Wall clock time and date at job start Tue Mar 31 2020 22:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47344 * 270.00575 * 3 2 1 5 5 H 1.48507 * 109.46989 * 30.00148 * 3 2 1 6 6 H 1.48500 * 109.47285 * 150.00153 * 3 2 1 7 7 C 1.38812 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00090 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99699 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46900 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47164 * 60.00014 * 11 10 9 13 13 O 1.42903 * 109.47171 * 299.99748 * 11 10 9 14 14 C 1.53003 * 109.47376 * 180.02562 * 11 10 9 15 15 N 1.46494 * 109.47283 * 185.00021 * 14 11 10 16 16 C 1.34779 * 119.99921 * 179.97438 * 15 14 11 17 17 O 1.21685 * 119.99989 * 0.02562 * 16 15 14 18 18 C 1.46679 * 119.99941 * 179.97438 * 16 15 14 19 19 S 1.76222 * 126.13158 * 0.02892 * 18 16 15 20 20 C 1.70958 * 90.31556 * 179.97438 * 19 18 16 21 21 N 1.29438 * 110.38969 * 359.97438 * 20 19 18 22 22 C 1.30945 * 117.36152 * 359.70786 * 21 20 19 23 23 C 1.50698 * 122.90135 * 180.34533 * 22 21 20 24 24 C 1.54269 * 110.03220 * 58.10285 * 23 22 21 25 25 C 1.54967 * 104.16043 * 217.13550 * 24 23 22 26 26 C 1.54886 * 102.77405 * 37.88606 * 25 24 23 27 27 C 1.53876 * 110.03668 * 300.88438 * 23 22 21 28 28 H 0.97001 * 119.99921 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99991 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.47200 * 60.00130 * 10 9 7 31 31 H 1.08997 * 109.47487 * 300.00184 * 10 9 7 32 32 H 0.96700 * 114.00311 * 300.00378 * 13 11 10 33 33 H 1.09005 * 109.46682 * 304.99749 * 14 11 10 34 34 H 1.08999 * 109.47221 * 64.99915 * 14 11 10 35 35 H 0.96999 * 120.00388 * 359.97438 * 15 14 11 36 36 H 1.07991 * 124.80466 * 179.97438 * 20 19 18 37 37 H 1.09003 * 110.01801 * 179.49042 * 23 22 21 38 38 H 1.09000 * 110.48614 * 335.78318 * 24 23 22 39 39 H 1.09002 * 110.49045 * 98.42383 * 24 23 22 40 40 H 1.09003 * 110.71574 * 279.57625 * 25 24 23 41 41 H 1.08999 * 110.76404 * 156.22394 * 25 24 23 42 42 H 1.09004 * 110.48452 * 203.40732 * 26 25 24 43 43 H 1.08997 * 110.59915 * 80.82157 * 26 25 24 44 44 H 1.08995 * 110.03103 * 238.57239 * 27 23 22 45 45 H 1.09006 * 110.02575 * 359.95159 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 1 0.4368 -4.7613 -0.8918 13 8 0.2428 -4.7448 1.1651 14 6 1.8288 -6.1448 -0.0026 15 7 0.8814 -7.2555 -0.1234 16 6 1.3315 -8.5257 -0.1458 17 8 2.5248 -8.7499 -0.0654 18 6 0.3828 -9.6380 -0.2662 19 16 -1.3695 -9.5000 -0.3922 20 6 -1.5067 -11.2019 -0.4780 21 7 -0.3369 -11.7525 -0.4148 22 6 0.6976 -10.9569 -0.3079 23 6 2.1151 -11.4630 -0.2326 24 6 2.4422 -12.3064 -1.4822 25 6 3.3402 -13.4489 -0.9441 26 6 2.6992 -13.7706 0.4287 27 6 2.2789 -12.3933 0.9821 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6854 -3.7149 0.8878 31 1 2.6841 -3.7141 -0.8921 32 1 0.7352 -4.7907 1.9961 33 1 2.5209 -6.1643 -0.8445 34 1 2.3866 -6.2426 0.9287 35 1 -0.0699 -7.0769 -0.1871 36 1 -2.4376 -11.7413 -0.5718 37 1 2.8072 -10.6243 -0.1566 38 1 1.5293 -12.7120 -1.9184 39 1 2.9831 -11.7081 -2.2155 40 1 4.3674 -13.1061 -0.8200 41 1 3.2982 -14.3163 -1.6028 42 1 3.4279 -14.2407 1.0892 43 1 1.8281 -14.4137 0.3040 44 1 3.0509 -12.0066 1.6472 45 1 1.3332 -12.4781 1.5176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716093828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:32 Heat of formation + Delta-G solvation = -41.672831 kcal Electronic energy + Delta-G solvation = -26470.624028 eV Core-core repulsion = 22614.660043 eV Total energy + Delta-G solvation = -3855.963984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.92859 -39.47045 -37.66496 -37.58543 -34.54951 -34.04499 -31.75214 -31.30310 -29.65674 -28.87206 -28.31821 -25.93990 -25.22324 -22.95872 -21.75883 -21.48063 -21.05321 -20.83838 -19.67275 -18.18899 -17.42412 -17.18076 -16.29307 -16.19666 -16.02438 -15.67363 -15.30734 -15.14599 -14.67246 -14.49403 -14.31677 -14.02493 -13.72021 -13.51238 -13.42008 -13.04280 -12.72745 -12.65379 -12.38077 -11.92052 -11.70845 -11.32276 -11.26470 -11.10712 -11.07347 -10.97821 -10.84528 -10.79714 -10.68226 -10.25078 -10.19857 -9.91087 -9.89080 -9.80119 -9.54281 -9.31877 -9.12145 -8.93378 -6.97276 -5.78973 -3.08910 -0.08208 0.85613 1.23242 2.13657 2.88248 2.92526 3.41829 3.46919 3.48720 3.76609 4.41129 4.44191 4.48318 4.50061 4.58813 4.67324 4.78659 4.86724 4.93091 5.16879 5.26814 5.35650 5.37255 5.49056 5.51393 5.52185 5.54718 5.63522 5.69511 5.71595 5.81430 5.87846 5.94692 6.01658 6.09428 6.14952 6.19683 6.37197 6.46128 6.61992 7.16991 7.31689 7.65730 7.87014 7.93806 8.39095 9.50882 10.06969 10.42819 11.43265 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022388 B = 0.002044 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.391999 B =13694.007077 C =14598.604649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.127 3.873 11 C 0.088 3.912 12 H 0.105 0.895 13 O -0.552 6.552 14 C 0.090 3.910 15 N -0.713 5.713 16 C 0.596 3.404 17 O -0.523 6.523 18 C -0.295 4.295 19 S 0.166 5.834 20 C 0.034 3.966 21 N -0.468 5.468 22 C 0.157 3.843 23 C -0.047 4.047 24 C -0.111 4.111 25 C -0.122 4.122 26 C -0.120 4.120 27 C -0.108 4.108 28 H 0.256 0.744 29 H 0.389 0.611 30 H 0.024 0.976 31 H 0.029 0.971 32 H 0.374 0.626 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.403 0.597 36 H 0.206 0.794 37 H 0.129 0.871 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.381 -28.742 -0.652 28.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.371 5.371 10 C -0.002 4.002 11 C 0.028 3.972 12 H 0.123 0.877 13 O -0.357 6.357 14 C -0.034 4.034 15 N -0.364 5.364 16 C 0.382 3.618 17 O -0.402 6.402 18 C -0.419 4.419 19 S 0.421 5.579 20 C -0.262 4.262 21 N -0.181 5.181 22 C 0.019 3.981 23 C -0.068 4.068 24 C -0.149 4.149 25 C -0.160 4.160 26 C -0.158 4.158 27 C -0.146 4.146 28 H 0.065 0.935 29 H 0.224 0.776 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.222 0.778 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.238 0.762 36 H 0.222 0.778 37 H 0.147 0.853 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.662 -28.439 -1.071 28.508 hybrid contribution 0.669 0.685 0.361 1.023 sum -0.993 -27.754 -0.710 27.781 Atomic orbital electron populations 1.69677 1.05107 1.25706 1.57265 1.24769 0.95549 0.97760 1.02797 0.86174 0.78634 0.83719 0.77535 1.21672 1.21721 1.20740 1.19214 0.91000 0.84067 1.43262 0.91192 1.42224 1.06124 0.99331 1.89378 1.21183 0.93449 0.86553 0.98966 1.22405 0.93359 0.91665 0.89743 0.87748 1.86579 1.36986 1.96404 1.15705 1.22205 0.92189 0.85583 1.03420 1.45842 1.11259 1.05187 1.74146 1.16667 0.86941 0.81564 0.76656 1.90710 1.15352 1.83459 1.50701 1.25536 0.96909 0.98770 1.20643 1.84138 1.00604 1.08501 1.64638 1.28756 1.00342 0.95426 1.01664 1.66045 0.97702 1.38219 1.16163 1.20663 0.96347 0.86653 0.94484 1.21123 0.89116 1.00503 0.96056 1.22388 0.99835 0.96311 0.96363 1.22487 0.99014 0.97981 0.96524 1.22324 1.00150 0.96857 0.96469 1.22096 1.01384 0.94532 0.96627 0.93457 0.77632 0.95851 0.95318 0.77845 0.89960 0.90573 0.76203 0.77780 0.85326 0.91176 0.91563 0.91364 0.91613 0.91862 0.91533 0.91473 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.06 5.49 -59.91 -0.33 -18.39 16 10 C 0.13 2.39 5.92 -4.04 -0.02 2.37 16 11 C 0.09 1.30 3.09 -26.73 -0.08 1.22 16 12 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 13 O -0.55 -8.48 13.03 -35.23 -0.46 -8.94 16 14 C 0.09 1.13 5.31 -4.04 -0.02 1.11 16 15 N -0.71 -8.39 5.50 -61.62 -0.34 -8.73 16 16 C 0.60 7.69 7.78 -12.85 -0.10 7.59 16 17 O -0.52 -7.96 14.00 5.20 0.07 -7.89 16 18 C -0.29 -3.30 6.48 -37.10 -0.24 -3.54 16 19 S 0.17 1.32 22.35 -107.50 -2.40 -1.09 16 20 C 0.03 0.25 12.22 51.75 0.63 0.88 16 21 N -0.47 -4.73 9.98 -11.53 -0.12 -4.85 16 22 C 0.16 1.76 5.14 -83.89 -0.43 1.33 16 23 C -0.05 -0.52 3.19 -90.65 -0.29 -0.81 16 24 C -0.11 -1.07 6.35 -25.03 -0.16 -1.23 16 25 C -0.12 -0.99 6.91 -24.70 -0.17 -1.16 16 26 C -0.12 -0.99 6.83 -25.08 -0.17 -1.16 16 27 C -0.11 -1.05 6.42 -25.62 -0.16 -1.22 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.39 10.39 7.54 -40.82 -0.31 10.08 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.37 4.80 9.05 45.56 0.41 5.21 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.40 4.30 7.66 -40.82 -0.31 3.99 16 36 H 0.21 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.13 1.65 4.96 -51.93 -0.26 1.39 16 38 H 0.07 0.71 7.56 -51.93 -0.39 0.31 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.65 7.59 -51.93 -0.39 0.26 16 LS Contribution 383.53 15.07 5.78 5.78 Total: -1.00 -33.26 383.53 -9.43 -42.69 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -5.87 Total: 13.54 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.47 Total: -2.01 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -0.06 Total: -59.36 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.39 Total: -16.83 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.40 Total: -1.09 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.26 -9.43 -42.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716093828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.021 kcal (2) G-P(sol) polarization free energy of solvation -33.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds