Wall clock time and date at job start Tue Mar 31 2020 23:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00191 * 2 1 4 4 C 1.50698 * 109.47023 * 179.97438 * 3 2 1 5 5 N 1.28658 * 124.71618 * 90.00366 * 4 3 2 6 6 C 1.33559 * 115.76388 * 179.97438 * 5 4 3 7 7 C 1.47268 * 123.13873 * 179.97438 * 6 5 4 8 8 O 1.21633 * 119.99929 * 172.10882 * 7 6 5 9 9 N 1.34767 * 120.00088 * 352.10767 * 7 6 5 10 10 C 1.46934 * 120.63127 * 171.58415 * 9 7 6 11 11 C 1.53195 * 108.77379 * 126.41339 * 10 9 7 12 12 C 1.53046 * 109.31195 * 54.63594 * 11 10 9 13 13 C 1.52996 * 109.45419 * 178.62367 * 12 11 10 14 14 N 1.46499 * 109.45799 * 58.65714 * 12 11 10 15 15 C 1.36936 * 119.99526 * 179.97438 * 14 12 11 16 16 H 1.07993 * 120.00463 * 359.97438 * 15 14 12 17 17 C 1.38820 * 119.99885 * 179.97438 * 15 14 12 18 18 N 1.31618 * 119.99894 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00155 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47059 * 270.00362 * 19 17 15 21 21 H 1.48502 * 109.46972 * 30.00045 * 19 17 15 22 22 H 1.48494 * 109.47279 * 150.00137 * 19 17 15 23 23 C 1.53029 * 109.52650 * 298.63965 * 12 11 10 24 24 C 1.46929 * 120.63362 * 351.60771 * 9 7 6 25 25 C 1.35203 * 113.71720 * 0.26424 * 6 5 4 26 26 S 1.70771 * 124.72437 * 269.95354 * 4 3 2 27 27 H 1.09009 * 109.47369 * 299.99892 * 1 2 3 28 28 H 1.08998 * 109.47280 * 59.99896 * 1 2 3 29 29 H 1.09000 * 109.47213 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47070 * 59.99944 * 3 2 1 31 31 H 1.08996 * 109.46646 * 299.99747 * 3 2 1 32 32 H 1.08995 * 109.58469 * 6.62524 * 10 9 7 33 33 H 1.08995 * 109.70299 * 246.26898 * 10 9 7 34 34 H 1.08993 * 109.49508 * 294.68507 * 11 10 9 35 35 H 1.08999 * 109.51871 * 174.60321 * 11 10 9 36 36 H 1.08997 * 109.47668 * 300.02792 * 13 12 11 37 37 H 1.08996 * 109.47371 * 60.03267 * 13 12 11 38 38 H 1.09005 * 109.47032 * 180.02562 * 13 12 11 39 39 H 0.96998 * 120.00558 * 359.96362 * 14 12 11 40 40 H 0.97001 * 119.99808 * 0.02562 * 18 17 15 41 41 H 1.09004 * 109.49719 * 181.31267 * 23 12 11 42 42 H 1.09001 * 109.50073 * 301.40770 * 23 12 11 43 43 H 1.09004 * 109.58068 * 353.37310 * 24 9 7 44 44 H 1.08997 * 109.59113 * 113.79422 * 24 9 7 45 45 H 1.08002 * 125.58884 * 179.73788 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2434 1.1283 -1.0566 6 6 5.5585 1.0247 -0.8482 7 6 6.5430 0.9461 -1.9406 8 8 7.7326 0.9974 -1.6921 9 7 6.1259 0.8173 -3.2157 10 6 7.0788 0.9218 -4.3292 11 6 6.9478 -0.3255 -5.2090 12 6 5.4892 -0.4879 -5.6430 13 6 5.3608 -1.7134 -6.5499 14 7 5.0616 0.7073 -6.3742 15 6 3.7855 0.7903 -6.8639 16 1 3.0945 -0.0254 -6.7114 17 6 3.3801 1.9231 -7.5564 18 7 4.2222 2.9175 -7.7419 19 14 1.6396 2.0361 -8.2251 20 1 1.6018 1.4835 -9.6029 21 1 0.7232 1.2571 -7.3540 22 1 1.2101 3.4573 -8.2498 23 6 4.6055 -0.6731 -4.4074 24 6 4.7096 0.5701 -3.5187 25 6 5.9011 0.9924 0.4593 26 16 4.4817 1.1109 1.4046 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8462 -0.8900 32 1 8.0935 0.9874 -3.9368 33 1 6.8574 1.8106 -4.9201 34 1 7.2591 -1.2037 -4.6435 35 1 7.5798 -0.2174 -6.0904 36 1 5.9898 -1.5815 -7.4302 37 1 5.6789 -2.6028 -6.0060 38 1 4.3221 -1.8291 -6.8595 39 1 5.6823 1.4400 -6.5114 40 1 5.1261 2.8587 -7.3949 41 1 3.5700 -0.8120 -4.7182 42 1 4.9389 -1.5481 -3.8495 43 1 4.1613 0.4035 -2.5915 44 1 4.2925 1.4300 -4.0428 45 1 6.9068 0.9081 0.8437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717305786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:07 Heat of formation + Delta-G solvation = -1.216169 kcal Electronic energy + Delta-G solvation = -28387.345428 eV Core-core repulsion = 24533.135776 eV Total energy + Delta-G solvation = -3854.209652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.81050 -39.16217 -38.07767 -37.56756 -34.55344 -32.53157 -31.82342 -30.68863 -28.70468 -28.42774 -27.79182 -26.35361 -25.20850 -23.62116 -22.85135 -22.45841 -20.89664 -19.80111 -18.98177 -17.94085 -16.94790 -16.88388 -16.40830 -16.11619 -15.97484 -15.47016 -15.38356 -14.85399 -14.33612 -14.03609 -13.95745 -13.57098 -13.53662 -13.44316 -13.00426 -12.83029 -12.57107 -12.47020 -12.21800 -11.96410 -11.74550 -11.53782 -11.31509 -11.15806 -10.80431 -10.67157 -10.58479 -10.30053 -10.07128 -10.00846 -9.97005 -9.88706 -9.81433 -9.21127 -9.08688 -9.02821 -8.78359 -8.15804 -6.95881 -6.03220 -3.02524 0.29173 0.99383 1.38801 1.81691 3.24437 3.37842 3.46530 3.52749 3.57304 3.71021 4.03337 4.55536 4.70266 4.78610 4.95038 5.01958 5.06138 5.12701 5.21122 5.30322 5.38313 5.43118 5.43361 5.55687 5.64191 5.72046 5.88444 5.92538 6.09635 6.12791 6.26846 6.34508 6.39617 6.55604 6.66719 6.67495 6.71662 6.80124 6.97467 7.05843 7.12778 7.28297 7.77922 7.88499 8.34152 8.81377 9.28829 10.15456 10.31695 11.44864 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009876 B = 0.004267 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.358486 B = 6559.685690 C = 8314.314067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.139 3.861 4 C 0.014 3.986 5 N -0.408 5.408 6 C 0.019 3.981 7 C 0.587 3.413 8 O -0.552 6.552 9 N -0.578 5.578 10 C 0.116 3.884 11 C -0.129 4.129 12 C 0.201 3.799 13 C -0.148 4.148 14 N -0.727 5.727 15 C -0.317 4.317 16 H 0.064 0.936 17 C -0.046 4.046 18 N -0.947 5.947 19 Si 1.078 2.922 20 H -0.298 1.298 21 H -0.296 1.296 22 H -0.290 1.290 23 C -0.131 4.131 24 C 0.090 3.910 25 C -0.224 4.224 26 S 0.225 5.775 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.035 0.965 38 H 0.056 0.944 39 H 0.366 0.634 40 H 0.254 0.746 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.125 0.875 44 H 0.081 0.919 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 -5.254 20.158 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.264 4.264 5 N -0.125 5.125 6 C -0.116 4.116 7 C 0.372 3.628 8 O -0.431 6.431 9 N -0.307 5.307 10 C -0.007 4.007 11 C -0.168 4.168 12 C 0.110 3.890 13 C -0.207 4.207 14 N -0.371 5.371 15 C -0.448 4.448 16 H 0.082 0.918 17 C -0.244 4.244 18 N -0.593 5.593 19 Si 0.910 3.090 20 H -0.226 1.226 21 H -0.223 1.223 22 H -0.216 1.216 23 C -0.171 4.171 24 C -0.032 4.032 25 C -0.366 4.366 26 S 0.482 5.518 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.200 0.800 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.062 0.938 43 H 0.141 0.859 44 H 0.100 0.900 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -4.156 -4.544 19.984 20.912 hybrid contribution 1.617 -0.701 -0.202 1.774 sum -2.539 -5.246 19.783 20.623 Atomic orbital electron populations 1.22816 0.79830 1.03372 1.00467 1.87947 1.20444 1.26177 1.95552 1.20799 0.84175 0.86231 1.02864 1.26882 1.01051 1.06436 0.92044 1.67061 1.03261 1.12930 1.29291 1.20521 0.89891 1.07509 0.93640 1.17089 0.86429 0.77408 0.81880 1.90762 1.15912 1.53039 1.83426 1.47953 1.10794 1.67608 1.04379 1.21605 0.93119 0.98803 0.87141 1.22093 0.98051 0.97555 0.99086 1.19500 0.90600 0.88471 0.90463 1.22191 1.02008 0.97024 0.99504 1.42490 1.12550 1.16291 1.65719 1.19940 0.89338 1.03640 1.31885 0.91771 1.25619 1.05944 0.92997 0.99800 1.70845 1.06393 1.32879 1.49193 0.83250 0.74558 0.75517 0.75690 1.22565 1.22283 1.21619 1.22276 1.01700 0.96249 0.96922 1.22673 0.79325 0.99135 1.02020 1.26637 1.06092 1.07090 0.96781 1.82696 0.94788 1.63195 1.11099 0.93814 0.93223 0.89117 0.90771 0.89451 0.89797 0.90820 0.91799 0.90913 0.93364 0.94621 0.92511 0.80027 0.93480 0.90810 0.93824 0.85853 0.90042 0.79220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.18 10.69 -35.23 -0.38 -4.55 16 3 C 0.14 1.35 6.51 36.00 0.23 1.58 16 4 C 0.01 0.17 6.97 -13.61 -0.09 0.07 16 5 N -0.41 -6.18 6.81 -8.51 -0.06 -6.24 16 6 C 0.02 0.30 6.47 -84.53 -0.55 -0.25 16 7 C 0.59 10.72 7.64 -12.59 -0.10 10.63 16 8 O -0.55 -10.93 16.17 5.25 0.08 -10.84 16 9 N -0.58 -10.72 2.97 -174.10 -0.52 -11.24 16 10 C 0.12 2.10 6.17 -3.70 -0.02 2.07 16 11 C -0.13 -2.26 4.96 -26.61 -0.13 -2.40 16 12 C 0.20 3.97 0.74 -131.78 -0.10 3.88 16 13 C -0.15 -2.79 8.44 37.16 0.31 -2.48 16 14 N -0.73 -17.27 4.13 -47.20 -0.20 -17.47 16 15 C -0.32 -8.44 8.68 -15.06 -0.13 -8.57 16 16 H 0.06 1.71 6.70 -52.49 -0.35 1.36 16 17 C -0.05 -1.31 5.50 -17.43 -0.10 -1.40 16 18 N -0.95 -28.79 13.70 55.49 0.76 -28.03 16 19 Si 1.08 25.74 29.92 -169.99 -5.09 20.65 16 20 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.30 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 C -0.13 -2.50 4.70 -26.63 -0.13 -2.63 16 24 C 0.09 1.73 5.71 -3.72 -0.02 1.71 16 25 C -0.22 -2.73 10.62 29.65 0.31 -2.42 16 26 S 0.23 2.07 22.92 -107.50 -2.46 -0.39 16 27 H 0.04 0.23 8.14 -51.92 -0.42 -0.19 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 33 H 0.07 1.43 6.94 -51.93 -0.36 1.07 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 1.14 7.27 -51.93 -0.38 0.77 16 39 H 0.37 9.15 5.30 -40.82 -0.22 8.93 16 40 H 0.25 7.64 6.77 -40.82 -0.28 7.36 16 41 H 0.07 1.50 7.32 -51.93 -0.38 1.12 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.12 2.26 4.12 -70.60 -0.29 1.97 16 44 H 0.08 1.83 7.74 -51.93 -0.40 1.42 16 45 H 0.19 2.04 8.04 -52.49 -0.42 1.61 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -33.19 371.36 -8.11 -41.30 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -6.46 Total: 10.07 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 0.61 Total: 1.15 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.01 Total: -62.98 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.29 Total: -15.40 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.09 Total: 20.65 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.46 Total: -0.39 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.19 -8.11 -41.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717305786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.081 kcal (2) G-P(sol) polarization free energy of solvation -33.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds