Wall clock time and date at job start Tue Mar 31 2020 23:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.70447 * 124.59137 * 2 1 4 4 C 1.75503 * 92.44528 * 180.02562 * 3 2 1 5 5 C 1.32767 * 110.57521 * 359.73944 * 4 3 2 6 6 C 1.36013 * 124.59190 * 180.02562 * 2 1 3 7 7 C 1.47187 * 123.46101 * 359.97006 * 6 2 1 8 8 O 1.21636 * 119.99771 * 0.02562 * 7 6 2 9 9 N 1.34780 * 119.99657 * 179.72481 * 7 6 2 10 10 C 1.46497 * 119.99629 * 180.27966 * 9 7 6 11 11 H 1.09008 * 109.47431 * 322.98905 * 10 9 7 12 12 C 1.52995 * 109.47575 * 82.98901 * 10 9 7 13 13 C 1.53003 * 109.46906 * 202.99356 * 10 9 7 14 14 N 1.46894 * 109.47315 * 55.16234 * 13 10 9 15 15 C 1.46902 * 111.00233 * 198.93059 * 14 13 10 16 16 C 1.46901 * 110.99978 * 74.97548 * 14 13 10 17 17 C 1.50703 * 109.47098 * 189.99926 * 16 14 13 18 18 O 1.21300 * 119.99756 * 0.02562 * 17 16 14 19 19 N 1.34775 * 120.00251 * 179.97438 * 17 16 14 20 20 C 1.37096 * 120.00027 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00057 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99885 * 179.97438 * 20 19 17 23 23 N 1.31417 * 120.00169 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00159 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47040 * 90.00261 * 24 22 20 26 26 H 1.48493 * 109.47147 * 210.00363 * 24 22 20 27 27 H 1.48501 * 109.46863 * 330.00449 * 24 22 20 28 28 H 1.09004 * 109.46936 * 269.99388 * 1 2 3 29 29 H 1.08999 * 109.47344 * 29.99439 * 1 2 3 30 30 H 1.08999 * 109.47235 * 150.00001 * 1 2 3 31 31 H 1.08003 * 124.70881 * 179.97438 * 4 3 2 32 32 H 1.08005 * 123.45763 * 180.24647 * 5 4 3 33 33 H 0.96999 * 119.99930 * 0.28205 * 9 7 6 34 34 H 1.09008 * 109.46822 * 60.00130 * 12 10 9 35 35 H 1.09004 * 109.47795 * 179.97438 * 12 10 9 36 36 H 1.08996 * 109.47567 * 300.00431 * 12 10 9 37 37 H 1.09004 * 109.46855 * 175.16399 * 13 10 9 38 38 H 1.09000 * 109.47027 * 295.15739 * 13 10 9 39 39 H 1.09000 * 109.47141 * 54.11714 * 15 14 13 40 40 H 1.08999 * 109.47369 * 174.11947 * 15 14 13 41 41 H 1.09008 * 109.46733 * 294.12371 * 15 14 13 42 42 H 1.08998 * 109.47477 * 309.99667 * 16 14 13 43 43 H 1.08995 * 109.47426 * 70.00438 * 16 14 13 44 44 H 0.97004 * 119.99739 * 0.02562 * 19 17 16 45 45 H 0.96995 * 119.99790 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4032 0.0000 4 6 3.9606 0.4693 -0.0008 5 6 3.6943 -0.8313 0.0046 6 6 2.2792 -1.1197 -0.0005 7 6 1.7290 -2.4849 -0.0005 8 8 0.5247 -2.6552 -0.0004 9 7 2.5599 -3.5461 -0.0066 10 6 2.0123 -4.9049 -0.0128 11 1 1.1159 -4.9383 0.6067 12 6 1.6569 -5.3052 -1.4460 13 6 3.0540 -5.8770 0.5448 14 7 3.4807 -5.4268 1.8764 15 6 4.7616 -6.0389 2.2537 16 6 2.4473 -5.7056 2.8826 17 6 2.8062 -5.0185 4.1750 18 8 3.8226 -4.3608 4.2502 19 7 1.9973 -5.1340 5.2468 20 6 2.3241 -4.5093 6.4226 21 1 3.2294 -3.9245 6.4899 22 6 1.4898 -4.6279 7.5275 23 7 0.3879 -5.3392 7.4455 24 14 1.9347 -3.7763 9.1294 25 1 1.3481 -2.4121 9.1443 26 1 1.3976 -4.5585 10.2716 27 1 3.4121 -3.6811 9.2458 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 4.9537 0.8939 -0.0014 32 1 4.4576 -1.5954 0.0091 33 1 3.5203 -3.4102 -0.0069 34 1 2.5532 -5.2718 -2.0654 35 1 1.2499 -6.3163 -1.4507 36 1 0.9148 -4.6126 -1.8433 37 1 2.6176 -6.8730 0.6206 38 1 3.9158 -5.9078 -0.1218 39 1 5.4998 -5.8460 1.4753 40 1 5.1058 -5.6105 3.1950 41 1 4.6297 -7.1147 2.3708 42 1 1.4857 -5.3341 2.5285 43 1 2.3826 -6.7809 3.0487 44 1 1.1843 -5.6596 5.1864 45 1 -0.1942 -5.4223 8.2169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716477777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:51 Heat of formation + Delta-G solvation = -36.914710 kcal Electronic energy + Delta-G solvation = -27575.029340 eV Core-core repulsion = 23719.271683 eV Total energy + Delta-G solvation = -3855.757657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.98993 -38.65033 -37.31363 -36.50004 -34.71021 -33.73995 -31.96629 -31.20913 -31.03858 -28.03162 -27.09815 -26.90053 -24.68029 -23.90859 -22.43204 -21.63126 -20.60225 -19.38219 -19.07891 -17.81591 -17.29870 -16.65052 -16.21662 -15.90559 -15.29689 -14.95294 -14.72228 -14.63214 -14.18575 -13.96302 -13.69349 -13.58259 -13.48484 -13.37270 -13.30703 -12.83879 -12.62827 -12.38477 -12.12014 -12.09293 -12.00744 -11.78493 -11.60403 -11.46158 -11.39518 -11.20698 -11.09889 -11.01220 -10.60782 -10.37311 -10.18883 -9.56901 -9.44351 -8.95025 -8.77708 -8.44550 -8.43097 -7.95445 -7.84682 -6.38217 -3.78873 0.80646 1.45458 1.85308 2.01874 3.19948 3.28178 3.33525 3.38886 3.55811 3.93918 4.00868 4.25773 4.64862 4.73883 4.89116 5.07323 5.11809 5.18660 5.24159 5.29898 5.33070 5.43663 5.51613 5.56938 5.64107 5.66087 5.68165 5.75790 5.87586 5.92258 5.94748 6.00433 6.06362 6.13966 6.23578 6.27012 6.31496 6.51991 6.69193 7.24393 7.35546 7.58220 7.74043 8.09669 8.44601 8.65456 9.21573 9.58330 10.10153 10.79655 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008933 B = 0.003539 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.564424 B = 7909.478503 C = 9575.523318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.138 4.138 3 S 0.164 5.836 4 C -0.237 4.237 5 C -0.098 4.098 6 C -0.171 4.171 7 C 0.583 3.417 8 O -0.545 6.545 9 N -0.698 5.698 10 C 0.148 3.852 11 H 0.087 0.913 12 C -0.161 4.161 13 C 0.042 3.958 14 N -0.515 5.515 15 C 0.023 3.977 16 C 0.044 3.956 17 C 0.446 3.554 18 O -0.578 6.578 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.167 0.833 32 H 0.148 0.852 33 H 0.402 0.598 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.014 0.986 42 H 0.087 0.913 43 H 0.047 0.953 44 H 0.391 0.609 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.952 5.050 -19.418 20.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.259 4.259 3 S 0.430 5.570 4 C -0.372 4.372 5 C -0.127 4.127 6 C -0.188 4.188 7 C 0.370 3.630 8 O -0.424 6.424 9 N -0.348 5.348 10 C 0.042 3.958 11 H 0.105 0.895 12 C -0.220 4.220 13 C -0.087 4.087 14 N -0.239 5.239 15 C -0.125 4.125 16 C -0.087 4.087 17 C 0.231 3.769 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.195 1.195 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.123 0.877 31 H 0.184 0.816 32 H 0.166 0.834 33 H 0.237 0.763 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.116 0.884 41 H 0.033 0.967 42 H 0.105 0.895 43 H 0.065 0.935 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.438 7.351 -19.219 20.862 hybrid contribution 0.410 -2.345 0.997 2.581 sum 3.848 5.006 -18.222 19.285 Atomic orbital electron populations 1.20637 0.86820 1.04049 1.03801 1.24505 1.01772 0.96742 1.02837 1.82974 0.95368 1.07830 1.70872 1.25338 1.02080 0.97221 1.12540 1.21223 0.94635 0.96346 1.00468 1.20156 0.92714 0.93835 1.12061 1.17474 0.86049 0.83712 0.75788 1.90706 1.14514 1.86113 1.51102 1.45582 1.10015 1.04929 1.74299 1.20940 0.97290 0.81242 0.96307 0.89489 1.22147 1.01843 1.01771 0.96196 1.22496 0.98392 0.96213 0.91555 1.61549 1.03154 1.58909 1.00271 1.22554 0.90442 0.95828 1.03658 1.21924 0.95679 0.98351 0.92743 1.19695 0.86223 0.86249 0.84691 1.90467 1.27160 1.44593 1.84011 1.41861 1.22456 1.45871 1.09911 1.19675 1.08116 1.27662 0.87259 0.87989 1.25250 0.95449 0.97480 0.99747 1.69616 1.12581 1.40244 1.31880 0.85877 0.78869 0.78947 0.80705 1.20406 1.20950 1.19457 0.90077 0.91845 0.87745 0.81554 0.83414 0.76293 0.92555 0.91706 0.91777 0.93289 0.90358 0.92385 0.88440 0.96707 0.89520 0.93488 0.77545 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.60 36.00 0.35 -0.83 16 2 C -0.14 -1.82 6.34 -35.11 -0.22 -2.05 16 3 S 0.16 1.72 22.97 -107.50 -2.47 -0.75 16 4 C -0.24 -2.47 11.12 28.86 0.32 -2.15 16 5 C -0.10 -1.15 9.90 -39.02 -0.39 -1.54 16 6 C -0.17 -2.42 5.98 -104.63 -0.63 -3.04 16 7 C 0.58 9.06 7.73 -12.62 -0.10 8.96 16 8 O -0.54 -9.75 13.74 5.25 0.07 -9.68 16 9 N -0.70 -9.27 4.80 -54.95 -0.26 -9.53 16 10 C 0.15 1.84 2.55 -67.93 -0.17 1.67 16 11 H 0.09 1.30 6.41 -51.92 -0.33 0.97 16 12 C -0.16 -1.62 9.46 37.15 0.35 -1.27 16 13 C 0.04 0.50 4.54 -3.83 -0.02 0.48 16 14 N -0.52 -8.08 4.16 -244.37 -1.02 -9.09 16 15 C 0.02 0.35 9.17 60.07 0.55 0.90 16 16 C 0.04 0.81 5.28 -4.97 -0.03 0.78 16 17 C 0.45 10.65 7.52 -10.98 -0.08 10.57 16 18 O -0.58 -15.44 13.88 5.54 0.08 -15.37 16 19 N -0.56 -14.63 5.29 -10.96 -0.06 -14.68 16 20 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -25.02 13.05 55.50 0.72 -24.29 16 24 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.10 1.45 5.94 -51.93 -0.31 1.14 16 31 H 0.17 1.29 8.06 -52.48 -0.42 0.87 16 32 H 0.15 1.47 7.10 -52.48 -0.37 1.10 16 33 H 0.40 4.77 7.13 -40.82 -0.29 4.48 16 34 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 37 H 0.05 0.53 8.01 -51.93 -0.42 0.12 16 38 H 0.08 0.77 7.81 -51.93 -0.41 0.36 16 39 H 0.06 0.72 7.94 -51.93 -0.41 0.31 16 40 H 0.10 1.85 5.92 -51.93 -0.31 1.54 16 41 H 0.01 0.20 8.13 -51.92 -0.42 -0.22 16 42 H 0.09 1.54 6.66 -51.93 -0.35 1.20 16 43 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 44 H 0.39 9.81 7.90 -40.82 -0.32 9.49 16 45 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 384.41 15.07 5.79 5.79 Total: -1.00 -33.15 384.41 -8.87 -42.03 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -6.40 Total: 14.77 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -0.30 Total: 4.42 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.61 Total: -57.60 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: 0.15 Total: -25.04 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.47 Total: -0.75 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.15 -8.87 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716477777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.112 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds