Wall clock time and date at job start Tue Mar 31 2020 22:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00260 * 2 1 4 4 H 1.48504 * 109.46930 * 239.99771 * 3 2 1 5 5 H 1.48496 * 109.46947 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47190 * 119.99720 * 3 2 1 7 7 C 1.38819 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99625 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00022 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 N 1.46497 * 109.46900 * 180.02562 * 14 11 10 16 16 C 1.34783 * 119.99638 * 180.02562 * 15 14 11 17 17 O 1.21680 * 119.99808 * 359.97438 * 16 15 14 18 18 C 1.46682 * 119.99500 * 179.97438 * 16 15 14 19 19 S 1.76214 * 126.13651 * 0.02702 * 18 16 15 20 20 C 1.70946 * 90.31517 * 179.97438 * 19 18 16 21 21 N 1.29436 * 110.39141 * 0.02562 * 20 19 18 22 22 C 1.30943 * 117.36398 * 359.70439 * 21 20 19 23 23 C 1.50693 * 122.90303 * 180.35070 * 22 21 20 24 24 C 1.54267 * 110.03427 * 58.10062 * 23 22 21 25 25 C 1.54973 * 104.15894 * 217.13512 * 24 23 22 26 26 C 1.54893 * 102.77532 * 37.88768 * 25 24 23 27 27 C 1.53878 * 110.03427 * 300.87879 * 23 22 21 28 28 H 0.96997 * 120.00150 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99589 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47040 * 60.00172 * 10 9 7 31 31 H 1.08999 * 109.47079 * 299.99874 * 10 9 7 32 32 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 33 33 H 1.08999 * 109.47164 * 300.00361 * 14 11 10 34 34 H 1.08997 * 109.47124 * 60.00063 * 14 11 10 35 35 H 0.96996 * 120.00310 * 359.97438 * 15 14 11 36 36 H 1.08003 * 124.80438 * 179.97438 * 20 19 18 37 37 H 1.08998 * 110.01479 * 179.49156 * 23 22 21 38 38 H 1.09002 * 110.48325 * 335.78083 * 24 23 22 39 39 H 1.08996 * 110.48429 * 98.42511 * 24 23 22 40 40 H 1.08996 * 110.71578 * 279.57383 * 25 24 23 41 41 H 1.08999 * 110.75856 * 156.22289 * 25 24 23 42 42 H 1.08998 * 110.48246 * 203.40195 * 26 25 24 43 43 H 1.09000 * 110.59557 * 80.81820 * 26 25 24 44 44 H 1.08996 * 110.03492 * 238.57491 * 27 23 22 45 45 H 1.09000 * 110.03077 * 359.95749 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8198 0.0012 12 1 0.3799 -4.7127 0.8432 13 8 0.3210 -4.8120 -1.2197 14 6 1.8246 -6.1412 0.1269 15 7 0.8725 -7.2547 0.1269 16 6 1.3184 -8.5225 0.2292 17 8 2.5117 -8.7422 0.3210 18 6 0.3651 -9.6373 0.2297 19 16 -1.3877 -9.5058 0.1051 20 6 -1.5310 -11.2070 0.1927 21 7 -0.3625 -11.7530 0.3026 22 6 0.6754 -10.9549 0.3207 23 6 2.0917 -11.4564 0.4361 24 6 2.4063 -12.4231 -0.7242 25 6 3.3049 -13.5090 -0.0800 26 6 2.6737 -13.6876 1.3232 27 6 2.2621 -12.2598 1.7375 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.6846 -3.7146 0.8906 31 1 2.6846 -3.7146 -0.8895 32 1 0.8668 -4.9036 -2.0127 33 1 2.5084 -6.2483 -0.7151 34 1 2.3911 -6.1471 1.0580 35 1 -0.0787 -7.0795 0.0541 36 1 -2.4644 -11.7494 0.1618 37 1 2.7870 -10.6171 0.4218 38 1 1.4887 -12.8672 -1.1101 39 1 2.9433 -11.9041 -1.5181 40 1 4.3341 -13.1595 0.0010 41 1 3.2548 -14.4384 -0.6473 42 1 3.4060 -14.0915 2.0222 43 1 1.7995 -14.3366 1.2706 44 1 3.0406 -11.8109 2.3542 45 1 1.3205 -12.2862 2.2859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716093794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:25 Heat of formation + Delta-G solvation = -67.003304 kcal Electronic energy + Delta-G solvation = -26474.799551 eV Core-core repulsion = 22617.737155 eV Total energy + Delta-G solvation = -3857.062396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.73781 -40.43733 -38.90875 -38.31836 -36.11431 -35.41057 -33.23667 -32.46045 -30.89988 -29.60229 -29.34757 -27.15475 -26.29155 -24.59242 -22.85306 -22.71980 -21.86323 -21.51765 -20.58748 -19.24370 -18.92332 -18.33153 -17.38539 -17.27274 -17.06713 -16.52075 -16.41258 -16.21235 -15.94574 -15.58144 -15.36127 -15.23139 -14.94637 -14.77417 -14.26064 -14.19844 -14.14379 -13.86019 -13.34207 -13.28204 -12.96664 -12.72062 -12.45447 -12.21004 -12.03250 -12.00809 -11.96884 -11.89678 -11.82107 -11.81473 -11.46373 -11.08302 -11.00268 -10.95388 -10.67738 -10.61092 -10.25383 -9.85041 -9.01676 -7.95083 -5.24643 -0.80876 0.17213 0.55221 1.35465 1.47754 1.50732 1.56890 1.90549 2.01990 2.55924 3.10755 3.35386 3.45072 3.52594 3.64660 3.70510 3.76707 3.89275 3.98341 4.13656 4.18371 4.29687 4.39166 4.53044 4.58990 4.62680 4.63300 4.69101 4.74443 4.83054 4.92965 4.93043 5.05834 5.06722 5.15401 5.20231 5.24967 5.29300 5.46573 5.47938 5.53275 6.24871 6.26640 6.57732 6.76701 6.96951 7.33101 8.08170 8.31143 9.27840 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022356 B = 0.002046 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.146841 B =13684.088224 C =14592.968911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.076 4.076 3 Si 0.975 3.025 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.740 5.740 10 C 0.123 3.877 11 C 0.107 3.893 12 H 0.100 0.900 13 O -0.563 6.563 14 C 0.102 3.898 15 N -0.707 5.707 16 C 0.595 3.405 17 O -0.554 6.554 18 C -0.330 4.330 19 S 0.204 5.796 20 C 0.049 3.951 21 N -0.491 5.491 22 C 0.154 3.846 23 C -0.053 4.053 24 C -0.108 4.108 25 C -0.119 4.119 26 C -0.116 4.116 27 C -0.106 4.106 28 H 0.251 0.749 29 H 0.376 0.624 30 H 0.035 0.965 31 H 0.033 0.967 32 H 0.386 0.614 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.409 0.591 36 H 0.246 0.754 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.645 -30.124 0.135 30.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.095 0.905 9 N -0.383 5.383 10 C -0.004 4.004 11 C 0.047 3.953 12 H 0.118 0.882 13 O -0.369 6.369 14 C -0.022 4.022 15 N -0.358 5.358 16 C 0.382 3.618 17 O -0.435 6.435 18 C -0.454 4.454 19 S 0.461 5.539 20 C -0.246 4.246 21 N -0.204 5.204 22 C 0.015 3.985 23 C -0.073 4.073 24 C -0.146 4.146 25 C -0.156 4.156 26 C -0.153 4.153 27 C -0.145 4.145 28 H 0.060 0.940 29 H 0.209 0.791 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.235 0.765 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.246 0.754 36 H 0.262 0.738 37 H 0.125 0.875 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.944 -29.816 0.544 29.884 hybrid contribution 0.719 1.009 -0.264 1.267 sum -1.224 -28.807 0.279 28.834 Atomic orbital electron populations 1.69822 1.06623 1.26183 1.59140 1.25608 0.96427 1.01223 1.03579 0.85191 0.77171 0.79040 0.78216 1.20356 1.22184 1.20340 1.19604 0.91524 0.85318 1.41658 0.90547 1.42409 1.05739 1.00752 1.89411 1.21396 0.94147 0.85588 0.99275 1.22105 0.93594 0.91293 0.88279 0.88185 1.86558 1.38161 1.96201 1.16004 1.21951 0.91790 0.84615 1.03851 1.45710 1.11395 1.04820 1.73892 1.16894 0.86929 0.82003 0.75952 1.90695 1.16779 1.84009 1.52012 1.25436 0.98819 0.98234 1.22893 1.83990 0.97426 1.08580 1.63939 1.29504 1.00960 0.95638 0.98487 1.66088 0.98153 1.38312 1.17873 1.20749 0.96756 0.86902 0.94098 1.21074 0.89093 1.00159 0.97016 1.22353 0.99931 0.96014 0.96309 1.22493 0.98746 0.98455 0.95941 1.22306 1.00563 0.95550 0.96882 1.22076 1.00905 0.95915 0.95564 0.93980 0.79125 0.94725 0.94939 0.76523 0.90140 0.89967 0.75433 0.73822 0.87546 0.91570 0.92113 0.91129 0.90244 0.90582 0.91411 0.91780 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.22 13.06 21.65 0.28 -58.94 16 2 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.25 -13.80 9.99 84.04 0.84 -12.96 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -36.86 5.55 -343.45 -1.91 -38.77 16 10 C 0.12 4.55 5.90 86.38 0.51 5.06 16 11 C 0.11 3.09 3.09 30.60 0.09 3.19 16 12 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 13 O -0.56 -16.53 13.03 -148.98 -1.94 -18.47 16 14 C 0.10 2.49 5.34 86.38 0.46 2.95 16 15 N -0.71 -16.23 5.44 -467.09 -2.54 -18.77 16 16 C 0.60 15.37 7.78 86.45 0.67 16.04 16 17 O -0.55 -17.26 14.00 -4.28 -0.06 -17.32 16 18 C -0.33 -7.25 6.48 23.88 0.15 -7.09 16 19 S 0.20 2.87 22.35 -56.49 -1.26 1.61 16 20 C 0.05 0.59 12.22 130.60 1.60 2.19 16 21 N -0.49 -9.23 9.98 -190.40 -1.90 -11.13 16 22 C 0.15 3.41 5.14 42.09 0.22 3.63 16 23 C -0.05 -1.17 3.19 -10.82 -0.03 -1.20 16 24 C -0.11 -2.06 6.35 31.70 0.20 -1.86 16 25 C -0.12 -1.80 6.91 31.92 0.22 -1.58 16 26 C -0.12 -1.77 6.83 31.67 0.22 -1.55 16 27 C -0.11 -2.06 6.42 31.32 0.20 -1.86 16 28 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 29 H 0.38 20.31 7.67 -92.71 -0.71 19.60 16 30 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.39 9.18 9.05 -74.06 -0.67 8.51 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.41 8.39 7.53 -92.71 -0.70 7.69 16 36 H 0.25 0.76 8.06 -2.91 -0.02 0.74 16 37 H 0.11 2.87 4.96 -2.39 -0.01 2.86 16 38 H 0.07 1.30 7.56 -2.39 -0.02 1.28 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 44 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.05 1.14 7.59 -2.39 -0.02 1.12 16 Total: -1.00 -71.68 383.53 -2.52 -74.20 By element: Atomic # 1 Polarization: 39.66 SS G_CDS: -1.04 Total: 38.62 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 5.82 Total: 1.07 kcal Atomic # 7 Polarization: -121.54 SS G_CDS: -6.07 Total: -127.60 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -2.00 Total: -35.80 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -1.26 Total: 1.61 kcal Total: -71.68 -2.52 -74.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716093794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.198 kcal (2) G-P(sol) polarization free energy of solvation -71.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds