Wall clock time and date at job start Tue Mar 31 2020 23:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.70447 * 124.59137 * 2 1 4 4 C 1.75503 * 92.44528 * 180.02562 * 3 2 1 5 5 C 1.32767 * 110.57521 * 359.73944 * 4 3 2 6 6 C 1.36013 * 124.59190 * 180.02562 * 2 1 3 7 7 C 1.47187 * 123.46101 * 359.97006 * 6 2 1 8 8 O 1.21636 * 119.99771 * 0.02562 * 7 6 2 9 9 N 1.34780 * 119.99657 * 179.72481 * 7 6 2 10 10 C 1.46497 * 119.99629 * 180.27966 * 9 7 6 11 11 H 1.09008 * 109.47431 * 322.98905 * 10 9 7 12 12 C 1.52995 * 109.47575 * 82.98901 * 10 9 7 13 13 C 1.53003 * 109.46906 * 202.99356 * 10 9 7 14 14 N 1.46894 * 109.47315 * 55.16234 * 13 10 9 15 15 C 1.46902 * 111.00233 * 198.93059 * 14 13 10 16 16 C 1.46901 * 110.99978 * 74.97548 * 14 13 10 17 17 C 1.50703 * 109.47098 * 189.99926 * 16 14 13 18 18 O 1.21300 * 119.99756 * 0.02562 * 17 16 14 19 19 N 1.34775 * 120.00251 * 179.97438 * 17 16 14 20 20 C 1.37096 * 120.00027 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00057 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99885 * 179.97438 * 20 19 17 23 23 N 1.31417 * 120.00169 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00159 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47040 * 90.00261 * 24 22 20 26 26 H 1.48493 * 109.47147 * 210.00363 * 24 22 20 27 27 H 1.48501 * 109.46863 * 330.00449 * 24 22 20 28 28 H 1.09004 * 109.46936 * 269.99388 * 1 2 3 29 29 H 1.08999 * 109.47344 * 29.99439 * 1 2 3 30 30 H 1.08999 * 109.47235 * 150.00001 * 1 2 3 31 31 H 1.08003 * 124.70881 * 179.97438 * 4 3 2 32 32 H 1.08005 * 123.45763 * 180.24647 * 5 4 3 33 33 H 0.96999 * 119.99930 * 0.28205 * 9 7 6 34 34 H 1.09008 * 109.46822 * 60.00130 * 12 10 9 35 35 H 1.09004 * 109.47795 * 179.97438 * 12 10 9 36 36 H 1.08996 * 109.47567 * 300.00431 * 12 10 9 37 37 H 1.09004 * 109.46855 * 175.16399 * 13 10 9 38 38 H 1.09000 * 109.47027 * 295.15739 * 13 10 9 39 39 H 1.09000 * 109.47141 * 54.11714 * 15 14 13 40 40 H 1.08999 * 109.47369 * 174.11947 * 15 14 13 41 41 H 1.09008 * 109.46733 * 294.12371 * 15 14 13 42 42 H 1.08998 * 109.47477 * 309.99667 * 16 14 13 43 43 H 1.08995 * 109.47426 * 70.00438 * 16 14 13 44 44 H 0.97004 * 119.99739 * 0.02562 * 19 17 16 45 45 H 0.96995 * 119.99790 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4032 0.0000 4 6 3.9606 0.4693 -0.0008 5 6 3.6943 -0.8313 0.0046 6 6 2.2792 -1.1197 -0.0005 7 6 1.7290 -2.4849 -0.0005 8 8 0.5247 -2.6552 -0.0004 9 7 2.5599 -3.5461 -0.0066 10 6 2.0123 -4.9049 -0.0128 11 1 1.1159 -4.9383 0.6067 12 6 1.6569 -5.3052 -1.4460 13 6 3.0540 -5.8770 0.5448 14 7 3.4807 -5.4268 1.8764 15 6 4.7616 -6.0389 2.2537 16 6 2.4473 -5.7056 2.8826 17 6 2.8062 -5.0185 4.1750 18 8 3.8226 -4.3608 4.2502 19 7 1.9973 -5.1340 5.2468 20 6 2.3241 -4.5093 6.4226 21 1 3.2294 -3.9245 6.4899 22 6 1.4898 -4.6279 7.5275 23 7 0.3879 -5.3392 7.4455 24 14 1.9347 -3.7763 9.1294 25 1 1.3481 -2.4121 9.1443 26 1 1.3976 -4.5585 10.2716 27 1 3.4121 -3.6811 9.2458 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 4.9537 0.8939 -0.0014 32 1 4.4576 -1.5954 0.0091 33 1 3.5203 -3.4102 -0.0069 34 1 2.5532 -5.2718 -2.0654 35 1 1.2499 -6.3163 -1.4507 36 1 0.9148 -4.6126 -1.8433 37 1 2.6176 -6.8730 0.6206 38 1 3.9158 -5.9078 -0.1218 39 1 5.4998 -5.8460 1.4753 40 1 5.1058 -5.6105 3.1950 41 1 4.6297 -7.1147 2.3708 42 1 1.4857 -5.3341 2.5285 43 1 2.3826 -6.7809 3.0487 44 1 1.1843 -5.6596 5.1864 45 1 -0.1942 -5.4223 8.2169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716477777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:50 Heat of formation + Delta-G solvation = -60.856839 kcal Electronic energy + Delta-G solvation = -27576.067548 eV Core-core repulsion = 23719.271683 eV Total energy + Delta-G solvation = -3856.795865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10589 -40.32257 -38.55188 -37.66221 -36.13524 -35.55637 -33.27952 -32.90895 -32.06683 -29.59429 -28.05146 -27.93440 -26.60906 -24.91326 -23.63637 -22.64627 -21.75537 -20.86872 -20.39857 -19.85315 -18.25212 -17.93414 -17.55855 -17.06583 -16.65226 -16.58317 -16.11003 -15.97191 -15.59279 -15.36144 -15.06867 -15.04322 -14.56419 -14.50539 -14.34319 -14.04494 -13.70672 -13.58245 -13.44202 -13.33554 -13.07164 -13.03068 -12.90280 -12.82236 -12.62711 -12.54015 -12.46178 -12.37593 -12.13164 -11.97644 -11.70533 -11.44612 -10.71887 -10.26953 -10.03669 -10.00078 -9.69362 -9.33232 -9.19136 -8.46854 -5.95620 -0.16341 0.57771 0.97309 1.06919 1.36531 1.39491 1.52578 2.05330 2.26545 2.34345 2.47733 2.80552 3.19911 3.37526 3.75346 3.81454 3.93643 4.12750 4.19468 4.21381 4.34097 4.39355 4.45428 4.51184 4.58528 4.62047 4.65727 4.66789 4.72368 4.78358 4.83437 4.96470 5.07546 5.09495 5.23981 5.26636 5.31105 5.33499 5.39943 5.63721 5.87941 6.06924 6.22691 6.59894 6.67499 7.12547 7.34356 7.56003 8.11629 8.70921 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008933 B = 0.003539 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.564424 B = 7909.478503 C = 9575.523318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.166 4.166 3 S 0.211 5.789 4 C -0.233 4.233 5 C -0.113 4.113 6 C -0.197 4.197 7 C 0.572 3.428 8 O -0.581 6.581 9 N -0.691 5.691 10 C 0.145 3.855 11 H 0.056 0.944 12 C -0.150 4.150 13 C 0.049 3.951 14 N -0.530 5.530 15 C 0.028 3.972 16 C 0.058 3.942 17 C 0.443 3.557 18 O -0.608 6.608 19 N -0.578 5.578 20 C -0.330 4.330 21 H 0.080 0.920 22 C -0.015 4.015 23 N -0.923 5.923 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.270 1.270 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.197 0.803 32 H 0.163 0.837 33 H 0.409 0.591 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.042 0.958 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.028 0.972 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.393 0.607 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.311 5.134 -20.489 21.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.287 4.287 3 S 0.477 5.523 4 C -0.368 4.368 5 C -0.142 4.142 6 C -0.214 4.214 7 C 0.359 3.641 8 O -0.463 6.463 9 N -0.340 5.340 10 C 0.040 3.960 11 H 0.074 0.926 12 C -0.209 4.209 13 C -0.078 4.078 14 N -0.254 5.254 15 C -0.119 4.119 16 C -0.073 4.073 17 C 0.230 3.770 18 O -0.494 6.494 19 N -0.215 5.215 20 C -0.460 4.460 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.564 5.564 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.194 1.194 27 H -0.195 1.195 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.214 0.786 32 H 0.180 0.820 33 H 0.246 0.754 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.226 0.774 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.816 7.413 -20.317 22.157 hybrid contribution 0.028 -2.328 1.261 2.648 sum 4.844 5.084 -19.056 20.309 Atomic orbital electron populations 1.20563 0.86995 1.04359 1.03073 1.24799 1.02395 0.98209 1.03266 1.82755 0.94440 1.05789 1.69345 1.25778 1.03462 0.96837 1.10692 1.21356 0.93781 0.97511 1.01507 1.20342 0.94180 0.93364 1.13513 1.17865 0.85876 0.84853 0.75477 1.90678 1.15953 1.86750 1.52959 1.45594 1.10213 1.04946 1.73292 1.21020 0.96444 0.81131 0.97432 0.92610 1.22046 1.02243 1.02096 0.94491 1.22567 0.99381 0.96452 0.89449 1.61466 1.02703 1.60068 1.01188 1.22445 0.90740 0.96113 1.02649 1.21723 0.96504 0.98624 0.90440 1.20729 0.85082 0.85258 0.85887 1.90445 1.28344 1.45746 1.84883 1.41965 1.22995 1.46401 1.10172 1.19648 1.08202 1.29089 0.89055 0.90251 1.26052 0.95103 0.97754 1.02497 1.69685 1.13071 1.40695 1.32984 0.84937 0.78510 0.78079 0.76877 1.19872 1.19444 1.19484 0.91284 0.89256 0.89766 0.78584 0.81984 0.75410 0.90494 0.89898 0.93843 0.91410 0.87215 0.89185 0.92810 0.95383 0.89317 0.91425 0.77366 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.36 9.60 71.24 0.68 -1.68 16 2 C -0.17 -4.41 6.34 25.17 0.16 -4.25 16 3 S 0.21 4.09 22.97 -56.49 -1.30 2.80 16 4 C -0.23 -4.36 11.12 66.64 0.74 -3.62 16 5 C -0.11 -2.55 9.90 22.67 0.22 -2.33 16 6 C -0.20 -5.62 5.98 -19.87 -0.12 -5.74 16 7 C 0.57 18.33 7.73 86.59 0.67 19.00 16 8 O -0.58 -22.00 13.74 -4.15 -0.06 -22.06 16 9 N -0.69 -18.10 4.80 -446.02 -2.14 -20.25 16 10 C 0.14 3.46 2.55 44.99 0.11 3.58 16 11 H 0.06 1.70 6.41 -2.38 -0.02 1.68 16 12 C -0.15 -2.77 9.46 71.98 0.68 -2.09 16 13 C 0.05 1.01 4.54 86.31 0.39 1.41 16 14 N -0.53 -15.83 4.16 -927.04 -3.86 -19.68 16 15 C 0.03 0.80 9.17 127.69 1.17 1.97 16 16 C 0.06 2.10 5.28 85.56 0.45 2.55 16 17 C 0.44 21.66 7.52 87.66 0.66 22.32 16 18 O -0.61 -33.47 13.88 -3.09 -0.04 -33.52 16 19 N -0.58 -30.87 5.29 -306.98 -1.62 -32.49 16 20 C -0.33 -19.27 9.68 84.04 0.81 -18.46 16 21 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 22 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 23 N -0.92 -51.51 13.05 21.66 0.28 -51.23 16 24 Si 0.99 44.03 29.55 68.60 2.03 46.06 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 28 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.08 2.51 5.94 -2.39 -0.01 2.50 16 31 H 0.20 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.16 3.00 7.10 -2.91 -0.02 2.98 16 33 H 0.41 9.25 7.13 -92.71 -0.66 8.59 16 34 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.04 1.00 8.13 -2.39 -0.02 0.98 16 37 H 0.07 1.22 8.01 -2.38 -0.02 1.20 16 38 H 0.11 1.65 7.81 -2.39 -0.02 1.63 16 39 H 0.09 1.96 7.94 -2.39 -0.02 1.94 16 40 H 0.05 2.04 5.92 -2.39 -0.01 2.02 16 41 H 0.03 0.72 8.13 -2.38 -0.02 0.70 16 42 H 0.09 3.18 6.66 -2.39 -0.02 3.17 16 43 H 0.07 2.16 8.11 -2.39 -0.02 2.14 16 44 H 0.39 20.29 7.90 -92.71 -0.73 19.56 16 45 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -75.11 384.41 0.04 -75.07 By element: Atomic # 1 Polarization: 43.33 SS G_CDS: -0.36 Total: 42.97 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 7.11 Total: 12.34 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -7.34 Total: -123.65 kcal Atomic # 8 Polarization: -55.48 SS G_CDS: -0.10 Total: -55.58 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.30 Total: 2.80 kcal Total: -75.11 0.04 -75.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716477777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.212 kcal (2) G-P(sol) polarization free energy of solvation -75.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds