Wall clock time and date at job start Tue Mar 31 2020 22:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86795 * 119.99880 * 2 1 4 4 H 1.48504 * 109.46920 * 239.99688 * 3 2 1 5 5 H 1.48503 * 109.47106 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47250 * 119.99821 * 3 2 1 7 7 C 1.38796 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99441 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00467 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00025 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47027 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00035 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00217 * 180.02562 * 11 10 9 14 14 C 1.46488 * 125.29053 * 180.02562 * 13 11 10 15 15 C 1.53814 * 108.30651 * 178.13298 * 14 13 11 16 16 H 1.09004 * 112.68132 * 109.40256 * 15 14 13 17 17 C 1.54185 * 108.41782 * 234.82654 * 15 14 13 18 18 N 1.47829 * 107.26331 * 111.21725 * 17 15 14 19 19 C 1.46900 * 110.99662 * 214.65524 * 18 17 15 20 20 H 1.08998 * 110.43317 * 56.08699 * 19 18 17 21 21 C 1.54861 * 110.49245 * 178.75439 * 19 18 17 22 22 C 1.54480 * 101.66110 * 93.87914 * 21 19 18 23 23 N 1.46760 * 105.54782 * 25.43666 * 22 21 19 24 24 C 1.34415 * 111.30303 * 342.93897 * 23 22 21 25 25 O 1.21284 * 124.94104 * 180.39099 * 24 23 22 26 26 C 1.48569 * 105.87298 * 335.19806 * 18 17 15 27 27 C 1.54566 * 103.13383 * 39.45530 * 26 18 17 28 28 H 1.09003 * 113.40104 * 84.19137 * 27 26 18 29 29 C 1.46643 * 125.28644 * 0.02562 * 13 11 10 30 30 H 0.96999 * 119.99927 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.46835 * 59.99937 * 10 9 7 32 32 H 1.09000 * 109.46824 * 299.99801 * 10 9 7 33 33 H 1.09003 * 109.71530 * 58.40236 * 14 13 11 34 34 H 1.09006 * 109.71536 * 297.86572 * 14 13 11 35 35 H 1.08996 * 109.88461 * 351.79506 * 17 15 14 36 36 H 1.09007 * 109.88145 * 230.63205 * 17 15 14 37 37 H 1.08997 * 111.03764 * 335.78646 * 21 19 18 38 38 H 1.09000 * 110.99735 * 211.95540 * 21 19 18 39 39 H 1.09002 * 110.24746 * 266.39097 * 22 21 19 40 40 H 1.09002 * 110.24236 * 144.47820 * 22 21 19 41 41 H 0.97010 * 124.34794 * 162.95909 * 23 22 21 42 42 H 1.09003 * 110.68117 * 157.86400 * 26 18 17 43 43 H 1.08991 * 110.68375 * 281.03840 * 26 18 17 44 44 H 1.09002 * 109.91707 * 316.81547 * 29 13 11 45 45 H 1.09004 * 109.91482 * 78.10123 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0030 12 8 0.7911 -5.5023 0.0030 13 7 2.8441 -6.3431 0.0048 14 6 2.4590 -7.7565 0.0052 15 6 3.7403 -8.6063 -0.0402 16 1 3.9344 -9.1245 0.8989 17 6 3.6444 -9.5684 -1.2413 18 7 4.6477 -9.1309 -2.2350 19 6 4.1627 -9.3501 -3.6042 20 1 3.2091 -8.8444 -3.7557 21 6 5.2090 -8.8594 -4.6350 22 6 5.9941 -10.1578 -4.9253 23 7 5.0632 -11.2541 -4.6329 24 6 4.0281 -10.8300 -3.8876 25 8 3.1183 -11.5318 -3.4992 26 6 4.8735 -7.6856 -1.9752 27 6 4.8588 -7.5997 -0.4320 28 1 5.8213 -7.8322 0.0237 29 6 4.3066 -6.2362 0.0065 30 1 -0.4850 0.8400 -0.0004 31 1 3.1237 -3.7309 0.8925 32 1 3.1251 -3.7317 -0.8875 33 1 1.8447 -7.9705 -0.8694 34 1 1.8985 -7.9846 0.9118 35 1 2.6461 -9.5200 -1.6762 36 1 3.8616 -10.5867 -0.9188 37 1 5.8589 -8.0993 -4.2014 38 1 4.7237 -8.4870 -5.5371 39 1 6.8686 -10.2226 -4.2778 40 1 6.2971 -10.1893 -5.9719 41 1 5.1801 -12.1675 -4.9380 42 1 5.8396 -7.3700 -2.3692 43 1 4.0685 -7.0874 -2.4018 44 1 4.6233 -5.4643 -0.6949 45 1 4.6603 -5.9977 1.0096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717007978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:41 Heat of formation + Delta-G solvation = -78.747202 kcal Electronic energy + Delta-G solvation = -27323.250413 eV Core-core repulsion = 23465.678763 eV Total energy + Delta-G solvation = -3857.571650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.11066 -41.12960 -39.64191 -37.59699 -36.53715 -34.58256 -33.31735 -31.91464 -31.22408 -30.03197 -28.08506 -27.70654 -27.10579 -24.92341 -22.94067 -22.33900 -21.29241 -20.81503 -20.66873 -19.59026 -18.45408 -18.19788 -17.75130 -17.39622 -16.87843 -16.59761 -16.53449 -15.99426 -15.78748 -15.58718 -15.18268 -15.08409 -14.63924 -14.54567 -14.51319 -14.16475 -13.98212 -13.58405 -13.43846 -13.40778 -13.19400 -13.14937 -12.87588 -12.83807 -12.63656 -12.42750 -12.12245 -12.07659 -11.87330 -11.72893 -11.65663 -11.12139 -11.01949 -10.92214 -10.28313 -10.09301 -9.79561 -9.55917 -8.69041 -8.33977 -6.13446 1.23328 1.37827 1.45267 1.45560 1.51935 1.55817 2.07012 2.27820 2.37429 2.88978 3.00224 3.10145 3.23801 3.40074 3.42784 3.48338 3.61480 3.86774 3.98775 4.07082 4.13087 4.22445 4.25550 4.29677 4.42817 4.44336 4.47124 4.61032 4.64078 4.66093 4.77178 4.78952 4.80444 4.92266 5.02672 5.08134 5.10752 5.18131 5.37393 5.41870 5.60898 5.76146 5.87922 5.97745 6.20040 6.34758 7.06676 7.07499 7.19652 8.75136 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019145 B = 0.002355 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.146205 B =11887.456538 C =12389.256214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.086 0.914 9 S -0.158 6.158 10 C -0.116 4.116 11 C 0.543 3.457 12 O -0.571 6.571 13 N -0.611 5.611 14 C 0.109 3.891 15 C -0.092 4.092 16 H 0.127 0.873 17 C 0.046 3.954 18 N -0.488 5.488 19 C 0.033 3.967 20 H 0.057 0.943 21 C -0.124 4.124 22 C 0.107 3.893 23 N -0.715 5.715 24 C 0.522 3.478 25 O -0.583 6.583 26 C 0.040 3.960 27 C -0.079 4.079 28 H 0.147 0.853 29 C 0.096 3.904 30 H 0.271 0.729 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.044 0.956 34 H 0.059 0.941 35 H 0.031 0.969 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.417 0.583 42 H 0.123 0.877 43 H 0.035 0.965 44 H 0.090 0.910 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.824 -20.492 -8.148 31.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.691 4.691 8 H 0.104 0.896 9 S 0.070 5.930 10 C -0.267 4.267 11 C 0.332 3.668 12 O -0.449 6.449 13 N -0.345 5.345 14 C -0.014 4.014 15 C -0.111 4.111 16 H 0.145 0.855 17 C -0.082 4.082 18 N -0.213 5.213 19 C -0.079 4.079 20 H 0.075 0.925 21 C -0.161 4.161 22 C -0.016 4.016 23 N -0.369 5.369 24 C 0.307 3.693 25 O -0.462 6.462 26 C -0.087 4.087 27 C -0.099 4.099 28 H 0.164 0.836 29 C -0.026 4.026 30 H 0.080 0.920 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.098 0.902 37 H 0.135 0.865 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.124 0.876 41 H 0.257 0.743 42 H 0.141 0.859 43 H 0.053 0.947 44 H 0.108 0.892 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 20.873 -21.197 -7.909 30.782 hybrid contribution -0.141 1.041 -0.215 1.072 sum 20.732 -20.156 -8.124 30.035 Atomic orbital electron populations 1.70193 1.08094 1.28685 1.47990 1.26175 0.95967 1.03456 0.93707 0.84974 0.77758 0.75449 0.79631 1.18414 1.20618 1.18510 1.23150 0.95376 0.91633 1.58938 0.89603 1.85689 1.10760 0.99531 1.97060 1.23281 1.03313 0.93413 1.06654 1.19889 0.85396 0.86152 0.75407 1.90697 1.17382 1.85854 1.51012 1.48131 1.08133 1.05112 1.73163 1.22042 0.97945 0.80355 1.01090 1.22901 0.92928 0.95241 1.00075 0.85507 1.22965 0.93822 0.99449 0.91966 1.64865 1.39657 1.16937 0.99875 1.22640 0.99575 0.93378 0.92301 0.92483 1.22862 0.96907 0.98573 0.97787 1.22270 0.92027 0.83889 1.03414 1.46196 1.23911 1.13776 1.53049 1.20941 0.81099 0.90311 0.76945 1.90733 1.36886 1.63112 1.55512 1.23438 1.02882 0.87063 0.95347 1.22899 0.99926 0.91671 0.95357 0.83551 1.22223 0.77621 0.99206 1.03508 0.92027 0.87202 0.87158 0.93754 0.92238 0.95040 0.90169 0.86525 0.88714 0.89089 0.87555 0.74315 0.85926 0.94673 0.89166 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16 2 C 0.01 0.65 5.49 84.86 0.47 1.12 16 3 Si 1.00 42.98 29.55 68.60 2.03 45.00 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 7 C -0.54 -30.73 9.50 67.95 0.65 -30.09 16 8 H 0.09 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.16 -8.84 20.57 -56.49 -1.16 -10.01 16 10 C -0.12 -4.62 5.19 71.23 0.37 -4.25 16 11 C 0.54 21.26 7.85 87.66 0.69 21.95 16 12 O -0.57 -28.33 16.17 -3.04 -0.05 -28.38 16 13 N -0.61 -16.91 3.31 -818.89 -2.71 -19.62 16 14 C 0.11 2.74 6.33 86.66 0.55 3.28 16 15 C -0.09 -1.47 4.09 -9.26 -0.04 -1.51 16 16 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 17 C 0.05 0.88 5.38 86.53 0.47 1.35 16 18 N -0.49 -7.35 5.11 -857.90 -4.39 -11.74 16 19 C 0.03 0.54 2.33 44.99 0.11 0.65 16 20 H 0.06 1.19 8.02 -2.39 -0.02 1.17 16 21 C -0.12 -0.91 6.68 31.73 0.21 -0.70 16 22 C 0.11 0.52 7.78 86.83 0.68 1.20 16 23 N -0.72 -8.38 6.24 -459.81 -2.87 -11.25 16 24 C 0.52 10.68 7.59 87.90 0.67 11.34 16 25 O -0.58 -17.65 17.60 -3.04 -0.05 -17.71 16 26 C 0.04 0.48 4.95 86.51 0.43 0.91 16 27 C -0.08 -0.92 4.09 -9.23 -0.04 -0.96 16 28 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 29 C 0.10 1.61 5.86 86.52 0.51 2.12 16 30 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 32 H 0.11 3.90 7.88 -2.39 -0.02 3.88 16 33 H 0.04 1.32 6.95 -2.39 -0.02 1.30 16 34 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.03 0.78 6.51 -2.39 -0.02 0.77 16 36 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.12 0.48 6.34 -2.39 -0.02 0.46 16 38 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 41 H 0.42 3.74 8.96 -92.70 -0.83 2.90 16 42 H 0.12 0.78 7.12 -2.39 -0.02 0.76 16 43 H 0.03 0.61 7.81 -2.39 -0.02 0.59 16 44 H 0.09 1.37 7.45 -2.39 -0.02 1.36 16 45 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -87.12 372.66 -3.03 -90.15 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.18 Total: 13.12 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 5.70 Total: 6.41 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -9.68 Total: -98.59 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -0.10 Total: -46.08 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.01 kcal Total: -87.12 -3.03 -90.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717007978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.402 kcal (2) G-P(sol) polarization free energy of solvation -87.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds