Wall clock time and date at job start Tue Mar 31 2020 23:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00191 * 2 1 4 4 C 1.50698 * 109.47023 * 179.97438 * 3 2 1 5 5 N 1.28658 * 124.71618 * 90.00366 * 4 3 2 6 6 C 1.33559 * 115.76388 * 179.97438 * 5 4 3 7 7 C 1.47268 * 123.13873 * 179.97438 * 6 5 4 8 8 O 1.21633 * 119.99929 * 172.10882 * 7 6 5 9 9 N 1.34767 * 120.00088 * 352.10767 * 7 6 5 10 10 C 1.46934 * 120.63127 * 171.58415 * 9 7 6 11 11 C 1.53195 * 108.77379 * 126.41339 * 10 9 7 12 12 C 1.53046 * 109.31195 * 54.63594 * 11 10 9 13 13 C 1.52996 * 109.45419 * 178.62367 * 12 11 10 14 14 N 1.46499 * 109.45799 * 58.65714 * 12 11 10 15 15 C 1.36936 * 119.99526 * 179.97438 * 14 12 11 16 16 H 1.07993 * 120.00463 * 359.97438 * 15 14 12 17 17 C 1.38820 * 119.99885 * 179.97438 * 15 14 12 18 18 N 1.31618 * 119.99894 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00155 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47059 * 270.00362 * 19 17 15 21 21 H 1.48502 * 109.46972 * 30.00045 * 19 17 15 22 22 H 1.48494 * 109.47279 * 150.00137 * 19 17 15 23 23 C 1.53029 * 109.52650 * 298.63965 * 12 11 10 24 24 C 1.46929 * 120.63362 * 351.60771 * 9 7 6 25 25 C 1.35203 * 113.71720 * 0.26424 * 6 5 4 26 26 S 1.70771 * 124.72437 * 269.95354 * 4 3 2 27 27 H 1.09009 * 109.47369 * 299.99892 * 1 2 3 28 28 H 1.08998 * 109.47280 * 59.99896 * 1 2 3 29 29 H 1.09000 * 109.47213 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47070 * 59.99944 * 3 2 1 31 31 H 1.08996 * 109.46646 * 299.99747 * 3 2 1 32 32 H 1.08995 * 109.58469 * 6.62524 * 10 9 7 33 33 H 1.08995 * 109.70299 * 246.26898 * 10 9 7 34 34 H 1.08993 * 109.49508 * 294.68507 * 11 10 9 35 35 H 1.08999 * 109.51871 * 174.60321 * 11 10 9 36 36 H 1.08997 * 109.47668 * 300.02792 * 13 12 11 37 37 H 1.08996 * 109.47371 * 60.03267 * 13 12 11 38 38 H 1.09005 * 109.47032 * 180.02562 * 13 12 11 39 39 H 0.96998 * 120.00558 * 359.96362 * 14 12 11 40 40 H 0.97001 * 119.99808 * 0.02562 * 18 17 15 41 41 H 1.09004 * 109.49719 * 181.31267 * 23 12 11 42 42 H 1.09001 * 109.50073 * 301.40770 * 23 12 11 43 43 H 1.09004 * 109.58068 * 353.37310 * 24 9 7 44 44 H 1.08997 * 109.59113 * 113.79422 * 24 9 7 45 45 H 1.08002 * 125.58884 * 179.73788 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2434 1.1283 -1.0566 6 6 5.5585 1.0247 -0.8482 7 6 6.5430 0.9461 -1.9406 8 8 7.7326 0.9974 -1.6921 9 7 6.1259 0.8173 -3.2157 10 6 7.0788 0.9218 -4.3292 11 6 6.9478 -0.3255 -5.2090 12 6 5.4892 -0.4879 -5.6430 13 6 5.3608 -1.7134 -6.5499 14 7 5.0616 0.7073 -6.3742 15 6 3.7855 0.7903 -6.8639 16 1 3.0945 -0.0254 -6.7114 17 6 3.3801 1.9231 -7.5564 18 7 4.2222 2.9175 -7.7419 19 14 1.6396 2.0361 -8.2251 20 1 1.6018 1.4835 -9.6029 21 1 0.7232 1.2571 -7.3540 22 1 1.2101 3.4573 -8.2498 23 6 4.6055 -0.6731 -4.4074 24 6 4.7096 0.5701 -3.5187 25 6 5.9011 0.9924 0.4593 26 16 4.4817 1.1109 1.4046 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8462 -0.8900 32 1 8.0935 0.9874 -3.9368 33 1 6.8574 1.8106 -4.9201 34 1 7.2591 -1.2037 -4.6435 35 1 7.5798 -0.2174 -6.0904 36 1 5.9898 -1.5815 -7.4302 37 1 5.6789 -2.6028 -6.0060 38 1 4.3221 -1.8291 -6.8595 39 1 5.6823 1.4400 -6.5114 40 1 5.1261 2.8587 -7.3949 41 1 3.5700 -0.8120 -4.7182 42 1 4.9389 -1.5481 -3.8495 43 1 4.1613 0.4035 -2.5915 44 1 4.2925 1.4300 -4.0428 45 1 6.9068 0.9081 0.8437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717305786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:06 Heat of formation + Delta-G solvation = -23.789062 kcal Electronic energy + Delta-G solvation = -28388.324262 eV Core-core repulsion = 24533.135776 eV Total energy + Delta-G solvation = -3855.188486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01794 -40.43588 -39.26572 -38.63648 -36.24533 -34.40480 -32.80600 -32.14449 -30.59773 -29.34210 -29.24003 -27.12110 -26.34789 -25.58828 -24.34487 -23.84423 -22.04773 -21.01429 -20.32643 -19.42122 -18.85074 -17.62246 -17.55406 -17.36758 -16.86188 -16.77823 -16.48303 -16.42130 -15.86477 -15.42358 -15.29776 -15.14239 -15.02852 -14.72532 -14.37860 -14.17981 -13.82257 -13.47768 -13.28698 -13.17098 -13.04771 -12.84030 -12.71345 -12.62587 -12.36658 -12.31608 -12.18950 -11.94577 -11.82321 -11.51197 -11.33075 -10.97236 -10.93036 -10.82282 -10.74122 -10.21900 -10.07009 -9.66541 -8.98469 -8.26214 -5.18735 -0.64103 0.15405 0.46639 0.69484 1.58634 1.68976 1.82181 1.96725 2.11937 2.58144 2.75834 3.14568 3.50878 3.56618 3.66443 3.82415 3.91242 4.01046 4.06982 4.13120 4.17094 4.26514 4.38525 4.42150 4.53076 4.54839 4.55519 4.61892 4.65668 4.77309 4.85229 4.91938 4.92038 4.97289 5.07300 5.12491 5.25233 5.38493 5.48036 5.62766 5.74531 6.07332 6.23668 6.40566 6.60219 6.95361 7.20160 8.11058 8.24141 9.25533 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009876 B = 0.004267 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.358486 B = 6559.685690 C = 8314.314067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.136 3.864 4 C -0.009 4.009 5 N -0.447 5.447 6 C -0.018 4.018 7 C 0.584 3.416 8 O -0.574 6.574 9 N -0.584 5.584 10 C 0.117 3.883 11 C -0.119 4.119 12 C 0.191 3.809 13 C -0.141 4.141 14 N -0.734 5.734 15 C -0.297 4.297 16 H 0.065 0.935 17 C -0.109 4.109 18 N -0.983 5.983 19 Si 1.121 2.879 20 H -0.290 1.290 21 H -0.274 1.274 22 H -0.299 1.299 23 C -0.124 4.124 24 C 0.104 3.896 25 C -0.227 4.227 26 S 0.344 5.656 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.066 0.934 38 H 0.039 0.961 39 H 0.357 0.643 40 H 0.241 0.759 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.139 0.861 44 H 0.038 0.962 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.098 -6.708 23.014 24.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C 0.057 3.943 4 C -0.287 4.287 5 N -0.165 5.165 6 C -0.153 4.153 7 C 0.371 3.629 8 O -0.455 6.455 9 N -0.313 5.313 10 C -0.005 4.005 11 C -0.157 4.157 12 C 0.101 3.899 13 C -0.200 4.200 14 N -0.376 5.376 15 C -0.429 4.429 16 H 0.083 0.917 17 C -0.299 4.299 18 N -0.633 5.633 19 Si 0.948 3.052 20 H -0.218 1.218 21 H -0.199 1.199 22 H -0.226 1.226 23 C -0.164 4.164 24 C -0.018 4.018 25 C -0.370 4.370 26 S 0.602 5.398 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.130 0.870 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.189 0.811 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.155 0.845 44 H 0.057 0.943 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.110 -6.052 22.879 24.212 hybrid contribution 1.916 -0.287 -0.857 2.119 sum -3.194 -6.339 22.022 23.138 Atomic orbital electron populations 1.22998 0.78256 1.04239 1.01504 1.87895 1.22235 1.26843 1.95778 1.20984 0.82955 0.86178 1.04215 1.27308 1.02303 1.05835 0.93209 1.66852 1.03357 1.14680 1.31604 1.20194 0.89946 1.11298 0.93818 1.17521 0.86866 0.76321 0.82210 1.90725 1.16957 1.54042 1.83819 1.47970 1.10362 1.68126 1.04868 1.21525 0.93449 0.98330 0.87213 1.22013 0.96500 0.97848 0.99380 1.19803 0.92170 0.87357 0.90529 1.22093 1.00928 0.97600 0.99355 1.42641 1.11588 1.17430 1.65955 1.20171 0.90289 1.02824 1.29636 0.91668 1.26862 1.08723 0.93179 1.01171 1.70956 1.06347 1.34362 1.51611 0.82675 0.71427 0.75200 0.75859 1.21752 1.19891 1.22610 1.22191 1.00593 0.96987 0.96675 1.22473 0.79851 0.97213 1.02266 1.26999 1.08518 1.04971 0.96493 1.82270 0.90812 1.59663 1.07048 0.91358 0.93595 0.88422 0.86997 0.90582 0.89166 0.93098 0.89906 0.90232 0.93893 0.91511 0.94141 0.81077 0.94868 0.92314 0.91847 0.84462 0.94328 0.77987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -8.15 10.69 -148.98 -1.59 -9.74 16 3 C 0.14 2.37 6.51 71.24 0.46 2.84 16 4 C -0.01 -0.20 6.97 88.57 0.62 0.42 16 5 N -0.45 -13.36 6.81 -180.83 -1.23 -14.59 16 6 C -0.02 -0.54 6.47 40.56 0.26 -0.28 16 7 C 0.58 21.50 7.64 86.62 0.66 22.16 16 8 O -0.57 -22.80 16.17 -4.14 -0.07 -22.86 16 9 N -0.58 -22.14 2.97 -822.99 -2.45 -24.59 16 10 C 0.12 4.37 6.17 86.36 0.53 4.90 16 11 C -0.12 -4.11 4.96 30.68 0.15 -3.96 16 12 C 0.19 7.54 0.74 3.63 0.00 7.55 16 13 C -0.14 -5.15 8.44 71.98 0.61 -4.54 16 14 N -0.73 -35.86 4.13 -303.24 -1.25 -37.12 16 15 C -0.30 -16.16 8.68 84.04 0.73 -15.43 16 16 H 0.07 3.49 6.70 -2.91 -0.02 3.47 16 17 C -0.11 -6.27 5.50 84.86 0.47 -5.81 16 18 N -0.98 -61.93 13.70 21.65 0.30 -61.63 16 19 Si 1.12 52.64 29.92 68.60 2.05 54.70 16 20 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 23 C -0.12 -4.73 4.70 30.66 0.14 -4.59 16 24 C 0.10 4.10 5.71 86.35 0.49 4.59 16 25 C -0.23 -5.05 10.62 67.12 0.71 -4.34 16 26 S 0.34 5.10 22.92 -56.49 -1.29 3.80 16 27 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 3.22 7.00 -2.39 -0.02 3.20 16 33 H 0.05 2.10 6.94 -2.39 -0.02 2.09 16 34 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.04 1.59 7.27 -2.38 -0.02 1.57 16 39 H 0.36 18.69 5.30 -92.71 -0.49 18.20 16 40 H 0.24 15.23 6.77 -92.71 -0.63 14.60 16 41 H 0.06 2.39 7.32 -2.38 -0.02 2.38 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.14 5.13 4.12 -39.25 -0.16 4.97 16 44 H 0.04 1.83 7.74 -2.39 -0.02 1.81 16 45 H 0.20 3.86 8.04 -2.91 -0.02 3.84 16 Total: -1.00 -74.48 371.36 2.08 -72.40 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.52 Total: 34.54 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 7.10 Total: 5.09 kcal Atomic # 7 Polarization: -133.29 SS G_CDS: -4.63 Total: -137.93 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -1.66 Total: -32.60 kcal Atomic # 14 Polarization: 52.64 SS G_CDS: 2.05 Total: 54.70 kcal Atomic # 16 Polarization: 5.10 SS G_CDS: -1.29 Total: 3.80 kcal Total: -74.48 2.08 -72.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717305786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.612 kcal (2) G-P(sol) polarization free energy of solvation -74.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds