Wall clock time and date at job start Tue Mar 31 2020 22:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47344 * 270.00575 * 3 2 1 5 5 H 1.48507 * 109.46989 * 30.00148 * 3 2 1 6 6 H 1.48500 * 109.47285 * 150.00153 * 3 2 1 7 7 C 1.38812 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00090 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99699 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46900 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47164 * 60.00014 * 11 10 9 13 13 O 1.42903 * 109.47171 * 299.99748 * 11 10 9 14 14 C 1.53003 * 109.47376 * 180.02562 * 11 10 9 15 15 N 1.46494 * 109.47283 * 185.00021 * 14 11 10 16 16 C 1.34779 * 119.99921 * 179.97438 * 15 14 11 17 17 O 1.21685 * 119.99989 * 0.02562 * 16 15 14 18 18 C 1.46679 * 119.99941 * 179.97438 * 16 15 14 19 19 S 1.76222 * 126.13158 * 0.02892 * 18 16 15 20 20 C 1.70958 * 90.31556 * 179.97438 * 19 18 16 21 21 N 1.29438 * 110.38969 * 359.97438 * 20 19 18 22 22 C 1.30945 * 117.36152 * 359.70786 * 21 20 19 23 23 C 1.50698 * 122.90135 * 180.34533 * 22 21 20 24 24 C 1.54269 * 110.03220 * 58.10285 * 23 22 21 25 25 C 1.54967 * 104.16043 * 217.13550 * 24 23 22 26 26 C 1.54886 * 102.77405 * 37.88606 * 25 24 23 27 27 C 1.53876 * 110.03668 * 300.88438 * 23 22 21 28 28 H 0.97001 * 119.99921 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99991 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.47200 * 60.00130 * 10 9 7 31 31 H 1.08997 * 109.47487 * 300.00184 * 10 9 7 32 32 H 0.96700 * 114.00311 * 300.00378 * 13 11 10 33 33 H 1.09005 * 109.46682 * 304.99749 * 14 11 10 34 34 H 1.08999 * 109.47221 * 64.99915 * 14 11 10 35 35 H 0.96999 * 120.00388 * 359.97438 * 15 14 11 36 36 H 1.07991 * 124.80466 * 179.97438 * 20 19 18 37 37 H 1.09003 * 110.01801 * 179.49042 * 23 22 21 38 38 H 1.09000 * 110.48614 * 335.78318 * 24 23 22 39 39 H 1.09002 * 110.49045 * 98.42383 * 24 23 22 40 40 H 1.09003 * 110.71574 * 279.57625 * 25 24 23 41 41 H 1.08999 * 110.76404 * 156.22394 * 25 24 23 42 42 H 1.09004 * 110.48452 * 203.40732 * 26 25 24 43 43 H 1.08997 * 110.59915 * 80.82157 * 26 25 24 44 44 H 1.08995 * 110.03103 * 238.57239 * 27 23 22 45 45 H 1.09006 * 110.02575 * 359.95159 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 1 0.4368 -4.7613 -0.8918 13 8 0.2428 -4.7448 1.1651 14 6 1.8288 -6.1448 -0.0026 15 7 0.8814 -7.2555 -0.1234 16 6 1.3315 -8.5257 -0.1458 17 8 2.5248 -8.7499 -0.0654 18 6 0.3828 -9.6380 -0.2662 19 16 -1.3695 -9.5000 -0.3922 20 6 -1.5067 -11.2019 -0.4780 21 7 -0.3369 -11.7525 -0.4148 22 6 0.6976 -10.9569 -0.3079 23 6 2.1151 -11.4630 -0.2326 24 6 2.4422 -12.3064 -1.4822 25 6 3.3402 -13.4489 -0.9441 26 6 2.6992 -13.7706 0.4287 27 6 2.2789 -12.3933 0.9821 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6854 -3.7149 0.8878 31 1 2.6841 -3.7141 -0.8921 32 1 0.7352 -4.7907 1.9961 33 1 2.5209 -6.1643 -0.8445 34 1 2.3866 -6.2426 0.9287 35 1 -0.0699 -7.0769 -0.1871 36 1 -2.4376 -11.7413 -0.5718 37 1 2.8072 -10.6243 -0.1566 38 1 1.5293 -12.7120 -1.9184 39 1 2.9831 -11.7081 -2.2155 40 1 4.3674 -13.1061 -0.8200 41 1 3.2982 -14.3163 -1.6028 42 1 3.4279 -14.2407 1.0892 43 1 1.8281 -14.4137 0.3040 44 1 3.0509 -12.0066 1.6472 45 1 1.3332 -12.4781 1.5176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716093828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:30 Heat of formation + Delta-G solvation = -67.050484 kcal Electronic energy + Delta-G solvation = -26471.724485 eV Core-core repulsion = 22614.660043 eV Total energy + Delta-G solvation = -3857.064442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -41.73781 -40.43470 -38.90960 -38.31947 -36.10103 -35.42563 -33.22378 -32.46194 -30.90172 -29.60269 -29.34670 -27.15624 -26.29253 -24.59752 -22.83460 -22.73492 -21.86284 -21.51753 -20.58434 -19.24395 -18.92479 -18.33004 -17.38767 -17.30386 -17.00727 -16.54312 -16.44587 -16.18068 -15.93299 -15.58080 -15.41381 -15.19338 -14.95771 -14.76758 -14.24413 -14.21570 -14.12794 -13.87369 -13.34346 -13.28073 -12.95903 -12.75737 -12.45425 -12.17168 -12.02244 -12.00806 -11.96645 -11.89753 -11.82109 -11.81246 -11.46374 -11.08776 -11.00537 -10.95581 -10.67562 -10.61189 -10.25554 -9.85138 -9.01359 -7.95119 -5.24578 -0.81000 0.17047 0.55022 1.35349 1.47823 1.49393 1.57847 1.90623 2.01934 2.55723 3.10675 3.35514 3.43794 3.53468 3.64466 3.70482 3.76672 3.89301 3.99822 4.13422 4.17750 4.29656 4.39559 4.52998 4.58988 4.62677 4.63185 4.69108 4.74392 4.83046 4.92810 4.92945 5.05694 5.06705 5.14533 5.21298 5.24918 5.29272 5.46594 5.48231 5.53189 6.24561 6.26566 6.57599 6.76890 6.96602 7.33373 8.08604 8.31742 9.27981 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022388 B = 0.002044 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.391999 B =13694.007077 C =14598.604649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.076 4.076 3 Si 0.975 3.025 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.248 4.248 8 H 0.077 0.923 9 N -0.740 5.740 10 C 0.123 3.877 11 C 0.107 3.893 12 H 0.102 0.898 13 O -0.563 6.563 14 C 0.103 3.897 15 N -0.707 5.707 16 C 0.596 3.404 17 O -0.554 6.554 18 C -0.330 4.330 19 S 0.204 5.796 20 C 0.049 3.951 21 N -0.491 5.491 22 C 0.154 3.846 23 C -0.053 4.053 24 C -0.108 4.108 25 C -0.119 4.119 26 C -0.116 4.116 27 C -0.106 4.106 28 H 0.251 0.749 29 H 0.377 0.623 30 H 0.032 0.968 31 H 0.035 0.965 32 H 0.385 0.615 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.409 0.591 36 H 0.246 0.754 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.589 -30.128 -0.697 30.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.379 4.379 8 H 0.095 0.905 9 N -0.383 5.383 10 C -0.005 4.005 11 C 0.047 3.953 12 H 0.119 0.881 13 O -0.369 6.369 14 C -0.022 4.022 15 N -0.358 5.358 16 C 0.382 3.618 17 O -0.435 6.435 18 C -0.454 4.454 19 S 0.460 5.540 20 C -0.246 4.246 21 N -0.204 5.204 22 C 0.015 3.985 23 C -0.073 4.073 24 C -0.146 4.146 25 C -0.156 4.156 26 C -0.153 4.153 27 C -0.144 4.144 28 H 0.060 0.940 29 H 0.210 0.790 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.234 0.766 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.245 0.755 36 H 0.262 0.738 37 H 0.125 0.875 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.853 -29.850 -1.110 29.928 hybrid contribution 0.685 1.029 0.377 1.292 sum -1.168 -28.821 -0.733 28.854 Atomic orbital electron populations 1.69833 1.06618 1.26081 1.59229 1.25601 0.96424 1.01201 1.03638 0.85127 0.77687 0.79402 0.77436 1.21383 1.22227 1.19397 1.19638 0.91521 0.85307 1.41478 0.90546 1.42403 1.05798 1.00704 1.89375 1.21388 0.94160 0.85636 0.99294 1.22111 0.92344 0.91201 0.89639 0.88061 1.86557 1.37583 1.96397 1.16402 1.21966 0.91875 0.84629 1.03705 1.45726 1.11412 1.04766 1.73937 1.16894 0.86907 0.82004 0.75971 1.90696 1.16726 1.83955 1.52111 1.25435 0.98836 0.98223 1.22879 1.83986 0.97565 1.08590 1.63843 1.29503 1.00896 0.95548 0.98611 1.66091 0.98207 1.38349 1.17777 1.20750 0.96784 0.86922 0.94047 1.21076 0.89051 1.00106 0.97110 1.22355 0.99898 0.96613 0.95770 1.22491 0.98718 0.97805 0.96621 1.22304 1.00507 0.95871 0.96618 1.22073 1.00907 0.95309 0.96143 0.94001 0.79040 0.94972 0.94728 0.76554 0.89897 0.90193 0.75482 0.73822 0.87545 0.91572 0.92136 0.91129 0.90254 0.90568 0.91414 0.91761 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.21 13.06 21.65 0.28 -58.93 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.25 -13.69 9.99 84.03 0.84 -12.85 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -36.77 5.49 -343.46 -1.89 -38.65 16 10 C 0.12 4.52 5.92 86.38 0.51 5.03 16 11 C 0.11 3.08 3.09 30.60 0.09 3.17 16 12 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 13 O -0.56 -16.82 13.03 -148.98 -1.94 -18.77 16 14 C 0.10 2.49 5.31 86.38 0.46 2.95 16 15 N -0.71 -16.21 5.50 -467.09 -2.57 -18.78 16 16 C 0.60 15.36 7.78 86.45 0.67 16.03 16 17 O -0.55 -17.25 14.00 -4.30 -0.06 -17.31 16 18 C -0.33 -7.24 6.48 23.88 0.15 -7.09 16 19 S 0.20 2.86 22.35 -56.49 -1.26 1.59 16 20 C 0.05 0.60 12.22 130.60 1.60 2.19 16 21 N -0.49 -9.22 9.98 -190.40 -1.90 -11.12 16 22 C 0.15 3.41 5.14 42.09 0.22 3.62 16 23 C -0.05 -1.17 3.19 -10.81 -0.03 -1.20 16 24 C -0.11 -2.07 6.35 31.70 0.20 -1.87 16 25 C -0.12 -1.80 6.91 31.91 0.22 -1.58 16 26 C -0.12 -1.76 6.83 31.67 0.22 -1.54 16 27 C -0.11 -2.05 6.42 31.32 0.20 -1.85 16 28 H 0.25 14.90 8.31 -92.71 -0.77 14.12 16 29 H 0.38 20.33 7.54 -92.71 -0.70 19.63 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.39 9.49 9.05 -74.06 -0.67 8.82 16 33 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.41 8.32 7.66 -92.71 -0.71 7.61 16 36 H 0.25 0.75 8.06 -2.92 -0.02 0.73 16 37 H 0.11 2.87 4.96 -2.39 -0.01 2.86 16 38 H 0.07 1.31 7.56 -2.39 -0.02 1.29 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 0.96 8.14 -2.38 -0.02 0.95 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.05 1.14 7.59 -2.38 -0.02 1.12 16 Total: -1.00 -71.73 383.53 -2.53 -74.26 By element: Atomic # 1 Polarization: 39.71 SS G_CDS: -1.04 Total: 38.67 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 5.82 Total: 1.12 kcal Atomic # 7 Polarization: -121.41 SS G_CDS: -6.07 Total: -127.49 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -2.00 Total: -36.08 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.26 Total: 1.59 kcal Total: -71.73 -2.53 -74.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716093828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.207 kcal (2) G-P(sol) polarization free energy of solvation -71.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds