Wall clock time and date at job start Tue Mar 31 2020 23:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70445 * 124.58992 * 2 1 4 4 C 1.75498 * 92.44506 * 180.02562 * 3 2 1 5 5 C 1.32776 * 110.57797 * 359.73646 * 4 3 2 6 6 C 1.36007 * 124.59291 * 180.02562 * 2 1 3 7 7 C 1.47191 * 123.46037 * 359.94063 * 6 2 1 8 8 O 1.21633 * 119.99952 * 0.02562 * 7 6 2 9 9 N 1.34772 * 120.00153 * 179.97438 * 7 6 2 10 10 C 1.46499 * 120.00603 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46936 * 34.11801 * 10 9 7 12 12 C 1.53005 * 109.46729 * 274.12857 * 10 9 7 13 13 C 1.52988 * 109.47622 * 154.12506 * 10 9 7 14 14 N 1.46904 * 109.47312 * 304.36257 * 13 10 9 15 15 C 1.46896 * 111.00421 * 164.38168 * 14 13 10 16 16 C 1.46894 * 111.00161 * 288.34057 * 14 13 10 17 17 C 1.50702 * 109.47299 * 169.99625 * 16 14 13 18 18 O 1.21290 * 119.99742 * 359.97438 * 17 16 14 19 19 N 1.34777 * 119.99996 * 180.02562 * 17 16 14 20 20 C 1.37093 * 119.99807 * 180.02562 * 19 17 16 21 21 H 1.07992 * 120.00383 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99965 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00096 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 120.00086 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46794 * 89.99844 * 24 22 20 26 26 H 1.48499 * 109.47232 * 210.00377 * 24 22 20 27 27 H 1.48504 * 109.46901 * 330.00462 * 24 22 20 28 28 H 1.09000 * 109.47571 * 269.96009 * 1 2 3 29 29 H 1.08999 * 109.47245 * 29.96231 * 1 2 3 30 30 H 1.09007 * 109.47054 * 149.95751 * 1 2 3 31 31 H 1.08006 * 124.71583 * 179.97438 * 4 3 2 32 32 H 1.07996 * 123.46213 * 180.25019 * 5 4 3 33 33 H 0.97004 * 119.99966 * 0.02562 * 9 7 6 34 34 H 1.09005 * 109.46549 * 299.99181 * 12 10 9 35 35 H 1.08994 * 109.47471 * 59.99358 * 12 10 9 36 36 H 1.08995 * 109.46921 * 179.97438 * 12 10 9 37 37 H 1.08999 * 109.47714 * 64.36439 * 13 10 9 38 38 H 1.09004 * 109.47275 * 184.36887 * 13 10 9 39 39 H 1.08996 * 109.46896 * 54.81694 * 15 14 13 40 40 H 1.08999 * 109.47250 * 174.82091 * 15 14 13 41 41 H 1.09000 * 109.47102 * 294.81750 * 15 14 13 42 42 H 1.09000 * 109.47148 * 289.99445 * 16 14 13 43 43 H 1.09001 * 109.47078 * 49.99247 * 16 14 13 44 44 H 0.97002 * 119.99998 * 359.97438 * 19 17 16 45 45 H 0.96998 * 119.99867 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4032 0.0000 4 6 3.9606 0.4694 -0.0008 5 6 3.6943 -0.8314 0.0047 6 6 2.2792 -1.1196 -0.0005 7 6 1.7290 -2.4849 0.0002 8 8 0.5247 -2.6553 0.0007 9 7 2.5597 -3.5461 -0.0009 10 6 2.0123 -4.9050 -0.0008 11 1 1.0868 -4.9239 -0.5764 12 6 1.7268 -5.3396 1.4381 13 6 3.0249 -5.8629 -0.6315 14 7 3.3781 -5.3867 -1.9756 15 6 4.5962 -6.0462 -2.4646 16 6 2.2630 -5.5793 -2.9122 17 6 2.5634 -4.8648 -4.2047 18 8 3.6038 -4.2547 -4.3327 19 7 1.6754 -4.9028 -5.2179 20 6 1.9490 -4.2533 -6.3937 21 1 2.8757 -3.7108 -6.5081 22 6 1.0337 -4.2929 -7.4386 23 7 1.2957 -3.6699 -8.5655 24 14 -0.5691 -5.2319 -7.2412 25 1 -1.6096 -4.3252 -6.6932 26 1 -1.0073 -5.7466 -8.5634 27 1 -0.3643 -6.3704 -6.3098 28 1 -0.3634 -0.0007 1.0276 29 1 -0.3634 0.8903 -0.5132 30 1 -0.3633 -0.8897 -0.5145 31 1 4.9537 0.8938 -0.0014 32 1 4.4576 -1.5954 0.0093 33 1 3.5202 -3.4103 -0.0018 34 1 2.6522 -5.3207 2.0137 35 1 1.0054 -4.6572 1.8875 36 1 1.3190 -6.3504 1.4382 37 1 3.9215 -5.9028 -0.0130 38 1 2.5876 -6.8589 -0.7022 39 1 4.4669 -7.1275 -2.4198 40 1 4.7837 -5.7450 -3.4952 41 1 5.4419 -5.7553 -1.8415 42 1 2.1321 -6.6437 -3.1075 43 1 1.3491 -5.1747 -2.4772 44 1 0.8431 -5.3904 -5.1153 45 1 0.6566 -3.6973 -9.2947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716477778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:56 Heat of formation + Delta-G solvation = -29.442324 kcal Electronic energy + Delta-G solvation = -27707.471269 eV Core-core repulsion = 23852.037639 eV Total energy + Delta-G solvation = -3855.433630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.04265 -38.81114 -37.40125 -36.56128 -34.78349 -33.79953 -31.98215 -31.64232 -31.09298 -28.24322 -27.13140 -26.95946 -24.60064 -23.92716 -22.43186 -21.64779 -20.63201 -19.42976 -19.27518 -18.23292 -17.31407 -16.68086 -16.23517 -15.97097 -15.36670 -15.04347 -14.88074 -14.70219 -14.20329 -14.10999 -13.79637 -13.61885 -13.42314 -13.28227 -13.14860 -12.90154 -12.63805 -12.52508 -12.40213 -12.17778 -12.08508 -11.94612 -11.79414 -11.62200 -11.55056 -11.27130 -11.10352 -11.09643 -10.68684 -10.55979 -9.94923 -9.61454 -9.50337 -8.99946 -8.78862 -8.54113 -8.45439 -8.14804 -7.98870 -6.28310 -3.79221 0.79762 1.45043 1.85238 2.00000 3.05220 3.10661 3.17794 3.33071 3.52693 3.77068 3.93739 4.13470 4.59793 4.64377 4.86934 4.88627 5.04260 5.13445 5.18638 5.25640 5.29579 5.36101 5.47373 5.52006 5.56278 5.59547 5.60281 5.64647 5.83208 5.85400 5.87074 5.93772 5.97155 6.01169 6.07893 6.22818 6.26886 6.43389 6.63426 7.13417 7.26115 7.61417 7.68610 8.17543 8.39868 8.63380 8.98298 9.45867 9.86889 10.84876 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009114 B = 0.003713 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.606209 B = 7540.089764 C = 8897.461373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.138 4.138 3 S 0.167 5.833 4 C -0.236 4.236 5 C -0.098 4.098 6 C -0.172 4.172 7 C 0.585 3.415 8 O -0.545 6.545 9 N -0.699 5.699 10 C 0.146 3.854 11 H 0.088 0.912 12 C -0.160 4.160 13 C 0.043 3.957 14 N -0.515 5.515 15 C 0.023 3.977 16 C 0.040 3.960 17 C 0.455 3.545 18 O -0.559 6.559 19 N -0.591 5.591 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.042 3.958 23 N -0.882 5.882 24 Si 0.878 3.122 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.167 0.833 32 H 0.148 0.852 33 H 0.402 0.598 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.048 0.952 39 H 0.014 0.986 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.088 0.912 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.987 1.350 22.370 22.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.259 4.259 3 S 0.432 5.568 4 C -0.371 4.371 5 C -0.127 4.127 6 C -0.188 4.188 7 C 0.371 3.629 8 O -0.425 6.425 9 N -0.349 5.349 10 C 0.040 3.960 11 H 0.106 0.894 12 C -0.219 4.219 13 C -0.086 4.086 14 N -0.238 5.238 15 C -0.125 4.125 16 C -0.091 4.091 17 C 0.241 3.759 18 O -0.441 6.441 19 N -0.231 5.231 20 C -0.431 4.431 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.522 5.522 24 Si 0.704 3.296 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.185 0.815 32 H 0.166 0.834 33 H 0.237 0.763 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.033 0.967 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.202 0.798 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.604 3.726 22.074 22.443 hybrid contribution -0.584 -3.091 -0.216 3.153 sum 1.020 0.636 21.857 21.890 Atomic orbital electron populations 1.20632 0.86836 1.04593 1.03223 1.24504 1.01775 0.96777 1.02812 1.82992 0.95318 1.07771 1.70689 1.25348 1.02128 0.97236 1.12398 1.21209 0.94587 0.96339 1.00610 1.20134 0.92732 0.93764 1.12180 1.17476 0.86022 0.83736 0.75660 1.90701 1.14537 1.86115 1.51144 1.45577 1.10035 1.04886 1.74418 1.20958 0.97654 0.81328 0.96041 0.89366 1.22147 1.01997 1.01630 0.96164 1.22494 0.98948 0.96051 0.91071 1.61533 1.03890 1.57922 1.00493 1.22526 0.91361 0.94673 1.03892 1.21950 0.94949 0.98671 0.93572 1.19595 0.85824 0.85925 0.84601 1.90519 1.25924 1.45746 1.81895 1.42215 1.18513 1.48354 1.14013 1.19407 1.06956 1.28533 0.88247 0.86314 1.25019 0.98171 0.97582 0.95305 1.69619 1.36343 1.42255 1.04020 0.86699 0.84214 0.80230 0.78433 1.19543 1.20191 1.19556 0.90487 0.91635 0.87601 0.81523 0.83449 0.76280 0.92456 0.91826 0.91715 0.90171 0.93365 0.96728 0.88638 0.92003 0.93398 0.89347 0.79781 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.60 36.00 0.35 -0.82 16 2 C -0.14 -1.82 6.34 -35.11 -0.22 -2.04 16 3 S 0.17 1.76 22.97 -107.50 -2.47 -0.71 16 4 C -0.24 -2.46 11.12 28.86 0.32 -2.14 16 5 C -0.10 -1.15 9.91 -39.02 -0.39 -1.53 16 6 C -0.17 -2.39 5.98 -104.63 -0.63 -3.02 16 7 C 0.58 8.84 7.76 -12.63 -0.10 8.74 16 8 O -0.55 -9.51 13.71 5.25 0.07 -9.44 16 9 N -0.70 -8.87 4.79 -54.96 -0.26 -9.13 16 10 C 0.15 1.70 2.53 -67.93 -0.17 1.53 16 11 H 0.09 1.23 6.16 -51.93 -0.32 0.91 16 12 C -0.16 -1.51 9.49 37.16 0.35 -1.15 16 13 C 0.04 0.47 4.52 -3.83 -0.02 0.46 16 14 N -0.51 -7.71 4.20 -244.38 -1.03 -8.74 16 15 C 0.02 0.34 9.19 60.06 0.55 0.89 16 16 C 0.04 0.69 5.30 -4.98 -0.03 0.66 16 17 C 0.45 10.46 7.42 -10.98 -0.08 10.38 16 18 O -0.56 -14.79 13.96 5.55 0.08 -14.71 16 19 N -0.59 -14.45 5.09 -10.97 -0.06 -14.51 16 20 C -0.30 -8.69 10.16 -14.93 -0.15 -8.85 16 21 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 22 C 0.04 1.17 5.50 -17.47 -0.10 1.08 16 23 N -0.88 -26.12 13.96 55.50 0.77 -25.35 16 24 Si 0.88 19.90 27.74 -169.99 -4.71 15.18 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -5.59 6.52 56.52 0.37 -5.23 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.11 1.57 5.94 -51.93 -0.31 1.26 16 31 H 0.17 1.30 8.06 -52.48 -0.42 0.87 16 32 H 0.15 1.42 7.10 -52.49 -0.37 1.05 16 33 H 0.40 4.53 7.15 -40.82 -0.29 4.23 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.74 8.00 -51.93 -0.42 0.32 16 38 H 0.05 0.48 8.06 -51.93 -0.42 0.06 16 39 H 0.01 0.19 8.13 -51.93 -0.42 -0.24 16 40 H 0.10 1.77 5.79 -51.93 -0.30 1.47 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 43 H 0.09 1.46 6.46 -51.93 -0.34 1.12 16 44 H 0.37 8.07 5.76 -40.82 -0.24 7.83 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -34.39 381.24 -8.52 -42.91 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -6.36 Total: 14.56 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -0.31 Total: 4.19 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.57 Total: -57.73 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.15 Total: -24.15 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.71 Total: 15.18 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.47 Total: -0.71 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.39 -8.52 -42.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716477778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.467 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds