Wall clock time and date at job start Tue Mar 31 2020 23:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70445 * 124.58992 * 2 1 4 4 C 1.75498 * 92.44506 * 180.02562 * 3 2 1 5 5 C 1.32776 * 110.57797 * 359.73646 * 4 3 2 6 6 C 1.36007 * 124.59291 * 180.02562 * 2 1 3 7 7 C 1.47191 * 123.46037 * 359.94063 * 6 2 1 8 8 O 1.21633 * 119.99952 * 0.02562 * 7 6 2 9 9 N 1.34772 * 120.00153 * 179.97438 * 7 6 2 10 10 C 1.46499 * 120.00603 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46936 * 34.11801 * 10 9 7 12 12 C 1.53005 * 109.46729 * 274.12857 * 10 9 7 13 13 C 1.52988 * 109.47622 * 154.12506 * 10 9 7 14 14 N 1.46904 * 109.47312 * 304.36257 * 13 10 9 15 15 C 1.46896 * 111.00421 * 164.38168 * 14 13 10 16 16 C 1.46894 * 111.00161 * 288.34057 * 14 13 10 17 17 C 1.50702 * 109.47299 * 169.99625 * 16 14 13 18 18 O 1.21290 * 119.99742 * 359.97438 * 17 16 14 19 19 N 1.34777 * 119.99996 * 180.02562 * 17 16 14 20 20 C 1.37093 * 119.99807 * 180.02562 * 19 17 16 21 21 H 1.07992 * 120.00383 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99965 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00096 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 120.00086 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46794 * 89.99844 * 24 22 20 26 26 H 1.48499 * 109.47232 * 210.00377 * 24 22 20 27 27 H 1.48504 * 109.46901 * 330.00462 * 24 22 20 28 28 H 1.09000 * 109.47571 * 269.96009 * 1 2 3 29 29 H 1.08999 * 109.47245 * 29.96231 * 1 2 3 30 30 H 1.09007 * 109.47054 * 149.95751 * 1 2 3 31 31 H 1.08006 * 124.71583 * 179.97438 * 4 3 2 32 32 H 1.07996 * 123.46213 * 180.25019 * 5 4 3 33 33 H 0.97004 * 119.99966 * 0.02562 * 9 7 6 34 34 H 1.09005 * 109.46549 * 299.99181 * 12 10 9 35 35 H 1.08994 * 109.47471 * 59.99358 * 12 10 9 36 36 H 1.08995 * 109.46921 * 179.97438 * 12 10 9 37 37 H 1.08999 * 109.47714 * 64.36439 * 13 10 9 38 38 H 1.09004 * 109.47275 * 184.36887 * 13 10 9 39 39 H 1.08996 * 109.46896 * 54.81694 * 15 14 13 40 40 H 1.08999 * 109.47250 * 174.82091 * 15 14 13 41 41 H 1.09000 * 109.47102 * 294.81750 * 15 14 13 42 42 H 1.09000 * 109.47148 * 289.99445 * 16 14 13 43 43 H 1.09001 * 109.47078 * 49.99247 * 16 14 13 44 44 H 0.97002 * 119.99998 * 359.97438 * 19 17 16 45 45 H 0.96998 * 119.99867 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4032 0.0000 4 6 3.9606 0.4694 -0.0008 5 6 3.6943 -0.8314 0.0047 6 6 2.2792 -1.1196 -0.0005 7 6 1.7290 -2.4849 0.0002 8 8 0.5247 -2.6553 0.0007 9 7 2.5597 -3.5461 -0.0009 10 6 2.0123 -4.9050 -0.0008 11 1 1.0868 -4.9239 -0.5764 12 6 1.7268 -5.3396 1.4381 13 6 3.0249 -5.8629 -0.6315 14 7 3.3781 -5.3867 -1.9756 15 6 4.5962 -6.0462 -2.4646 16 6 2.2630 -5.5793 -2.9122 17 6 2.5634 -4.8648 -4.2047 18 8 3.6038 -4.2547 -4.3327 19 7 1.6754 -4.9028 -5.2179 20 6 1.9490 -4.2533 -6.3937 21 1 2.8757 -3.7108 -6.5081 22 6 1.0337 -4.2929 -7.4386 23 7 1.2957 -3.6699 -8.5655 24 14 -0.5691 -5.2319 -7.2412 25 1 -1.6096 -4.3252 -6.6932 26 1 -1.0073 -5.7466 -8.5634 27 1 -0.3643 -6.3704 -6.3098 28 1 -0.3634 -0.0007 1.0276 29 1 -0.3634 0.8903 -0.5132 30 1 -0.3633 -0.8897 -0.5145 31 1 4.9537 0.8938 -0.0014 32 1 4.4576 -1.5954 0.0093 33 1 3.5202 -3.4103 -0.0018 34 1 2.6522 -5.3207 2.0137 35 1 1.0054 -4.6572 1.8875 36 1 1.3190 -6.3504 1.4382 37 1 3.9215 -5.9028 -0.0130 38 1 2.5876 -6.8589 -0.7022 39 1 4.4669 -7.1275 -2.4198 40 1 4.7837 -5.7450 -3.4952 41 1 5.4419 -5.7553 -1.8415 42 1 2.1321 -6.6437 -3.1075 43 1 1.3491 -5.1747 -2.4772 44 1 0.8431 -5.3904 -5.1153 45 1 0.6566 -3.6973 -9.2947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716477778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:54 Heat of formation + Delta-G solvation = -55.627119 kcal Electronic energy + Delta-G solvation = -27708.606727 eV Core-core repulsion = 23852.037639 eV Total energy + Delta-G solvation = -3856.569088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.12082 -40.44933 -38.58985 -37.66805 -36.16851 -35.58204 -33.75865 -32.90991 -32.06066 -29.74776 -28.05284 -27.93584 -26.48815 -24.90766 -23.58637 -22.63720 -21.73675 -21.16113 -20.41603 -20.13932 -18.25601 -17.93661 -17.53779 -17.10765 -16.77440 -16.68027 -16.05771 -15.90528 -15.59497 -15.25338 -15.13487 -14.93759 -14.66400 -14.39170 -14.37387 -14.30409 -14.06224 -13.59447 -13.54395 -13.39858 -13.15949 -12.99898 -12.91329 -12.81644 -12.68964 -12.55934 -12.43576 -12.39279 -12.00052 -11.97918 -11.67917 -11.47399 -10.72258 -10.35646 -10.23800 -10.02820 -9.69010 -9.33789 -9.19397 -8.42778 -6.02451 -0.16059 0.57480 0.97598 1.06408 1.26444 1.32535 1.40081 1.94969 2.20171 2.32366 2.48331 2.66647 3.13221 3.21710 3.74985 3.79879 3.94109 4.05069 4.17208 4.20908 4.31098 4.33215 4.42716 4.48710 4.58081 4.62851 4.65054 4.66863 4.72970 4.79549 4.84755 4.96288 5.07315 5.09712 5.22340 5.26571 5.32232 5.33692 5.51451 5.64694 5.89119 6.01054 6.20953 6.58645 6.66996 6.87601 7.34176 7.38961 7.95881 8.74888 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009114 B = 0.003713 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.606209 B = 7540.089764 C = 8897.461373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.166 4.166 3 S 0.207 5.793 4 C -0.235 4.235 5 C -0.113 4.113 6 C -0.197 4.197 7 C 0.574 3.426 8 O -0.579 6.579 9 N -0.691 5.691 10 C 0.142 3.858 11 H 0.063 0.937 12 C -0.150 4.150 13 C 0.050 3.950 14 N -0.533 5.533 15 C 0.029 3.971 16 C 0.054 3.946 17 C 0.453 3.547 18 O -0.599 6.599 19 N -0.596 5.596 20 C -0.324 4.324 21 H 0.057 0.943 22 C -0.012 4.012 23 N -0.933 5.933 24 Si 0.958 3.042 25 H -0.262 1.262 26 H -0.271 1.271 27 H -0.233 1.233 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.196 0.804 32 H 0.164 0.836 33 H 0.409 0.591 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.048 0.952 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.386 0.614 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 -0.426 24.856 24.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.286 4.286 3 S 0.473 5.527 4 C -0.369 4.369 5 C -0.141 4.141 6 C -0.214 4.214 7 C 0.361 3.639 8 O -0.462 6.462 9 N -0.341 5.341 10 C 0.037 3.963 11 H 0.081 0.919 12 C -0.209 4.209 13 C -0.077 4.077 14 N -0.258 5.258 15 C -0.119 4.119 16 C -0.078 4.078 17 C 0.241 3.759 18 O -0.482 6.482 19 N -0.238 5.238 20 C -0.453 4.453 21 H 0.075 0.925 22 C -0.211 4.211 23 N -0.574 5.574 24 Si 0.779 3.221 25 H -0.187 1.187 26 H -0.196 1.196 27 H -0.157 1.157 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.213 0.787 32 H 0.181 0.819 33 H 0.245 0.755 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.116 0.884 44 H 0.221 0.779 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.205 1.924 24.596 24.701 hybrid contribution -0.287 -2.422 -0.958 2.621 sum 0.918 -0.498 23.638 23.661 Atomic orbital electron populations 1.20562 0.86909 1.03831 1.03647 1.24804 1.02432 0.98142 1.03267 1.82793 0.94566 1.05991 1.69389 1.25778 1.03417 0.96938 1.10790 1.21367 0.93864 0.97440 1.01453 1.20354 0.94100 0.93505 1.13474 1.17809 0.85886 0.84772 0.75454 1.90674 1.15854 1.86699 1.52937 1.45604 1.10200 1.05003 1.73329 1.21077 0.96872 0.80993 0.97345 0.91884 1.22049 1.02435 1.02037 0.94360 1.22566 1.00035 0.96473 0.88644 1.61453 1.03279 1.59322 1.01718 1.22400 0.92020 0.95932 1.01528 1.21802 0.96095 0.99296 0.90575 1.20829 0.84530 0.84607 0.85939 1.90504 1.27622 1.47145 1.82961 1.42087 1.19702 1.48850 1.13176 1.18983 1.05598 1.29851 0.90891 0.92451 1.26023 1.02620 0.98318 0.94145 1.69790 1.38383 1.43987 1.05270 0.85453 0.77628 0.79563 0.79471 1.18696 1.19585 1.15674 0.89510 0.90158 0.90514 0.78698 0.81894 0.75463 0.90650 0.93864 0.89752 0.87436 0.91039 0.94427 0.93324 0.89850 0.90392 0.88391 0.77898 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.32 9.60 71.24 0.68 -1.63 16 2 C -0.17 -4.38 6.34 25.17 0.16 -4.22 16 3 S 0.21 4.11 22.97 -56.49 -1.30 2.82 16 4 C -0.23 -4.48 11.12 66.64 0.74 -3.74 16 5 C -0.11 -2.53 9.91 22.67 0.22 -2.30 16 6 C -0.20 -5.54 5.98 -19.87 -0.12 -5.66 16 7 C 0.57 17.61 7.76 86.60 0.67 18.29 16 8 O -0.58 -20.93 13.71 -4.13 -0.06 -20.99 16 9 N -0.69 -16.93 4.79 -446.04 -2.13 -19.07 16 10 C 0.14 3.04 2.53 44.99 0.11 3.15 16 11 H 0.06 1.69 6.16 -2.38 -0.01 1.68 16 12 C -0.15 -2.43 9.49 71.98 0.68 -1.75 16 13 C 0.05 0.92 4.52 86.30 0.39 1.31 16 14 N -0.53 -14.79 4.20 -927.09 -3.89 -18.68 16 15 C 0.03 0.79 9.19 127.69 1.17 1.96 16 16 C 0.05 1.73 5.30 85.56 0.45 2.19 16 17 C 0.45 21.08 7.42 87.66 0.65 21.73 16 18 O -0.60 -33.00 13.96 -3.06 -0.04 -33.05 16 19 N -0.60 -29.39 5.09 -306.99 -1.56 -30.96 16 20 C -0.32 -19.46 10.16 84.04 0.85 -18.61 16 21 H 0.06 4.06 7.39 -2.91 -0.02 4.04 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.93 -57.34 13.96 21.66 0.30 -57.04 16 24 Si 0.96 40.53 27.74 68.60 1.90 42.43 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 27 H -0.23 -8.41 6.52 99.48 0.65 -7.77 16 28 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 2.42 5.94 -2.38 -0.01 2.41 16 31 H 0.20 2.49 8.06 -2.91 -0.02 2.47 16 32 H 0.16 2.95 7.10 -2.91 -0.02 2.92 16 33 H 0.41 8.64 7.15 -92.70 -0.66 7.98 16 34 H 0.07 0.95 8.14 -2.38 -0.02 0.94 16 35 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 37 H 0.11 1.44 8.00 -2.39 -0.02 1.42 16 38 H 0.07 1.05 8.06 -2.38 -0.02 1.03 16 39 H 0.04 0.84 8.13 -2.39 -0.02 0.82 16 40 H 0.05 1.81 5.79 -2.39 -0.01 1.79 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.08 2.09 8.12 -2.39 -0.02 2.07 16 43 H 0.10 3.05 6.46 -2.39 -0.02 3.03 16 44 H 0.39 16.22 5.76 -92.71 -0.53 15.68 16 45 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -81.99 381.24 0.15 -81.84 By element: Atomic # 1 Polarization: 42.44 SS G_CDS: -0.22 Total: 42.22 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 7.15 Total: 10.47 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -7.28 Total: -125.75 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -0.10 Total: -54.04 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 1.90 Total: 42.43 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.30 Total: 2.82 kcal Total: -81.99 0.15 -81.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716477778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.215 kcal (2) G-P(sol) polarization free energy of solvation -81.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds