Wall clock time and date at job start Tue Mar 31 2020 23:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35967 * 117.00009 * 2 1 4 4 C 1.37566 * 120.82120 * 179.74320 * 3 2 1 5 5 C 1.38044 * 114.24739 * 179.77214 * 4 3 2 6 6 C 1.47115 * 127.76345 * 180.21467 * 5 4 3 7 7 O 1.21630 * 119.99809 * 0.29416 * 6 5 4 8 8 N 1.34769 * 120.00094 * 180.30095 * 6 5 4 9 9 C 1.46499 * 120.00023 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47185 * 180.02562 * 9 8 6 11 11 C 1.52994 * 109.49929 * 60.00145 * 10 9 8 12 12 C 1.53047 * 109.49520 * 180.02562 * 10 9 8 13 13 C 1.53047 * 109.53565 * 181.28471 * 12 10 9 14 14 C 1.53185 * 109.33748 * 298.68029 * 13 12 10 15 15 N 1.46926 * 108.77858 * 54.62480 * 14 13 12 16 16 C 1.36930 * 120.63535 * 126.41392 * 15 14 13 17 17 H 1.08000 * 119.99725 * 331.81919 * 16 15 14 18 18 C 1.38814 * 120.00579 * 151.82547 * 16 15 14 19 19 N 1.31621 * 119.99430 * 343.07106 * 18 16 15 20 20 Si 1.86791 * 120.00426 * 163.07266 * 18 16 15 21 21 H 1.48493 * 109.47376 * 89.99656 * 20 18 16 22 22 H 1.48507 * 109.47071 * 209.99747 * 20 18 16 23 23 H 1.48499 * 109.47056 * 329.99761 * 20 18 16 24 24 C 1.46927 * 118.73444 * 306.38790 * 15 14 13 25 25 S 1.77241 * 104.47757 * 0.43446 * 5 4 3 26 26 N 1.30355 * 120.82767 * 0.02904 * 3 2 1 27 27 H 1.09006 * 109.47096 * 300.00301 * 1 2 3 28 28 H 1.08999 * 109.47057 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46877 * 59.99940 * 1 2 3 30 30 H 1.08003 * 122.87986 * 359.97438 * 4 3 2 31 31 H 0.97001 * 120.00185 * 359.97438 * 8 6 5 32 32 H 1.08994 * 109.47503 * 300.00078 * 9 8 6 33 33 H 1.09003 * 109.46773 * 60.00003 * 9 8 6 34 34 H 1.09008 * 109.46987 * 60.00032 * 11 10 9 35 35 H 1.09002 * 109.47270 * 179.97438 * 11 10 9 36 36 H 1.08995 * 109.47199 * 300.00056 * 11 10 9 37 37 H 1.08997 * 109.45956 * 301.33451 * 12 10 9 38 38 H 1.09002 * 109.46301 * 61.29626 * 12 10 9 39 39 H 1.08996 * 109.49376 * 178.71279 * 13 12 10 40 40 H 1.09000 * 109.47227 * 58.63473 * 13 12 10 41 41 H 1.08998 * 109.58956 * 294.83352 * 14 13 12 42 42 H 1.09005 * 109.70619 * 174.47870 * 14 13 12 43 43 H 0.97001 * 120.00062 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.58946 * 293.81991 * 24 15 14 45 45 H 1.09004 * 109.70501 * 173.46727 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3032 0.0053 5 6 3.9007 2.5968 -0.0004 6 6 5.3050 3.0351 -0.0014 7 8 6.1994 2.2108 -0.0023 8 7 5.6005 4.3500 -0.0012 9 6 6.9989 4.7866 -0.0017 10 6 7.0559 6.3155 -0.0007 11 6 6.3551 6.8519 1.2490 12 6 8.5167 6.7721 -0.0018 13 6 8.5750 8.3011 0.0315 14 6 7.8914 8.8621 -1.2194 15 7 6.5316 8.3119 -1.3023 16 6 5.4493 9.1418 -1.4246 17 1 5.4888 10.1434 -1.0225 18 6 4.3015 8.6959 -2.0653 19 7 4.3502 7.6304 -2.8366 20 14 2.6879 9.6077 -1.8330 21 1 2.5600 10.6603 -2.8725 22 1 1.5575 8.6523 -1.9541 23 1 2.6634 10.2355 -0.4874 24 6 6.3552 6.8541 -1.2520 25 16 2.4471 3.6110 0.0003 26 7 1.3522 2.3149 0.0006 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 4.0643 0.4372 0.0100 31 1 4.8872 5.0075 -0.0008 32 1 7.4992 4.4042 0.8879 33 1 7.4985 4.4045 -0.8920 34 1 6.8554 6.4693 2.1386 35 1 6.3963 7.9411 1.2495 36 1 5.3145 6.5274 1.2495 37 1 9.0236 6.3698 0.8752 38 1 9.0098 6.4100 -0.9040 39 1 9.6155 8.6250 0.0537 40 1 8.0610 8.6650 0.9212 41 1 8.4570 8.5737 -2.1054 42 1 7.8424 9.9492 -1.1551 43 1 3.5482 7.3189 -3.2846 44 1 6.7955 6.4019 -2.1406 45 1 5.2929 6.6138 -1.2078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716893942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:44 Heat of formation + Delta-G solvation = -7.720460 kcal Electronic energy + Delta-G solvation = -27867.289750 eV Core-core repulsion = 24012.798051 eV Total energy + Delta-G solvation = -3854.491699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.37069 -39.73728 -38.37932 -36.55336 -34.90452 -33.29872 -31.80630 -31.10203 -29.92555 -28.29855 -26.76987 -26.11414 -25.36072 -24.27048 -22.33082 -21.61450 -20.53284 -20.00818 -18.77387 -18.02369 -17.71894 -16.75794 -16.41554 -16.31005 -15.82943 -15.34758 -14.92100 -14.77075 -14.16237 -13.98757 -13.90644 -13.72299 -13.46510 -13.38619 -13.21251 -12.81446 -12.37224 -12.26997 -12.23613 -11.71630 -11.53011 -11.36007 -11.29872 -11.00386 -10.92025 -10.88982 -10.69308 -10.44517 -10.25306 -10.18229 -10.10383 -9.86217 -9.84206 -9.62498 -9.43507 -8.92347 -8.52758 -8.50961 -6.70469 -5.84518 -3.26691 0.04681 1.07097 1.43585 2.10561 2.75166 3.06740 3.32560 3.32816 3.41568 3.42553 4.44318 4.49164 4.85491 4.92035 5.01382 5.05039 5.12789 5.23928 5.31466 5.37079 5.45991 5.53243 5.54939 5.71838 5.88630 5.93446 5.96739 6.02268 6.11292 6.17646 6.36097 6.37156 6.46340 6.51450 6.62891 6.78128 6.82264 6.82817 6.91651 6.99999 7.22360 7.47946 7.53734 7.74419 8.11758 8.38581 9.15641 9.78747 10.36270 11.23582 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.003835 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.756338 B = 7300.264168 C = 9210.452624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.296 6.296 3 C 0.302 3.698 4 C -0.134 4.134 5 C -0.179 4.179 6 C 0.591 3.409 7 O -0.525 6.525 8 N -0.703 5.703 9 C 0.136 3.864 10 C -0.105 4.105 11 C -0.128 4.128 12 C -0.095 4.095 13 C -0.135 4.135 14 C 0.143 3.857 15 N -0.588 5.588 16 C -0.250 4.250 17 H 0.065 0.935 18 C 0.005 3.995 19 N -0.901 5.901 20 Si 0.894 3.106 21 H -0.287 1.287 22 H -0.288 1.288 23 H -0.279 1.279 24 C 0.185 3.815 25 S 0.311 5.689 26 N -0.514 5.514 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.177 0.823 31 H 0.407 0.593 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.016 0.984 42 H 0.052 0.948 43 H 0.254 0.746 44 H 0.019 0.981 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.517 -10.462 7.680 13.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.202 6.202 3 C 0.088 3.912 4 C -0.172 4.172 5 C -0.311 4.311 6 C 0.374 3.626 7 O -0.402 6.402 8 N -0.355 5.355 9 C 0.012 3.988 10 C -0.107 4.107 11 C -0.185 4.185 12 C -0.133 4.133 13 C -0.174 4.174 14 C 0.017 3.983 15 N -0.310 5.310 16 C -0.380 4.380 17 H 0.082 0.918 18 C -0.194 4.194 19 N -0.546 5.546 20 Si 0.724 3.276 21 H -0.214 1.214 22 H -0.214 1.214 23 H -0.204 1.204 24 C 0.058 3.942 25 S 0.460 5.540 26 N -0.356 5.356 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.194 0.806 31 H 0.243 0.757 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.373 -9.734 7.570 12.557 hybrid contribution -0.584 -0.661 -0.083 0.886 sum -2.957 -10.394 7.486 13.147 Atomic orbital electron populations 1.22975 0.76779 1.03500 1.02651 1.86296 1.22941 1.22607 1.88393 1.19889 0.89775 0.85258 0.96238 1.20700 0.92269 0.98478 1.05730 1.26095 0.99689 0.97799 1.07529 1.16623 0.85168 0.83187 0.77596 1.90820 1.46679 1.52699 1.50050 1.45958 1.10610 1.05917 1.73019 1.21521 0.80226 0.95154 1.01878 1.21578 0.97293 0.91540 1.00274 1.21745 0.98804 1.02822 0.95140 1.21343 0.94798 0.96499 1.00633 1.22044 0.99211 0.95282 1.00881 1.20933 0.86944 0.96749 0.93705 1.43959 1.00594 1.01576 1.84867 1.19143 0.91699 0.97019 1.30130 0.91766 1.24999 0.99259 0.98395 0.96719 1.70022 1.27774 1.26238 1.30546 0.86427 0.83921 0.79179 0.78104 1.21415 1.21404 1.20429 1.20794 0.99931 0.83458 0.90006 1.85436 0.89678 1.10968 1.67879 1.76397 1.27184 1.01258 1.30773 0.92135 0.88066 0.92064 0.80580 0.75651 0.91596 0.91161 0.94335 0.90737 0.93759 0.93269 0.92458 0.93153 0.91921 0.96560 0.92905 0.93587 0.96304 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.43 101.05 1.05 1.37 16 2 O -0.30 -3.48 10.51 -19.64 -0.21 -3.69 16 3 C 0.30 4.01 7.36 -18.42 -0.14 3.87 16 4 C -0.13 -1.77 10.09 -39.90 -0.40 -2.17 16 5 C -0.18 -2.57 6.74 -36.05 -0.24 -2.81 16 6 C 0.59 9.42 7.80 -12.66 -0.10 9.32 16 7 O -0.52 -9.50 16.95 5.25 0.09 -9.41 16 8 N -0.70 -11.00 4.99 -61.49 -0.31 -11.30 16 9 C 0.14 2.10 4.57 -4.04 -0.02 2.09 16 10 C -0.10 -1.74 0.53 -154.39 -0.08 -1.82 16 11 C -0.13 -2.06 7.81 37.15 0.29 -1.77 16 12 C -0.09 -1.45 4.71 -26.68 -0.13 -1.57 16 13 C -0.14 -2.15 5.74 -26.61 -0.15 -2.30 16 14 C 0.14 2.80 6.52 -3.71 -0.02 2.78 16 15 N -0.59 -13.47 2.43 -172.32 -0.42 -13.89 16 16 C -0.25 -6.38 9.58 -15.06 -0.14 -6.52 16 17 H 0.06 1.63 7.89 -52.49 -0.41 1.22 16 18 C 0.00 0.13 4.92 -17.43 -0.09 0.04 16 19 N -0.90 -24.38 11.19 55.49 0.62 -23.76 16 20 Si 0.89 20.55 29.59 -169.99 -5.03 15.52 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.18 3.93 3.72 -3.71 -0.01 3.91 16 25 S 0.31 4.36 23.27 -107.50 -2.50 1.86 16 26 N -0.51 -7.26 11.03 29.19 0.32 -6.94 16 27 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 30 H 0.18 2.08 8.06 -52.48 -0.42 1.65 16 31 H 0.41 6.42 5.58 -40.82 -0.23 6.19 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.04 0.54 8.14 -51.92 -0.42 0.11 16 35 H 0.07 1.33 5.97 -51.93 -0.31 1.02 16 36 H 0.04 0.71 6.86 -51.93 -0.36 0.35 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.01 6.33 -51.93 -0.33 0.68 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 43 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.09 2.02 4.97 -51.93 -0.26 1.76 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -29.03 373.25 -8.50 -37.53 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.51 Total: 4.05 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -0.18 Total: 4.40 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.22 Total: -55.89 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.12 Total: -13.10 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -2.50 Total: 1.86 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.03 -8.50 -37.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716893942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.813 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds