898 36 H 0.221 0.779 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.242 0.758 40 H 0.157 0.843 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.677 -29.509 0.564 29.882 hybrid contribution -0.473 0.706 -1.186 1.459 sum 4.204 -28.803 -0.622 29.114 Atomic orbital electron populations 1.69603 1.05940 1.28285 1.50489 1.25262 0.95632 0.99724 0.97254 0.85909 0.78756 0.80416 0.79085 1.19916 1.20975 1.19872 1.19667 0.93374 0.82246 1.47766 0.87947 1.41852 1.09188 1.04590 1.64347 1.19782 0.88396 0.84695 0.84612 1.90533 1.13721 1.87028 1.55339 1.21686 0.94319 0.91028 1.01195 1.59964 1.18532 0.99210 1.52034 1.22527 0.95533 0.90342 1.01606 1.22237 0.92953 0.90795 0.90207 0.86582 1.86652 1.37495 1.95939 1.15741 1.22119 0.91880 0.86200 1.03418 1.45782 1.11293 1.05302 1.74560 1.18137 0.88084 0.82599 0.76553 1.90803 1.17059 1.83872 1.49743 1.20013 0.93458 0.94227 1.07243 1.21235 0.91500 0.99681 0.94942 1.21131 1.01593 0.90777 1.04391 1.18009 0.86852 0.84999 0.99714 1.91538 1.66913 1.59796 1.93026 1.21176 0.91061 1.01272 1.04592 1.21161 1.00719 0.90326 0.92721 0.91811 0.77462 0.93894 0.89594 0.82292 0.94937 0.89839 0.77852 0.90787 0.89974 0.75830 0.84282 0.83824 0.83876 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 10 C 0.44 10.29 7.82 -10.99 -0.09 10.20 16 11 O -0.58 -15.78 15.78 5.54 0.09 -15.69 16 12 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 13 N -0.66 -10.10 6.13 -115.06 -0.70 -10.81 16 14 C 0.03 0.32 5.39 -3.82 -0.02 0.30 16 15 C 0.10 0.84 3.27 -26.73 -0.09 0.75 16 16 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 17 O -0.55 -5.02 12.62 -35.23 -0.44 -5.47 16 18 C 0.09 0.68 5.31 -4.04 -0.02 0.66 16 19 N -0.72 -5.38 5.45 -61.29 -0.33 -5.71 16 20 C 0.56 5.26 7.77 -12.39 -0.10 5.17 16 21 O -0.54 -6.90 16.34 5.30 0.09 -6.81 16 22 C -0.15 -1.10 5.87 -104.97 -0.62 -1.72 16 23 C -0.05 -0.31 9.54 -39.20 -0.37 -0.68 16 24 C -0.16 -0.91 10.01 -39.57 -0.40 -1.30 16 25 C 0.12 0.83 7.31 -39.27 -0.29 0.54 16 26 F -0.13 -1.01 17.26 2.25 0.04 -0.97 16 27 C -0.16 -0.98 10.01 -39.57 -0.40 -1.38 16 28 C -0.03 -0.21 9.59 -39.20 -0.38 -0.59 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.36 5.79 7.82 -39.29 -0.31 5.49 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.37 2.34 9.05 45.56 0.41 2.75 16 37 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.41 2.35 6.50 -40.82 -0.27 2.08 16 40 H 0.14 0.49 6.40 -52.49 -0.34 0.16 16 41 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 42 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.15 0.99 7.65 -52.49 -0.40 0.59 16 LS Contribution 379.92 15.07 5.73 5.73 Total: -1.00 -34.56 379.92 -7.47 -42.03 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -4.54 Total: 14.91 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -3.03 Total: 4.76 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.37 Total: -54.41 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.27 Total: -27.97 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.04 Total: -0.97 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.56 -7.47 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716077077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.583 kcal (2) G-P(sol) polarization free energy of solvation -34.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds