Wall clock time and date at job start Tue Mar 31 2020 22:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00214 * 2 1 4 4 H 1.48503 * 109.47260 * 270.00025 * 3 2 1 5 5 H 1.48501 * 109.47115 * 29.99920 * 3 2 1 6 6 H 1.48498 * 109.47299 * 150.00396 * 3 2 1 7 7 C 1.38818 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99507 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00045 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47492 * 175.02221 * 10 9 7 12 12 N 1.46503 * 109.54428 * 305.58278 * 11 10 9 13 13 C 1.34777 * 119.99819 * 304.09331 * 12 11 10 14 14 O 1.21278 * 119.99731 * 354.69182 * 13 12 11 15 15 C 1.50694 * 119.99777 * 174.69777 * 13 12 11 16 16 C 1.53002 * 109.46994 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47036 * 179.97438 * 16 15 13 18 18 C 1.33649 * 126.03433 * 90.00196 * 17 16 15 19 19 N 1.31783 * 114.49774 * 180.02562 * 18 17 16 20 20 C 1.29030 * 117.12592 * 359.97438 * 19 18 17 21 21 S 1.70970 * 110.16621 * 359.72681 * 20 19 18 22 22 C 1.53184 * 109.53959 * 65.75809 * 11 10 9 23 23 C 1.53281 * 109.05985 * 176.85672 * 22 11 10 24 24 O 1.42908 * 109.45801 * 302.44083 * 23 22 11 25 25 C 1.42902 * 114.09634 * 61.16646 * 24 23 22 26 26 C 1.53096 * 109.41014 * 298.83686 * 25 24 23 27 27 H 0.96997 * 119.99497 * 359.97438 * 1 2 3 28 28 H 0.97006 * 119.99844 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47399 * 55.01869 * 10 9 7 30 30 H 1.09004 * 109.47069 * 295.02594 * 10 9 7 31 31 H 0.97001 * 120.00141 * 124.08528 * 12 11 10 32 32 H 1.08993 * 109.47651 * 59.99094 * 15 13 12 33 33 H 1.09000 * 109.47041 * 299.99028 * 15 13 12 34 34 H 1.08997 * 109.46959 * 300.00019 * 16 15 13 35 35 H 1.09002 * 109.47349 * 59.99833 * 16 15 13 36 36 H 1.08000 * 122.74834 * 0.02562 * 18 17 16 37 37 H 1.07999 * 124.91662 * 180.02562 * 20 19 18 38 38 H 1.08995 * 109.52098 * 296.84163 * 22 11 10 39 39 H 1.08999 * 109.51884 * 57.03360 * 22 11 10 40 40 H 1.09000 * 109.45596 * 182.45051 * 23 22 11 41 41 H 1.08992 * 109.47124 * 62.44844 * 23 22 11 42 42 H 1.08994 * 109.47842 * 178.85687 * 25 24 23 43 43 H 1.09002 * 109.49267 * 58.82803 * 25 24 23 44 44 H 1.08996 * 109.52500 * 297.70294 * 26 25 24 45 45 H 1.09004 * 109.56632 * 177.54750 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2023 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0684 -4.8170 0.1246 12 7 0.2261 -4.6174 1.3065 13 6 0.7930 -4.4544 2.5183 14 8 1.9936 -4.5687 2.6464 15 6 -0.0649 -4.1304 3.7141 16 6 0.8195 -3.9990 4.9557 17 6 -0.0383 -3.6743 6.1514 18 6 -0.6082 -4.5601 6.9740 19 7 -1.3138 -4.0246 7.9497 20 6 -1.3705 -2.7364 7.9962 21 16 -0.4608 -2.0597 6.7165 22 6 0.1882 -4.8771 -1.1277 23 6 -0.7446 -6.0891 -1.0262 24 8 0.0340 -7.2774 -0.8709 25 6 0.8415 -7.2958 0.3079 26 6 1.8379 -6.1345 0.2603 27 1 -0.4849 0.8401 0.0004 28 1 0.3554 -2.3881 0.0002 29 1 2.7498 -3.6770 0.8415 30 1 2.6161 -3.7542 -0.9318 31 1 -0.7397 -4.6025 1.2169 32 1 -0.7904 -4.9290 3.8680 33 1 -0.5900 -3.1910 3.5407 34 1 1.3444 -4.9384 5.1290 35 1 1.5453 -3.2003 4.8020 36 1 -0.4993 -5.6274 6.8494 37 1 -1.9102 -2.1678 8.7391 38 1 -0.4034 -3.9646 -1.2012 39 1 0.8186 -4.9759 -2.0114 40 1 -1.3437 -6.1632 -1.9338 41 1 -1.4023 -5.9703 -0.1652 42 1 1.3850 -8.2391 0.3614 43 1 0.2048 -7.1928 1.1867 44 1 2.5014 -6.2586 -0.5955 45 1 2.4258 -6.1200 1.1781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717266826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:09 Heat of formation + Delta-G solvation = -51.781825 kcal Electronic energy + Delta-G solvation = -28057.363642 eV Core-core repulsion = 24200.961299 eV Total energy + Delta-G solvation = -3856.402343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.73341 -40.57821 -39.55433 -37.27104 -35.47664 -35.10073 -33.20799 -32.27933 -32.00748 -30.19799 -28.18167 -26.87424 -25.42202 -24.74659 -24.30720 -23.00865 -21.71357 -20.91775 -20.29624 -19.25912 -19.04211 -18.24297 -17.17374 -17.00558 -16.84119 -16.71085 -16.32950 -16.13300 -15.59659 -15.54346 -15.33304 -14.95741 -14.90447 -14.83988 -14.48068 -14.16399 -13.86359 -13.70667 -13.39411 -13.16650 -13.15362 -13.02409 -12.80679 -12.78605 -12.57454 -12.29632 -12.12443 -11.95702 -11.84105 -11.63611 -11.35390 -11.01068 -10.68107 -10.60051 -10.46929 -10.19542 -9.88797 -9.83595 -8.94875 -7.95754 -5.21315 -0.24310 0.42848 0.84823 1.44809 1.44897 1.53488 1.76584 1.86975 2.30578 2.54638 2.98024 3.37105 3.45551 3.57961 3.72764 3.81344 3.88341 3.99090 4.01917 4.03969 4.24577 4.27277 4.32094 4.41275 4.48207 4.50923 4.60292 4.70869 4.77515 4.81918 4.87726 4.88667 5.00099 5.05553 5.10292 5.13565 5.16851 5.23072 5.25062 5.47173 5.69554 6.26603 6.27144 6.68011 6.72522 7.35108 7.40390 8.08330 8.37766 9.26857 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007158 B = 0.004546 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3910.519809 B = 6157.546300 C = 9287.813620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.063 4.063 3 Si 0.963 3.037 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.243 4.243 8 H 0.060 0.940 9 N -0.726 5.726 10 C 0.144 3.856 11 C 0.181 3.819 12 N -0.707 5.707 13 C 0.520 3.480 14 O -0.568 6.568 15 C -0.127 4.127 16 C -0.017 4.017 17 C -0.218 4.218 18 C 0.028 3.972 19 N -0.498 5.498 20 C 0.020 3.980 21 S 0.116 5.884 22 C -0.149 4.149 23 C 0.066 3.934 24 O -0.393 6.393 25 C 0.072 3.928 26 C -0.156 4.156 27 H 0.251 0.749 28 H 0.378 0.622 29 H 0.025 0.975 30 H 0.012 0.988 31 H 0.407 0.593 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.193 0.807 37 H 0.228 0.772 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.664 -13.072 9.530 17.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.256 4.256 3 Si 0.792 3.208 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.078 0.922 9 N -0.369 5.369 10 C 0.016 3.984 11 C 0.095 3.905 12 N -0.359 5.359 13 C 0.308 3.692 14 O -0.447 6.447 15 C -0.167 4.167 16 C -0.057 4.057 17 C -0.339 4.339 18 C -0.123 4.123 19 N -0.211 5.211 20 C -0.277 4.277 21 S 0.369 5.631 22 C -0.187 4.187 23 C -0.011 4.011 24 O -0.312 6.312 25 C -0.005 4.005 26 C -0.195 4.195 27 H 0.060 0.940 28 H 0.212 0.788 29 H 0.043 0.957 30 H 0.030 0.970 31 H 0.243 0.757 32 H 0.142 0.858 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.210 0.790 37 H 0.244 0.756 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.125 0.875 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.756 -12.460 9.620 16.444 hybrid contribution 0.074 0.918 -0.116 0.928 sum -4.682 -11.542 9.504 15.667 Atomic orbital electron populations 1.69757 1.05988 1.25877 1.59424 1.25323 0.96360 1.00179 1.03726 0.85307 0.77675 0.80358 0.77432 1.21396 1.21748 1.20462 1.19476 0.90978 0.85716 1.41296 0.92213 1.42222 1.05413 1.00152 1.89137 1.21098 0.94330 0.85520 0.97420 1.20381 0.90971 0.93900 0.85277 1.45872 1.10236 1.73602 1.06232 1.20813 0.88544 0.74955 0.84866 1.90619 1.16648 1.51628 1.85827 1.21639 0.98832 1.04912 0.91323 1.19597 0.94793 1.03441 0.87901 1.25984 1.08209 0.95169 1.04583 1.22049 0.96842 1.02313 0.91072 1.66398 1.19768 1.11313 1.23623 1.28901 1.02953 0.93174 1.02669 1.84550 1.44938 1.09553 1.24057 1.22395 0.99437 1.00121 0.96724 1.22696 0.92156 0.83003 1.03215 1.87903 1.59607 1.39373 1.44353 1.22536 0.92103 0.98330 0.87490 1.22469 0.99253 0.94004 1.03768 0.93978 0.78847 0.95665 0.97009 0.75708 0.85807 0.89321 0.88278 0.92153 0.79036 0.75579 0.90787 0.90300 0.86985 0.91767 0.87475 0.92554 0.90712 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.41 13.06 21.65 0.28 -56.13 16 2 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 3 Si 0.96 46.37 29.55 68.60 2.03 48.39 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 7 C -0.24 -13.73 9.99 84.04 0.84 -12.89 16 8 H 0.06 3.41 7.83 -2.91 -0.02 3.38 16 9 N -0.73 -36.10 5.21 -343.46 -1.79 -37.89 16 10 C 0.14 6.06 4.79 86.38 0.41 6.47 16 11 C 0.18 5.60 0.32 3.72 0.00 5.60 16 12 N -0.71 -19.79 3.75 -422.39 -1.59 -21.38 16 13 C 0.52 15.90 7.24 87.65 0.63 16.53 16 14 O -0.57 -21.32 12.29 -3.02 -0.04 -21.36 16 15 C -0.13 -3.02 5.68 29.85 0.17 -2.85 16 16 C -0.02 -0.42 5.04 29.85 0.15 -0.26 16 17 C -0.22 -4.86 5.85 24.64 0.14 -4.72 16 18 C 0.03 0.58 11.25 83.66 0.94 1.52 16 19 N -0.50 -11.09 10.54 -203.74 -2.15 -13.24 16 20 C 0.02 0.37 12.23 130.65 1.60 1.97 16 21 S 0.12 2.50 23.22 -56.49 -1.31 1.19 16 22 C -0.15 -4.10 4.84 30.75 0.15 -3.95 16 23 C 0.07 1.39 6.67 72.08 0.48 1.87 16 24 O -0.39 -9.31 10.77 -148.98 -1.60 -10.91 16 25 C 0.07 1.58 6.68 72.01 0.48 2.06 16 26 C -0.16 -4.26 4.82 30.68 0.15 -4.12 16 27 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.38 19.08 6.51 -92.70 -0.60 18.48 16 29 H 0.03 1.20 6.25 -2.39 -0.01 1.19 16 30 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.41 9.35 7.41 -92.71 -0.69 8.67 16 32 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.09 2.33 8.14 -2.39 -0.02 2.32 16 34 H 0.10 2.23 8.10 -2.39 -0.02 2.21 16 35 H 0.06 1.80 8.10 -2.39 -0.02 1.78 16 36 H 0.19 3.08 8.06 -2.91 -0.02 3.05 16 37 H 0.23 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.07 2.30 7.22 -2.39 -0.02 2.28 16 39 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.06 1.15 7.01 -2.39 -0.02 1.13 16 42 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.06 1.15 7.75 -2.39 -0.02 1.13 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.08 2.46 6.26 -2.39 -0.01 2.44 16 Total: -1.00 -71.00 374.47 0.18 -70.81 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -0.27 Total: 36.38 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 6.62 Total: 4.14 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -5.24 Total: -128.64 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -1.64 Total: -32.27 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -1.31 Total: 1.19 kcal Total: -71.00 0.18 -70.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717266826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.029 kcal (2) G-P(sol) polarization free energy of solvation -70.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds