Wall clock time and date at job start Tue Mar 31 2020 23:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38215 * 120.41867 * 2 1 4 4 N 1.31854 * 120.76332 * 179.97438 * 3 2 1 5 5 C 1.31888 * 121.72838 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76199 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.41925 * 180.02562 * 6 5 4 8 8 N 1.46894 * 109.47028 * 269.97587 * 7 6 5 9 9 C 1.46903 * 110.99881 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46977 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.47210 * 59.99900 * 10 9 8 12 12 O 1.42897 * 109.47423 * 299.99917 * 10 9 8 13 13 C 1.52995 * 109.46921 * 179.97438 * 10 9 8 14 14 N 1.46496 * 109.47005 * 185.00116 * 13 10 9 15 15 C 1.34785 * 119.99960 * 180.02562 * 14 13 10 16 16 O 1.21283 * 119.99993 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99710 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.46740 * 179.97438 * 17 15 14 19 19 C 1.76202 * 100.00032 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99952 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00113 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99864 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00059 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47170 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47059 * 119.99909 * 23 21 19 26 26 H 1.48495 * 109.47161 * 240.00352 * 23 21 19 27 27 C 1.38628 * 120.41554 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.46835 * 90.00158 * 1 2 3 29 29 H 1.09001 * 109.46934 * 209.99675 * 1 2 3 30 30 H 1.08992 * 109.47378 * 330.00016 * 1 2 3 31 31 H 1.07994 * 119.62230 * 359.95780 * 3 2 1 32 32 H 1.07999 * 119.61890 * 179.97438 * 5 4 3 33 33 H 1.09008 * 109.46574 * 29.97555 * 7 6 5 34 34 H 1.08994 * 109.46982 * 149.97341 * 7 6 5 35 35 H 1.00901 * 111.00093 * 303.94915 * 8 7 6 36 36 H 1.09003 * 109.46947 * 299.99796 * 9 8 7 37 37 H 1.08996 * 109.46901 * 59.99541 * 9 8 7 38 38 H 0.96701 * 113.99626 * 300.00465 * 12 10 9 39 39 H 1.09009 * 109.47264 * 304.99853 * 13 10 9 40 40 H 1.09001 * 109.47622 * 65.00062 * 13 10 9 41 41 H 0.97003 * 120.00368 * 359.97438 * 14 13 10 42 42 H 1.09000 * 109.47364 * 299.99816 * 17 15 14 43 43 H 1.08998 * 109.47335 * 60.00274 * 17 15 14 44 44 H 0.96999 * 119.99926 * 179.97438 * 22 21 19 45 45 H 1.08003 * 120.79539 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2257 0.0823 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 4.4027 -2.4194 0.0001 8 7 4.6663 -2.8327 -1.3846 9 6 5.4530 -4.0727 -1.4232 10 6 5.7063 -4.4708 -2.8787 11 1 6.2561 -3.6758 -3.3824 12 8 4.4568 -4.6788 -3.5401 13 6 6.5262 -5.7619 -2.9188 14 7 6.8704 -6.0788 -4.3071 15 6 7.5948 -7.1803 -4.5872 16 8 7.9621 -7.9090 -3.6899 17 6 7.9484 -7.5065 -6.0154 18 16 8.9185 -9.0338 -6.0629 19 6 9.1850 -9.1732 -7.7991 20 1 8.7829 -8.4273 -8.4687 21 6 9.9125 -10.2410 -8.3061 22 7 10.4030 -11.1498 -7.4899 23 14 10.1956 -10.3884 -10.1466 24 1 9.5462 -9.2471 -10.8402 25 1 11.6540 -10.3718 -10.4260 26 1 9.6121 -11.6629 -10.6367 27 6 2.2089 -1.1955 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6676 2.1275 -0.0007 32 1 5.3047 0.1285 0.0005 33 1 5.3484 -2.2489 0.5147 34 1 3.8458 -3.2031 0.5135 35 1 3.8058 -2.9346 -1.9016 36 1 6.4060 -3.9142 -0.9184 37 1 4.9029 -4.8677 -0.9198 38 1 3.9133 -5.3739 -3.1444 39 1 7.4398 -5.6304 -2.3389 40 1 5.9407 -6.5776 -2.4945 41 1 6.5764 -5.4962 -5.0248 42 1 7.0347 -7.6378 -6.5951 43 1 8.5341 -6.6912 -6.4400 44 1 10.9111 -11.8962 -7.8442 45 1 1.6888 -2.1420 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716080485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:00 Heat of formation + Delta-G solvation = -93.391656 kcal Electronic energy + Delta-G solvation = -24901.826048 eV Core-core repulsion = 21043.619367 eV Total energy + Delta-G solvation = -3858.206681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.24250 -40.72270 -39.10319 -36.72139 -35.30257 -34.58676 -34.49455 -33.32215 -31.70664 -29.95408 -28.17403 -27.72126 -27.08396 -24.84005 -23.82678 -22.76290 -21.92774 -21.64594 -19.85826 -18.19973 -17.96716 -17.82169 -17.63867 -17.27230 -16.88840 -16.82886 -16.39168 -16.00916 -15.77558 -15.61628 -15.17722 -15.02030 -14.64890 -14.44994 -14.33506 -14.16936 -13.99069 -13.92000 -13.57911 -13.44191 -13.24722 -13.16150 -13.15982 -12.91045 -12.78635 -12.60221 -12.20648 -11.98158 -11.72727 -11.26136 -11.15994 -10.90277 -10.62480 -10.39394 -10.28136 -10.14172 -9.77963 -9.39275 -8.66889 -8.35199 -6.13105 0.12929 0.32491 1.26987 1.41428 1.46957 1.58426 1.60235 2.22432 2.27894 2.75287 2.99208 3.18827 3.32523 3.48015 3.54795 3.79636 3.81148 3.89195 3.94787 4.04901 4.06697 4.07008 4.13789 4.27359 4.29157 4.41349 4.51463 4.52785 4.67819 4.69971 4.78007 4.79830 4.83162 4.93105 5.08712 5.20156 5.28175 5.32796 5.40223 5.42226 5.78730 5.93929 6.19915 6.37342 6.47879 6.76194 7.03641 7.06489 7.22817 8.74335 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032463 B = 0.001394 C = 0.001378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.302141 B =20079.957117 C =20321.774506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.138 4.138 3 C 0.079 3.921 4 N -0.515 5.515 5 C 0.093 3.907 6 C -0.130 4.130 7 C 0.106 3.894 8 N -0.686 5.686 9 C 0.036 3.964 10 C 0.116 3.884 11 H 0.111 0.889 12 O -0.565 6.565 13 C 0.090 3.910 14 N -0.708 5.708 15 C 0.534 3.466 16 O -0.566 6.566 17 C -0.131 4.131 18 S -0.150 6.150 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.015 3.985 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.273 1.273 27 C -0.078 4.078 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.169 0.831 32 H 0.159 0.841 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.349 0.651 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.387 0.613 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.416 0.584 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.271 0.729 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.527 23.759 16.204 35.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.140 4.140 3 C -0.078 4.078 4 N -0.223 5.223 5 C -0.064 4.064 6 C -0.132 4.132 7 C -0.023 4.023 8 N -0.318 5.318 9 C -0.094 4.094 10 C 0.056 3.944 11 H 0.128 0.872 12 O -0.372 6.372 13 C -0.035 4.035 14 N -0.362 5.362 15 C 0.320 3.680 16 O -0.445 6.445 17 C -0.282 4.282 18 S 0.077 5.923 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.104 4.104 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.186 0.814 32 H 0.176 0.824 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.168 0.832 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.236 0.764 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.253 0.747 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.080 0.920 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -19.619 24.109 17.292 35.569 hybrid contribution -1.188 -1.174 -1.546 2.276 sum -20.807 22.935 15.746 34.740 Atomic orbital electron populations 1.20783 0.88227 1.04168 1.03406 1.21224 0.99028 0.93659 1.00101 1.23065 0.89716 0.98886 0.96151 1.67683 1.09504 1.32261 1.12806 1.22844 1.00796 0.87388 0.95374 1.20866 0.94617 0.96517 1.01194 1.20793 0.99221 0.92283 0.89964 1.60357 1.25567 1.33026 1.12899 1.22496 0.99979 0.91085 0.95855 1.22002 0.84512 0.94507 0.93388 0.87168 1.86614 1.30585 1.60933 1.59029 1.22109 1.00443 0.98211 0.82713 1.45642 1.54716 1.25744 1.10100 1.20032 0.77391 0.80787 0.89837 1.90689 1.54427 1.50574 1.48798 1.23377 1.04780 1.03138 0.96913 1.85525 1.68108 1.27516 1.11130 1.23249 1.40413 1.13794 0.92061 0.89986 1.26111 0.94176 0.94102 1.04632 1.70182 1.34544 1.12668 1.37355 0.84907 0.78227 0.78676 0.76146 1.18117 1.19909 1.19866 1.21718 0.93362 0.99190 0.96150 0.90162 0.90345 0.90126 0.81427 0.82372 0.89301 0.92791 0.83210 0.89122 0.93130 0.76373 0.90962 0.91368 0.74714 0.87353 0.87354 0.91967 0.83150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 10.04 71.24 0.72 0.18 16 2 C -0.14 -1.48 5.90 -19.77 -0.12 -1.59 16 3 C 0.08 1.11 10.86 84.68 0.92 2.02 16 4 N -0.51 -9.60 10.36 -195.85 -2.03 -11.63 16 5 C 0.09 1.48 10.86 84.67 0.92 2.40 16 6 C -0.13 -1.58 5.41 -19.77 -0.11 -1.69 16 7 C 0.11 0.97 5.84 85.56 0.50 1.47 16 8 N -0.69 -7.29 6.49 -517.93 -3.36 -10.66 16 9 C 0.04 0.34 5.39 86.30 0.47 0.81 16 10 C 0.12 1.45 3.27 30.59 0.10 1.55 16 11 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 12 O -0.56 -7.23 12.62 -148.98 -1.88 -9.11 16 13 C 0.09 1.68 5.31 86.38 0.46 2.14 16 14 N -0.71 -17.13 5.50 -463.05 -2.55 -19.68 16 15 C 0.53 19.34 7.85 87.66 0.69 20.03 16 16 O -0.57 -25.68 15.86 -3.04 -0.05 -25.73 16 17 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 18 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 19 C -0.55 -31.37 9.50 67.96 0.65 -30.72 16 20 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 21 C 0.01 0.83 5.49 84.86 0.47 1.30 16 22 N -0.91 -55.93 13.22 21.65 0.29 -55.64 16 23 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 C -0.08 -0.81 9.54 22.47 0.21 -0.59 16 28 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.08 0.25 8.10 -2.39 -0.02 0.23 16 30 H 0.08 0.25 8.09 -2.39 -0.02 0.23 16 31 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 32 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 33 H 0.09 0.77 8.09 -2.38 -0.02 0.75 16 34 H 0.05 0.38 8.09 -2.39 -0.02 0.36 16 35 H 0.35 3.78 8.11 -89.69 -0.73 3.06 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.05 0.38 8.14 -2.39 -0.02 0.37 16 38 H 0.39 2.81 9.05 -74.06 -0.67 2.14 16 39 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.42 8.06 8.47 -92.71 -0.79 7.27 16 42 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 43 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 44 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 45 H 0.15 0.88 8.06 -2.91 -0.02 0.85 16 Total: -1.00 -80.58 400.36 -3.57 -84.15 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -1.16 Total: 19.54 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 6.31 Total: -7.45 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -7.65 Total: -97.60 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -1.93 Total: -34.84 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -80.58 -3.57 -84.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716080485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.242 kcal (2) G-P(sol) polarization free energy of solvation -80.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds