Wall clock time and date at job start Tue Mar 31 2020 22:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86804 * 120.00049 * 2 1 4 4 H 1.48499 * 109.47311 * 240.00123 * 3 2 1 5 5 H 1.48499 * 109.46868 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47212 * 119.99810 * 3 2 1 7 7 C 1.38951 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99874 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.34770 * 119.99692 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00609 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99714 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47150 * 179.97438 * 12 10 9 14 14 C 1.46899 * 111.00111 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47153 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.46799 * 60.00791 * 15 14 13 17 17 O 1.42895 * 109.47580 * 300.00636 * 15 14 13 18 18 C 1.52999 * 109.47159 * 179.97438 * 15 14 13 19 19 N 1.46500 * 109.47528 * 185.00361 * 18 15 14 20 20 C 1.34773 * 120.00431 * 180.02562 * 19 18 15 21 21 O 1.21573 * 119.99906 * 359.97438 * 20 19 18 22 22 C 1.47718 * 120.00219 * 179.72299 * 20 19 18 23 23 C 1.39659 * 120.11728 * 0.02562 * 22 20 19 24 24 C 1.37841 * 119.87797 * 179.81372 * 23 22 20 25 25 C 1.38655 * 120.11901 * 0.43480 * 24 23 22 26 26 F 1.35100 * 119.88228 * 179.76846 * 25 24 23 27 27 C 1.38659 * 120.23985 * 359.79175 * 25 24 23 28 28 C 1.37843 * 120.11844 * 0.02562 * 27 25 24 29 29 H 0.96998 * 120.00176 * 0.02562 * 1 2 3 30 30 H 0.96996 * 119.99436 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47652 * 59.99783 * 12 10 9 32 32 H 1.08999 * 109.47152 * 299.99398 * 12 10 9 33 33 H 1.00898 * 111.00020 * 303.95357 * 13 12 10 34 34 H 1.09002 * 109.46622 * 60.00281 * 14 13 12 35 35 H 1.08994 * 109.47700 * 300.00083 * 14 13 12 36 36 H 0.96701 * 113.99770 * 300.00011 * 17 15 14 37 37 H 1.09009 * 109.47054 * 65.00656 * 18 15 14 38 38 H 1.08993 * 109.47533 * 305.00748 * 18 15 14 39 39 H 0.97000 * 119.99456 * 0.02562 * 19 18 15 40 40 H 1.07998 * 120.05707 * 0.02562 * 23 22 20 41 41 H 1.07997 * 119.93822 * 180.18582 * 24 23 22 42 42 H 1.07993 * 119.93855 * 179.97438 * 27 25 24 43 43 H 1.07997 * 120.05980 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3907 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1985 -5.9794 -0.0016 14 6 1.4983 -7.2708 -0.0016 15 6 2.5233 -8.4067 -0.0028 16 1 3.1487 -8.3326 0.8869 17 8 3.3418 -8.3087 -1.1699 18 6 1.7939 -9.7517 -0.0021 19 7 2.7708 -10.8370 0.1173 20 6 2.3549 -12.1187 0.1386 21 8 1.1690 -12.3744 0.0592 22 6 3.3404 -13.2132 0.2528 23 6 4.7036 -12.9225 0.3393 24 6 5.6186 -13.9475 0.4496 25 6 5.1884 -15.2656 0.4656 26 9 6.0897 -16.2666 0.5691 27 6 3.8364 -15.5600 0.3752 28 6 2.9126 -14.5425 0.2683 29 1 -0.4850 0.8400 -0.0004 30 1 0.3535 -2.3906 0.0002 31 1 0.6176 -4.9205 -0.8913 32 1 0.6170 -4.9209 0.8886 33 1 2.8334 -5.9120 -0.7829 34 1 0.8732 -7.3450 -0.8914 35 1 0.8737 -7.3455 0.8885 36 1 2.8505 -8.3668 -2.0008 37 1 1.2380 -9.8641 -0.9330 38 1 1.1034 -9.7902 0.8403 39 1 3.7169 -10.6329 0.1810 40 1 5.0400 -11.8964 0.3233 41 1 6.6728 -13.7237 0.5196 42 1 3.5068 -16.5883 0.3877 43 1 1.8599 -14.7729 0.1976 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716077077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:43 Heat of formation + Delta-G solvation = -170.557655 kcal Electronic energy + Delta-G solvation = -27128.031393 eV Core-core repulsion = 22700.265368 eV Total energy + Delta-G solvation = -4427.766026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.02886 -41.30880 -40.19438 -39.44880 -38.75050 -36.30764 -35.69514 -35.36313 -33.26071 -32.43620 -32.07562 -30.95090 -28.56833 -26.64658 -25.12653 -24.23193 -23.71836 -22.73280 -21.54058 -21.07571 -19.91111 -19.36426 -18.46642 -18.27142 -17.61735 -17.41957 -17.11777 -16.72940 -16.61381 -16.47118 -16.38408 -16.08482 -15.80049 -15.72826 -15.34078 -15.02152 -14.80849 -14.48438 -14.36733 -14.25433 -14.01770 -13.76600 -13.65037 -13.43607 -13.18843 -13.13134 -12.91369 -12.68328 -12.42668 -12.11917 -12.10147 -11.95948 -11.49553 -11.35094 -11.01355 -10.32428 -10.27957 -10.23606 -10.01054 -9.80831 -9.31186 -8.46014 -5.94934 -0.41784 0.15830 1.40681 1.42712 1.53528 1.65834 1.98669 2.06249 2.30270 2.65697 2.90246 3.10280 3.21340 3.43780 3.50568 3.61279 3.65854 3.82215 3.90042 4.01390 4.12957 4.15366 4.23582 4.32905 4.45594 4.52004 4.57552 4.67180 4.75395 4.78450 4.85310 5.00254 5.05734 5.10224 5.18575 5.29989 5.41311 5.70843 5.87609 6.09618 6.41004 6.43532 6.60819 6.79083 7.09540 7.13201 7.56997 8.12469 8.71006 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034731 B = 0.001419 C = 0.001373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.013405 B =19731.036723 C =20395.413102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.624 6.624 12 C 0.065 3.935 13 N -0.680 5.680 14 C 0.031 3.969 15 C 0.113 3.887 16 H 0.109 0.891 17 O -0.566 6.566 18 C 0.095 3.905 19 N -0.707 5.707 20 C 0.558 3.442 21 O -0.578 6.578 22 C -0.160 4.160 23 C -0.049 4.049 24 C -0.159 4.159 25 C 0.113 3.887 26 F -0.141 7.141 27 C -0.161 4.161 28 C -0.039 4.039 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.349 0.651 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.387 0.613 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.415 0.585 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.159 0.841 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.426 -29.953 -0.582 30.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.466 4.466 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.313 5.313 14 C -0.099 4.099 15 C 0.053 3.947 16 H 0.127 0.873 17 O -0.373 6.373 18 C -0.029 4.029 19 N -0.359 5.359 20 C 0.347 3.653 21 O -0.459 6.459 22 C -0.163 4.163 23 C -0.067 4.067 24 C -0.177 4.177 25 C 0.093 3.907 26 F -0.119 7.119 27 C -0.179 4.179 28 C -0.058 4.058 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.168 0.832 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.236 0.764 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.253 0.747 40 H 0.179 0.821 41 H 0.181 0.819 42 H 0.177 0.823 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.832 -29.903 0.480 30.295 hybrid contribution -0.493 0.755 -1.170 1.477 sum 4.339 -29.148 -0.689 29.477 Atomic orbital electron populations 1.69662 1.06809 1.29363 1.50216 1.26027 0.96533 1.02373 0.96205 0.84993 0.77765 0.76665 0.78939 1.19689 1.19490 1.19770 1.19647 0.92744 0.84110 1.50128 0.90327 1.41927 1.09331 1.04712 1.65051 1.20929 0.88284 0.86248 0.82207 1.90499 1.15915 1.87977 1.56631 1.21543 0.93982 0.88056 1.03173 1.59942 1.18851 1.00535 1.51998 1.22635 0.95973 0.88356 1.02943 1.22014 0.92278 0.90455 0.89973 0.87285 1.86628 1.38195 1.95927 1.16519 1.22015 0.91721 0.85679 1.03521 1.45710 1.11830 1.04778 1.73567 1.18413 0.87823 0.83302 0.75808 1.90778 1.18731 1.84474 1.51914 1.19998 0.93934 0.93803 1.08557 1.21429 0.90553 1.00837 0.93897 1.21377 1.02641 0.90254 1.03456 1.18225 0.86982 0.85360 1.00101 1.91523 1.67101 1.60144 1.93136 1.21315 0.90797 1.01899 1.03931 1.21214 1.00854 0.90575 0.93190 0.91294 0.76948 0.91474 0.87714 0.83183 0.93066 0.88882 0.76379 0.90549 0.90104 0.74711 0.82120 0.81876 0.82300 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.24 13.05 21.66 0.28 -48.95 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 3 Si 0.99 42.64 29.55 68.60 2.03 44.66 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.34 -19.06 9.68 84.04 0.81 -18.25 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 N -0.57 -29.11 5.29 -306.98 -1.62 -30.73 16 10 C 0.44 20.43 7.82 87.66 0.69 21.12 16 11 O -0.62 -34.41 15.78 -3.08 -0.05 -34.45 16 12 C 0.06 2.10 6.17 85.56 0.53 2.63 16 13 N -0.68 -19.66 6.13 -517.94 -3.17 -22.83 16 14 C 0.03 0.56 5.39 86.30 0.47 1.03 16 15 C 0.11 1.72 3.27 30.59 0.10 1.82 16 16 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 17 O -0.57 -9.24 12.62 -148.98 -1.88 -11.12 16 18 C 0.10 1.31 5.31 86.38 0.46 1.77 16 19 N -0.71 -9.58 5.45 -466.09 -2.54 -12.12 16 20 C 0.56 10.12 7.77 86.75 0.67 10.80 16 21 O -0.58 -14.84 16.34 -3.95 -0.06 -14.91 16 22 C -0.16 -2.27 5.87 -20.09 -0.12 -2.39 16 23 C -0.05 -0.46 9.54 22.52 0.21 -0.25 16 24 C -0.16 -1.51 10.01 22.28 0.22 -1.28 16 25 C 0.11 1.37 7.31 22.47 0.16 1.53 16 26 F -0.14 -1.96 17.26 44.97 0.78 -1.19 16 27 C -0.16 -1.82 10.01 22.28 0.22 -1.60 16 28 C -0.04 -0.54 9.59 22.52 0.22 -0.32 16 29 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 30 H 0.40 19.04 7.90 -92.71 -0.73 18.31 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.10 3.03 8.14 -2.39 -0.02 3.02 16 33 H 0.35 10.99 7.82 -89.70 -0.70 10.29 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.39 4.06 9.05 -74.06 -0.67 3.39 16 37 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.41 4.00 6.50 -92.71 -0.60 3.40 16 40 H 0.16 0.73 6.40 -2.91 -0.02 0.72 16 41 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 42 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 43 H 0.14 2.00 7.65 -2.91 -0.02 1.98 16 Total: -1.00 -75.19 379.92 -2.73 -77.92 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: -1.60 Total: 37.27 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 5.11 Total: 16.45 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -7.05 Total: -114.64 kcal Atomic # 8 Polarization: -58.49 SS G_CDS: -1.99 Total: -60.49 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.78 Total: -1.19 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -75.19 -2.73 -77.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716077077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.634 kcal (2) G-P(sol) polarization free energy of solvation -75.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds