Wall clock time and date at job start Tue Mar 31 2020 22:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86795 * 119.99880 * 2 1 4 4 H 1.48504 * 109.46920 * 239.99688 * 3 2 1 5 5 H 1.48503 * 109.47106 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47250 * 119.99821 * 3 2 1 7 7 C 1.38796 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99441 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00467 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00025 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47027 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00035 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00217 * 180.02562 * 11 10 9 14 14 C 1.46488 * 125.29053 * 180.02562 * 13 11 10 15 15 C 1.53814 * 108.30651 * 178.13298 * 14 13 11 16 16 H 1.09004 * 112.68132 * 109.40256 * 15 14 13 17 17 C 1.54185 * 108.41782 * 234.82654 * 15 14 13 18 18 N 1.47829 * 107.26331 * 111.21725 * 17 15 14 19 19 C 1.46900 * 110.99662 * 214.65524 * 18 17 15 20 20 H 1.08998 * 110.43317 * 56.08699 * 19 18 17 21 21 C 1.54861 * 110.49245 * 178.75439 * 19 18 17 22 22 C 1.54480 * 101.66110 * 93.87914 * 21 19 18 23 23 N 1.46760 * 105.54782 * 25.43666 * 22 21 19 24 24 C 1.34415 * 111.30303 * 342.93897 * 23 22 21 25 25 O 1.21284 * 124.94104 * 180.39099 * 24 23 22 26 26 C 1.48569 * 105.87298 * 335.19806 * 18 17 15 27 27 C 1.54566 * 103.13383 * 39.45530 * 26 18 17 28 28 H 1.09003 * 113.40104 * 84.19137 * 27 26 18 29 29 C 1.46643 * 125.28644 * 0.02562 * 13 11 10 30 30 H 0.96999 * 119.99927 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.46835 * 59.99937 * 10 9 7 32 32 H 1.09000 * 109.46824 * 299.99801 * 10 9 7 33 33 H 1.09003 * 109.71530 * 58.40236 * 14 13 11 34 34 H 1.09006 * 109.71536 * 297.86572 * 14 13 11 35 35 H 1.08996 * 109.88461 * 351.79506 * 17 15 14 36 36 H 1.09007 * 109.88145 * 230.63205 * 17 15 14 37 37 H 1.08997 * 111.03764 * 335.78646 * 21 19 18 38 38 H 1.09000 * 110.99735 * 211.95540 * 21 19 18 39 39 H 1.09002 * 110.24746 * 266.39097 * 22 21 19 40 40 H 1.09002 * 110.24236 * 144.47820 * 22 21 19 41 41 H 0.97010 * 124.34794 * 162.95909 * 23 22 21 42 42 H 1.09003 * 110.68117 * 157.86400 * 26 18 17 43 43 H 1.08991 * 110.68375 * 281.03840 * 26 18 17 44 44 H 1.09002 * 109.91707 * 316.81547 * 29 13 11 45 45 H 1.09004 * 109.91482 * 78.10123 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0030 12 8 0.7911 -5.5023 0.0030 13 7 2.8441 -6.3431 0.0048 14 6 2.4590 -7.7565 0.0052 15 6 3.7403 -8.6063 -0.0402 16 1 3.9344 -9.1245 0.8989 17 6 3.6444 -9.5684 -1.2413 18 7 4.6477 -9.1309 -2.2350 19 6 4.1627 -9.3501 -3.6042 20 1 3.2091 -8.8444 -3.7557 21 6 5.2090 -8.8594 -4.6350 22 6 5.9941 -10.1578 -4.9253 23 7 5.0632 -11.2541 -4.6329 24 6 4.0281 -10.8300 -3.8876 25 8 3.1183 -11.5318 -3.4992 26 6 4.8735 -7.6856 -1.9752 27 6 4.8588 -7.5997 -0.4320 28 1 5.8213 -7.8322 0.0237 29 6 4.3066 -6.2362 0.0065 30 1 -0.4850 0.8400 -0.0004 31 1 3.1237 -3.7309 0.8925 32 1 3.1251 -3.7317 -0.8875 33 1 1.8447 -7.9705 -0.8694 34 1 1.8985 -7.9846 0.9118 35 1 2.6461 -9.5200 -1.6762 36 1 3.8616 -10.5867 -0.9188 37 1 5.8589 -8.0993 -4.2014 38 1 4.7237 -8.4870 -5.5371 39 1 6.8686 -10.2226 -4.2778 40 1 6.2971 -10.1893 -5.9719 41 1 5.1801 -12.1675 -4.9380 42 1 5.8396 -7.3700 -2.3692 43 1 4.0685 -7.0874 -2.4018 44 1 4.6233 -5.4643 -0.6949 45 1 4.6603 -5.9977 1.0096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717007978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:42 Heat of formation + Delta-G solvation = -48.858633 kcal Electronic energy + Delta-G solvation = -27321.954347 eV Core-core repulsion = 23465.678763 eV Total energy + Delta-G solvation = -3856.275584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32654 -40.19808 -38.38971 -36.78641 -35.58009 -32.44655 -32.36796 -31.06890 -30.24682 -28.92497 -27.38232 -26.32279 -25.49053 -23.94595 -22.35207 -21.61852 -20.52933 -20.01092 -19.38966 -17.82937 -17.73587 -17.14406 -16.76725 -16.29441 -15.73056 -15.15016 -15.00497 -14.92509 -14.81363 -14.49353 -14.19911 -13.96311 -13.79342 -13.74709 -13.22956 -13.04892 -12.76749 -12.57095 -12.53329 -12.38355 -12.36053 -11.92865 -11.73101 -11.52962 -11.30896 -11.10408 -11.05361 -11.04571 -10.96657 -10.77645 -10.13746 -9.83985 -9.51799 -9.44016 -9.07246 -8.92199 -8.48397 -8.25125 -6.52026 -6.22643 -3.93767 2.13811 2.90096 2.93848 3.03607 3.22163 3.24780 3.28147 3.56492 3.61287 3.75799 3.99785 4.10803 4.16615 4.19254 4.35155 4.45350 4.72765 4.86375 4.88923 4.95629 4.99786 5.07237 5.09757 5.12243 5.14549 5.27325 5.34866 5.39967 5.44454 5.51938 5.54044 5.64556 5.67651 5.74664 5.80339 5.89516 5.92627 6.10717 6.25401 6.42824 6.46386 6.48156 6.59739 7.57621 7.63900 7.87364 8.33609 8.53496 9.22255 10.84739 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019145 B = 0.002355 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.146205 B =11887.456538 C =12389.256214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.547 3.453 12 O -0.514 6.514 13 N -0.622 5.622 14 C 0.112 3.888 15 C -0.105 4.105 16 H 0.104 0.896 17 C 0.043 3.957 18 N -0.497 5.497 19 C 0.037 3.963 20 H 0.081 0.919 21 C -0.131 4.131 22 C 0.108 3.892 23 N -0.727 5.727 24 C 0.533 3.467 25 O -0.529 6.529 26 C 0.041 3.959 27 C -0.095 4.095 28 H 0.111 0.889 29 C 0.108 3.892 30 H 0.269 0.731 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.410 0.590 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.812 -20.828 -7.744 28.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.296 4.296 11 C 0.335 3.665 12 O -0.388 6.388 13 N -0.360 5.360 14 C -0.011 4.011 15 C -0.124 4.124 16 H 0.123 0.877 17 C -0.085 4.085 18 N -0.223 5.223 19 C -0.075 4.075 20 H 0.099 0.901 21 C -0.169 4.169 22 C -0.016 4.016 23 N -0.383 5.383 24 C 0.318 3.682 25 O -0.403 6.403 26 C -0.087 4.087 27 C -0.114 4.114 28 H 0.129 0.871 29 C -0.016 4.016 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.249 0.751 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.752 -21.499 -7.476 27.681 hybrid contribution 1.368 1.307 -0.295 1.915 sum 17.121 -20.192 -7.772 27.591 Atomic orbital electron populations 1.70011 1.05959 1.27589 1.46702 1.24996 0.95033 0.99029 0.94531 0.86220 0.79232 0.81229 0.78790 1.19942 1.20808 1.19919 1.22808 0.94836 0.91590 1.59132 0.90978 1.85435 1.04930 0.96341 1.96716 1.23503 1.06458 0.94914 1.04752 1.20046 0.85684 0.85449 0.75308 1.90719 1.14959 1.85138 1.47944 1.48200 1.06411 1.05562 1.75798 1.21915 0.95990 0.80776 1.02445 1.22919 0.94449 0.95696 0.99377 0.87750 1.23067 0.94756 0.99311 0.91319 1.64807 1.40818 1.16429 1.00251 1.22609 0.99187 0.94451 0.91250 0.90121 1.22790 0.97755 0.97655 0.98662 1.22012 0.92656 0.85646 1.01325 1.46125 1.24710 1.12631 1.54837 1.20569 0.81067 0.89701 0.76892 1.90770 1.34652 1.61774 1.53135 1.23322 1.02069 0.88053 0.95220 1.22814 0.99299 0.93969 0.95357 0.87134 1.21816 0.80735 0.97248 1.01838 0.92107 0.89253 0.89358 0.91577 0.91434 0.92183 0.89801 0.88265 0.89430 0.90523 0.90353 0.75120 0.89134 0.92454 0.90313 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.14 9.50 30.94 0.29 -14.84 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -2.95 5.19 36.00 0.19 -2.77 16 11 C 0.55 10.55 7.85 -10.99 -0.09 10.47 16 12 O -0.51 -12.10 16.17 5.56 0.09 -12.01 16 13 N -0.62 -8.84 3.31 -172.76 -0.57 -9.42 16 14 C 0.11 1.39 6.33 -3.62 -0.02 1.37 16 15 C -0.10 -0.93 4.09 -88.25 -0.36 -1.29 16 16 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 17 C 0.04 0.41 5.38 -2.69 -0.01 0.40 16 18 N -0.50 -4.17 5.11 -222.51 -1.14 -5.31 16 19 C 0.04 0.31 2.33 -67.60 -0.16 0.15 16 20 H 0.08 0.78 8.02 -51.93 -0.42 0.36 16 21 C -0.13 -0.66 6.68 -24.97 -0.17 -0.83 16 22 C 0.11 0.45 7.78 -3.12 -0.02 0.42 16 23 N -0.73 -4.84 6.24 -59.20 -0.37 -5.21 16 24 C 0.53 5.43 7.59 -10.86 -0.08 5.35 16 25 O -0.53 -7.55 17.60 5.55 0.10 -7.45 16 26 C 0.04 0.31 4.95 -2.08 -0.01 0.30 16 27 C -0.09 -0.73 4.09 -88.21 -0.36 -1.09 16 28 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 29 C 0.11 1.08 5.86 -3.70 -0.02 1.06 16 30 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 32 H 0.09 1.64 7.88 -51.92 -0.41 1.23 16 33 H 0.07 0.90 6.95 -51.93 -0.36 0.54 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.68 6.51 -51.93 -0.34 0.34 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 0.42 6.34 -51.93 -0.33 0.09 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 41 H 0.41 2.13 8.96 -40.82 -0.37 1.76 16 42 H 0.09 0.52 7.12 -51.93 -0.37 0.15 16 43 H 0.06 0.54 7.81 -51.93 -0.41 0.14 16 44 H 0.08 0.76 7.45 -51.93 -0.39 0.37 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -37.01 372.66 -10.43 -47.44 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.73 Total: -1.28 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -0.92 Total: 0.68 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -1.34 Total: -45.32 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.19 Total: -19.45 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.01 -10.43 -47.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717007978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.415 kcal (2) G-P(sol) polarization free energy of solvation -37.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds