Wall clock time and date at job start Tue Mar 31 2020 22:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00214 * 2 1 4 4 H 1.48503 * 109.47260 * 270.00025 * 3 2 1 5 5 H 1.48501 * 109.47115 * 29.99920 * 3 2 1 6 6 H 1.48498 * 109.47299 * 150.00396 * 3 2 1 7 7 C 1.38818 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99507 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00045 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47492 * 175.02221 * 10 9 7 12 12 N 1.46503 * 109.54428 * 305.58278 * 11 10 9 13 13 C 1.34777 * 119.99819 * 304.09331 * 12 11 10 14 14 O 1.21278 * 119.99731 * 354.69182 * 13 12 11 15 15 C 1.50694 * 119.99777 * 174.69777 * 13 12 11 16 16 C 1.53002 * 109.46994 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47036 * 179.97438 * 16 15 13 18 18 C 1.33649 * 126.03433 * 90.00196 * 17 16 15 19 19 N 1.31783 * 114.49774 * 180.02562 * 18 17 16 20 20 C 1.29030 * 117.12592 * 359.97438 * 19 18 17 21 21 S 1.70970 * 110.16621 * 359.72681 * 20 19 18 22 22 C 1.53184 * 109.53959 * 65.75809 * 11 10 9 23 23 C 1.53281 * 109.05985 * 176.85672 * 22 11 10 24 24 O 1.42908 * 109.45801 * 302.44083 * 23 22 11 25 25 C 1.42902 * 114.09634 * 61.16646 * 24 23 22 26 26 C 1.53096 * 109.41014 * 298.83686 * 25 24 23 27 27 H 0.96997 * 119.99497 * 359.97438 * 1 2 3 28 28 H 0.97006 * 119.99844 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47399 * 55.01869 * 10 9 7 30 30 H 1.09004 * 109.47069 * 295.02594 * 10 9 7 31 31 H 0.97001 * 120.00141 * 124.08528 * 12 11 10 32 32 H 1.08993 * 109.47651 * 59.99094 * 15 13 12 33 33 H 1.09000 * 109.47041 * 299.99028 * 15 13 12 34 34 H 1.08997 * 109.46959 * 300.00019 * 16 15 13 35 35 H 1.09002 * 109.47349 * 59.99833 * 16 15 13 36 36 H 1.08000 * 122.74834 * 0.02562 * 18 17 16 37 37 H 1.07999 * 124.91662 * 180.02562 * 20 19 18 38 38 H 1.08995 * 109.52098 * 296.84163 * 22 11 10 39 39 H 1.08999 * 109.51884 * 57.03360 * 22 11 10 40 40 H 1.09000 * 109.45596 * 182.45051 * 23 22 11 41 41 H 1.08992 * 109.47124 * 62.44844 * 23 22 11 42 42 H 1.08994 * 109.47842 * 178.85687 * 25 24 23 43 43 H 1.09002 * 109.49267 * 58.82803 * 25 24 23 44 44 H 1.08996 * 109.52500 * 297.70294 * 26 25 24 45 45 H 1.09004 * 109.56632 * 177.54750 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2023 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0684 -4.8170 0.1246 12 7 0.2261 -4.6174 1.3065 13 6 0.7930 -4.4544 2.5183 14 8 1.9936 -4.5687 2.6464 15 6 -0.0649 -4.1304 3.7141 16 6 0.8195 -3.9990 4.9557 17 6 -0.0383 -3.6743 6.1514 18 6 -0.6082 -4.5601 6.9740 19 7 -1.3138 -4.0246 7.9497 20 6 -1.3705 -2.7364 7.9962 21 16 -0.4608 -2.0597 6.7165 22 6 0.1882 -4.8771 -1.1277 23 6 -0.7446 -6.0891 -1.0262 24 8 0.0340 -7.2774 -0.8709 25 6 0.8415 -7.2958 0.3079 26 6 1.8379 -6.1345 0.2603 27 1 -0.4849 0.8401 0.0004 28 1 0.3554 -2.3881 0.0002 29 1 2.7498 -3.6770 0.8415 30 1 2.6161 -3.7542 -0.9318 31 1 -0.7397 -4.6025 1.2169 32 1 -0.7904 -4.9290 3.8680 33 1 -0.5900 -3.1910 3.5407 34 1 1.3444 -4.9384 5.1290 35 1 1.5453 -3.2003 4.8020 36 1 -0.4993 -5.6274 6.8494 37 1 -1.9102 -2.1678 8.7391 38 1 -0.4034 -3.9646 -1.2012 39 1 0.8186 -4.9759 -2.0114 40 1 -1.3437 -6.1632 -1.9338 41 1 -1.4023 -5.9703 -0.1652 42 1 1.3850 -8.2391 0.3614 43 1 0.2048 -7.1928 1.1867 44 1 2.5014 -6.2586 -0.5955 45 1 2.4258 -6.1200 1.1781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717266826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:10 Heat of formation + Delta-G solvation = -28.985424 kcal Electronic energy + Delta-G solvation = -28056.375116 eV Core-core repulsion = 24200.961299 eV Total energy + Delta-G solvation = -3855.413817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.51978 -39.70758 -38.42479 -35.87013 -34.08289 -33.67107 -31.75388 -31.06279 -30.42229 -29.25786 -26.61345 -25.88752 -23.78422 -23.67863 -23.16536 -21.50291 -20.60422 -20.05679 -19.01419 -18.13668 -17.26349 -17.08611 -16.05119 -15.94283 -15.70337 -15.46972 -15.09004 -14.62124 -14.57281 -14.30987 -14.06266 -13.94659 -13.64007 -13.27898 -13.07310 -12.80969 -12.74389 -12.38831 -12.20131 -12.14563 -11.89084 -11.61424 -11.52688 -11.19839 -10.92753 -10.88314 -10.83011 -10.52291 -10.33481 -10.08621 -9.75860 -9.72679 -9.56351 -9.39985 -9.23213 -9.00759 -8.80657 -8.57073 -6.88826 -5.77770 -3.03938 0.60103 1.27528 1.68866 2.71499 3.00269 3.42329 3.47130 3.48685 3.50240 3.93865 4.23380 4.58201 4.66917 4.83509 4.97570 4.98547 5.01739 5.07418 5.12463 5.13607 5.21694 5.36415 5.40317 5.43497 5.57525 5.59949 5.73342 5.76440 5.92715 5.95370 6.00227 6.04695 6.09031 6.13346 6.23470 6.29564 6.45329 6.53467 6.85709 7.05008 7.24361 7.57027 7.71489 7.85128 8.41901 8.59859 9.53604 10.10592 10.46644 11.45370 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007158 B = 0.004546 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3910.519809 B = 6157.546300 C = 9287.813620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.014 4.014 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.230 4.230 8 H 0.068 0.932 9 N -0.724 5.724 10 C 0.142 3.858 11 C 0.175 3.825 12 N -0.714 5.714 13 C 0.528 3.472 14 O -0.534 6.534 15 C -0.136 4.136 16 C -0.026 4.026 17 C -0.206 4.206 18 C 0.024 3.976 19 N -0.473 5.473 20 C 0.003 3.997 21 S 0.138 5.862 22 C -0.155 4.155 23 C 0.061 3.939 24 O -0.386 6.386 25 C 0.067 3.933 26 C -0.163 4.163 27 H 0.253 0.747 28 H 0.381 0.619 29 H 0.050 0.950 30 H 0.019 0.981 31 H 0.395 0.605 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.174 0.826 37 H 0.196 0.804 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.046 0.954 42 H 0.088 0.912 43 H 0.047 0.953 44 H 0.076 0.924 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.383 -11.990 8.906 15.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.210 4.210 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.361 4.361 8 H 0.086 0.914 9 N -0.369 5.369 10 C 0.014 3.986 11 C 0.089 3.911 12 N -0.366 5.366 13 C 0.314 3.686 14 O -0.411 6.411 15 C -0.177 4.177 16 C -0.066 4.066 17 C -0.327 4.327 18 C -0.127 4.127 19 N -0.186 5.186 20 C -0.294 4.294 21 S 0.390 5.610 22 C -0.193 4.193 23 C -0.016 4.016 24 O -0.305 6.305 25 C -0.010 4.010 26 C -0.202 4.202 27 H 0.063 0.937 28 H 0.215 0.785 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.229 0.771 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.191 0.809 37 H 0.213 0.787 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.468 -11.354 9.007 14.902 hybrid contribution -0.370 0.568 0.055 0.680 sum -3.838 -10.785 9.063 14.601 Atomic orbital electron populations 1.69641 1.04995 1.25444 1.58526 1.24658 0.95497 0.97438 1.03384 0.86226 0.78738 0.84009 0.77496 1.21822 1.21843 1.20843 1.19224 0.91014 0.84154 1.41729 0.91414 1.42197 1.05542 0.99687 1.89433 1.21074 0.93537 0.84993 0.99013 1.20559 0.91330 0.95239 0.83972 1.45932 1.09685 1.74128 1.06836 1.20235 0.88627 0.75733 0.83984 1.90629 1.15038 1.50161 1.85251 1.21669 0.98918 1.04331 0.92784 1.19770 0.95222 1.04178 0.87473 1.26134 1.07305 0.94976 1.04331 1.21751 0.97757 1.01435 0.91782 1.66323 1.18755 1.10552 1.22992 1.28345 1.04352 0.93548 1.03172 1.84441 1.44294 1.09121 1.23132 1.22475 0.99533 0.99350 0.97950 1.22631 0.92783 0.84750 1.01397 1.87898 1.59477 1.39159 1.43952 1.22504 0.92496 0.98646 0.87375 1.22551 0.98972 0.94064 1.04591 0.93702 0.78504 0.93222 0.96334 0.77141 0.89262 0.88322 0.88983 0.89264 0.80896 0.78706 0.89192 0.89596 0.88852 0.93563 0.89350 0.93513 0.90523 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.34 13.06 55.49 0.72 -26.62 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.90 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.23 -6.38 9.99 -15.06 -0.15 -6.53 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.72 -17.60 5.21 -59.91 -0.31 -17.91 16 10 C 0.14 2.90 4.79 -4.05 -0.02 2.88 16 11 C 0.17 2.71 0.32 -131.63 -0.04 2.67 16 12 N -0.71 -10.21 3.75 -47.44 -0.18 -10.39 16 13 C 0.53 8.09 7.24 -10.99 -0.08 8.01 16 14 O -0.53 -9.79 12.29 5.56 0.07 -9.72 16 15 C -0.14 -1.67 5.68 -27.88 -0.16 -1.83 16 16 C -0.03 -0.32 5.04 -27.88 -0.14 -0.46 16 17 C -0.21 -2.38 5.85 -35.92 -0.21 -2.59 16 18 C 0.02 0.27 11.25 -19.18 -0.22 0.05 16 19 N -0.47 -5.73 10.54 -15.75 -0.17 -5.90 16 20 C 0.00 0.03 12.23 51.59 0.63 0.66 16 21 S 0.14 1.52 23.22 -107.50 -2.50 -0.98 16 22 C -0.15 -2.20 4.84 -26.49 -0.13 -2.32 16 23 C 0.06 0.72 6.67 37.30 0.25 0.97 16 24 O -0.39 -5.08 10.77 -35.23 -0.38 -5.46 16 25 C 0.07 0.81 6.68 37.21 0.25 1.05 16 26 C -0.16 -2.28 4.82 -26.59 -0.13 -2.40 16 27 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.38 9.45 6.51 -40.82 -0.27 9.18 16 29 H 0.05 1.13 6.25 -51.93 -0.32 0.80 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.39 4.83 7.41 -40.82 -0.30 4.53 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 35 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 36 H 0.17 1.59 8.06 -52.49 -0.42 1.16 16 37 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.09 1.41 7.22 -51.93 -0.37 1.04 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.49 7.01 -51.93 -0.36 0.12 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.54 7.75 -51.93 -0.40 0.14 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.09 1.44 6.26 -51.93 -0.32 1.12 16 LS Contribution 374.47 15.07 5.64 5.64 Total: -1.00 -32.87 374.47 -8.91 -41.79 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -6.55 Total: 12.52 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -0.24 Total: -0.34 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: 0.07 Total: -60.82 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.31 Total: -15.19 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.50 Total: -0.98 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.87 -8.91 -41.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717266826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.800 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds