Wall clock time and date at job start Tue Mar 31 2020 23:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35967 * 117.00009 * 2 1 4 4 C 1.37566 * 120.82120 * 179.74320 * 3 2 1 5 5 C 1.38044 * 114.24739 * 179.77214 * 4 3 2 6 6 C 1.47115 * 127.76345 * 180.21467 * 5 4 3 7 7 O 1.21630 * 119.99809 * 0.29416 * 6 5 4 8 8 N 1.34769 * 120.00094 * 180.30095 * 6 5 4 9 9 C 1.46499 * 120.00023 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47185 * 180.02562 * 9 8 6 11 11 C 1.52994 * 109.49929 * 60.00145 * 10 9 8 12 12 C 1.53047 * 109.49520 * 180.02562 * 10 9 8 13 13 C 1.53047 * 109.53565 * 181.28471 * 12 10 9 14 14 C 1.53185 * 109.33748 * 298.68029 * 13 12 10 15 15 N 1.46926 * 108.77858 * 54.62480 * 14 13 12 16 16 C 1.36930 * 120.63535 * 126.41392 * 15 14 13 17 17 H 1.08000 * 119.99725 * 331.81919 * 16 15 14 18 18 C 1.38814 * 120.00579 * 151.82547 * 16 15 14 19 19 N 1.31621 * 119.99430 * 343.07106 * 18 16 15 20 20 Si 1.86791 * 120.00426 * 163.07266 * 18 16 15 21 21 H 1.48493 * 109.47376 * 89.99656 * 20 18 16 22 22 H 1.48507 * 109.47071 * 209.99747 * 20 18 16 23 23 H 1.48499 * 109.47056 * 329.99761 * 20 18 16 24 24 C 1.46927 * 118.73444 * 306.38790 * 15 14 13 25 25 S 1.77241 * 104.47757 * 0.43446 * 5 4 3 26 26 N 1.30355 * 120.82767 * 0.02904 * 3 2 1 27 27 H 1.09006 * 109.47096 * 300.00301 * 1 2 3 28 28 H 1.08999 * 109.47057 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46877 * 59.99940 * 1 2 3 30 30 H 1.08003 * 122.87986 * 359.97438 * 4 3 2 31 31 H 0.97001 * 120.00185 * 359.97438 * 8 6 5 32 32 H 1.08994 * 109.47503 * 300.00078 * 9 8 6 33 33 H 1.09003 * 109.46773 * 60.00003 * 9 8 6 34 34 H 1.09008 * 109.46987 * 60.00032 * 11 10 9 35 35 H 1.09002 * 109.47270 * 179.97438 * 11 10 9 36 36 H 1.08995 * 109.47199 * 300.00056 * 11 10 9 37 37 H 1.08997 * 109.45956 * 301.33451 * 12 10 9 38 38 H 1.09002 * 109.46301 * 61.29626 * 12 10 9 39 39 H 1.08996 * 109.49376 * 178.71279 * 13 12 10 40 40 H 1.09000 * 109.47227 * 58.63473 * 13 12 10 41 41 H 1.08998 * 109.58956 * 294.83352 * 14 13 12 42 42 H 1.09005 * 109.70619 * 174.47870 * 14 13 12 43 43 H 0.97001 * 120.00062 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.58946 * 293.81991 * 24 15 14 45 45 H 1.09004 * 109.70501 * 173.46727 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3032 0.0053 5 6 3.9007 2.5968 -0.0004 6 6 5.3050 3.0351 -0.0014 7 8 6.1994 2.2108 -0.0023 8 7 5.6005 4.3500 -0.0012 9 6 6.9989 4.7866 -0.0017 10 6 7.0559 6.3155 -0.0007 11 6 6.3551 6.8519 1.2490 12 6 8.5167 6.7721 -0.0018 13 6 8.5750 8.3011 0.0315 14 6 7.8914 8.8621 -1.2194 15 7 6.5316 8.3119 -1.3023 16 6 5.4493 9.1418 -1.4246 17 1 5.4888 10.1434 -1.0225 18 6 4.3015 8.6959 -2.0653 19 7 4.3502 7.6304 -2.8366 20 14 2.6879 9.6077 -1.8330 21 1 2.5600 10.6603 -2.8725 22 1 1.5575 8.6523 -1.9541 23 1 2.6634 10.2355 -0.4874 24 6 6.3552 6.8541 -1.2520 25 16 2.4471 3.6110 0.0003 26 7 1.3522 2.3149 0.0006 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 4.0643 0.4372 0.0100 31 1 4.8872 5.0075 -0.0008 32 1 7.4992 4.4042 0.8879 33 1 7.4985 4.4045 -0.8920 34 1 6.8554 6.4693 2.1386 35 1 6.3963 7.9411 1.2495 36 1 5.3145 6.5274 1.2495 37 1 9.0236 6.3698 0.8752 38 1 9.0098 6.4100 -0.9040 39 1 9.6155 8.6250 0.0537 40 1 8.0610 8.6650 0.9212 41 1 8.4570 8.5737 -2.1054 42 1 7.8424 9.9492 -1.1551 43 1 3.5482 7.3189 -3.2846 44 1 6.7955 6.4019 -2.1406 45 1 5.2929 6.6138 -1.2078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716893942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:44 Heat of formation + Delta-G solvation = -26.730019 kcal Electronic energy + Delta-G solvation = -27868.114066 eV Core-core repulsion = 24012.798051 eV Total energy + Delta-G solvation = -3855.316015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.44677 -40.96783 -39.79003 -37.56217 -36.37473 -34.93381 -33.20881 -32.37425 -31.57127 -29.17179 -28.02468 -27.54513 -27.05847 -25.42571 -23.88357 -22.86463 -21.93439 -21.19786 -19.97294 -19.39596 -18.80590 -18.47051 -17.50782 -17.35377 -17.10442 -16.77939 -16.41695 -15.86741 -15.68285 -15.40733 -15.17612 -15.15811 -14.78046 -14.52204 -14.51214 -14.29633 -13.78904 -13.74110 -13.12832 -13.02851 -12.99313 -12.70609 -12.59081 -12.52985 -12.26744 -12.17281 -12.12245 -11.99686 -11.82848 -11.70003 -11.48037 -11.37141 -11.08534 -10.96787 -10.94143 -10.47957 -10.19618 -9.57045 -8.57679 -7.80779 -5.24841 -1.06685 -0.02766 0.36372 1.02995 1.47953 1.52181 1.59367 1.67508 1.85276 2.25986 2.55337 3.32229 3.38411 3.61992 3.75435 3.96708 4.03768 4.07114 4.08015 4.28125 4.32782 4.40226 4.49823 4.55313 4.57458 4.69517 4.75504 4.77258 4.83660 4.93455 5.02444 5.07589 5.13401 5.20037 5.22788 5.34608 5.42480 5.48049 5.52934 5.66762 5.76017 5.82001 5.88896 6.23274 6.45515 6.84972 7.22436 7.93418 8.45650 9.24390 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.003835 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.756338 B = 7300.264168 C = 9210.452624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.299 6.299 3 C 0.302 3.698 4 C -0.123 4.123 5 C -0.190 4.190 6 C 0.595 3.405 7 O -0.548 6.548 8 N -0.703 5.703 9 C 0.139 3.861 10 C -0.093 4.093 11 C -0.122 4.122 12 C -0.094 4.094 13 C -0.124 4.124 14 C 0.136 3.864 15 N -0.604 5.604 16 C -0.254 4.254 17 H 0.062 0.938 18 C -0.039 4.039 19 N -0.929 5.929 20 Si 0.948 3.052 21 H -0.292 1.292 22 H -0.291 1.291 23 H -0.270 1.270 24 C 0.195 3.805 25 S 0.299 5.701 26 N -0.521 5.521 27 H 0.060 0.940 28 H 0.135 0.865 29 H 0.057 0.943 30 H 0.192 0.808 31 H 0.405 0.595 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.038 0.962 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.007 0.993 42 H 0.050 0.950 43 H 0.249 0.751 44 H -0.016 1.016 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.135 -11.192 9.411 14.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.205 6.205 3 C 0.089 3.911 4 C -0.161 4.161 5 C -0.321 4.321 6 C 0.379 3.621 7 O -0.428 6.428 8 N -0.354 5.354 9 C 0.016 3.984 10 C -0.095 4.095 11 C -0.179 4.179 12 C -0.132 4.132 13 C -0.162 4.162 14 C 0.011 3.989 15 N -0.326 5.326 16 C -0.385 4.385 17 H 0.080 0.920 18 C -0.235 4.235 19 N -0.575 5.575 20 Si 0.777 3.223 21 H -0.219 1.219 22 H -0.218 1.218 23 H -0.195 1.195 24 C 0.069 3.931 25 S 0.449 5.551 26 N -0.364 5.364 27 H 0.079 0.921 28 H 0.153 0.847 29 H 0.075 0.925 30 H 0.209 0.791 31 H 0.242 0.758 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.025 0.975 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.002 0.998 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.977 -10.450 9.321 14.142 hybrid contribution -0.713 -0.450 -0.673 1.079 sum -2.690 -10.901 8.648 14.172 Atomic orbital electron populations 1.23260 0.75063 1.05704 1.02447 1.86315 1.24619 1.21567 1.87994 1.19997 0.89906 0.85655 0.95547 1.20898 0.92535 0.98502 1.04135 1.25909 0.98962 0.98337 1.08920 1.16717 0.85545 0.82898 0.76906 1.90802 1.47484 1.53126 1.51353 1.45990 1.10715 1.05962 1.72744 1.21503 0.80294 0.94173 1.02425 1.21383 0.98002 0.92130 0.98011 1.21679 0.98837 1.01650 0.95774 1.21373 0.93673 0.96099 1.02035 1.21919 1.00348 0.95501 0.98470 1.21104 0.85610 0.96813 0.95418 1.44205 1.01394 1.02042 1.84989 1.19394 0.92652 0.97251 1.29169 0.91995 1.25566 1.01662 0.99311 0.96965 1.70162 1.27913 1.27659 1.31741 0.85572 0.80762 0.77882 0.78073 1.21914 1.21753 1.19469 1.20576 0.98813 0.82743 0.91002 1.85451 0.89816 1.11320 1.68491 1.76416 1.27224 1.01472 1.31265 0.92100 0.84726 0.92472 0.79112 0.75781 0.89486 0.92066 0.91435 0.92447 0.94329 0.89959 0.92794 0.90235 0.91719 0.97503 0.93188 0.94219 0.99779 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.43 113.37 1.18 1.64 16 2 O -0.30 -6.53 10.51 -93.18 -0.98 -7.51 16 3 C 0.30 7.70 7.36 84.75 0.62 8.32 16 4 C -0.12 -3.12 10.09 22.06 0.22 -2.89 16 5 C -0.19 -5.36 6.74 24.56 0.17 -5.20 16 6 C 0.60 18.72 7.80 86.57 0.68 19.40 16 7 O -0.55 -19.44 16.95 -4.13 -0.07 -19.51 16 8 N -0.70 -21.81 4.99 -466.70 -2.33 -24.14 16 9 C 0.14 4.16 4.57 86.38 0.39 4.56 16 10 C -0.09 -3.00 0.53 -52.10 -0.03 -3.03 16 11 C -0.12 -3.71 7.81 71.98 0.56 -3.15 16 12 C -0.09 -2.63 4.71 30.63 0.14 -2.49 16 13 C -0.12 -3.63 5.74 30.67 0.18 -3.46 16 14 C 0.14 5.27 6.52 86.36 0.56 5.83 16 15 N -0.60 -27.98 2.43 -699.10 -1.70 -29.68 16 16 C -0.25 -13.12 9.58 84.04 0.81 -12.31 16 17 H 0.06 3.16 7.89 -2.91 -0.02 3.14 16 18 C -0.04 -2.06 4.92 84.86 0.42 -1.65 16 19 N -0.93 -51.73 11.19 21.65 0.24 -51.48 16 20 Si 0.95 42.80 29.59 68.60 2.03 44.83 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 24 C 0.19 8.45 3.72 86.36 0.32 8.77 16 25 S 0.30 8.42 23.27 -56.49 -1.31 7.11 16 26 N -0.52 -14.39 11.03 -175.22 -1.93 -16.32 16 27 H 0.06 0.95 8.13 -2.38 -0.02 0.93 16 28 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 30 H 0.19 4.21 8.06 -2.91 -0.02 4.19 16 31 H 0.41 12.95 5.58 -92.71 -0.52 12.43 16 32 H 0.09 2.28 8.14 -2.39 -0.02 2.27 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 34 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.06 1.96 5.97 -2.39 -0.01 1.94 16 36 H 0.04 1.20 6.86 -2.39 -0.02 1.18 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 1.91 6.33 -2.39 -0.02 1.90 16 41 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.05 1.92 7.93 -2.38 -0.02 1.90 16 43 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 44 H -0.02 -0.78 8.14 -2.39 -0.02 -0.80 16 45 H 0.06 3.05 4.97 -2.39 -0.01 3.04 16 Total: -1.00 -62.94 373.25 0.67 -62.28 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.50 Total: 20.08 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 6.23 Total: 14.35 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -5.72 Total: -121.63 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -1.05 Total: -27.02 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 8.42 SS G_CDS: -1.31 Total: 7.11 kcal Total: -62.94 0.67 -62.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716893942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.546 kcal (2) G-P(sol) polarization free energy of solvation -62.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds