Wall clock time and date at job start Tue Mar 31 2020 23:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39834 * 126.45801 * 2 1 4 4 C 1.35446 * 107.86579 * 180.29655 * 3 2 1 5 5 N 1.35534 * 108.87292 * 359.73883 * 4 3 2 6 6 H 0.97002 * 125.68067 * 179.97438 * 5 4 3 7 7 C 1.37651 * 108.64090 * 0.02562 * 5 4 3 8 8 C 1.46682 * 126.23455 * 180.02562 * 7 5 4 9 9 O 1.21693 * 120.00116 * 180.02562 * 8 7 5 10 10 N 1.34775 * 119.99672 * 0.02562 * 8 7 5 11 11 C 1.46507 * 119.99880 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47101 * 325.00423 * 11 10 8 13 13 C 1.53004 * 109.46732 * 85.00694 * 11 10 8 14 14 C 1.52999 * 109.47137 * 205.00250 * 11 10 8 15 15 H 1.09004 * 109.47434 * 300.00316 * 14 11 10 16 16 C 1.52997 * 109.47114 * 60.00123 * 14 11 10 17 17 N 1.46498 * 109.46963 * 179.97438 * 14 11 10 18 18 C 1.34777 * 119.99828 * 154.72290 * 17 14 11 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 14 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 14 21 21 S 1.81000 * 109.47389 * 180.02562 * 20 18 17 22 22 C 1.76198 * 99.99715 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00516 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99710 * 179.97438 * 22 21 20 25 25 N 1.31634 * 120.00163 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00011 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46661 * 60.00586 * 26 24 22 28 28 H 1.48501 * 109.47391 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47355 * 300.00441 * 26 24 22 30 30 H 1.08998 * 109.47299 * 270.14648 * 1 2 3 31 31 H 1.09008 * 109.47016 * 30.14561 * 1 2 3 32 32 H 1.08994 * 109.47416 * 150.14269 * 1 2 3 33 33 H 1.08000 * 126.06813 * 0.02562 * 3 2 1 34 34 H 1.08006 * 125.56617 * 179.70007 * 4 3 2 35 35 H 0.97000 * 120.00517 * 0.02562 * 10 8 7 36 36 H 1.09010 * 109.46876 * 299.99572 * 13 11 10 37 37 H 1.08994 * 109.47427 * 59.99463 * 13 11 10 38 38 H 1.08999 * 109.46966 * 180.02562 * 13 11 10 39 39 H 1.08997 * 109.47293 * 179.97438 * 16 14 11 40 40 H 1.09003 * 109.47189 * 300.00067 * 16 14 11 41 41 H 1.09009 * 109.47238 * 59.99946 * 16 14 11 42 42 H 0.97001 * 120.00384 * 335.00737 * 17 14 11 43 43 H 1.08998 * 109.46954 * 300.00581 * 20 18 17 44 44 H 1.09002 * 109.46946 * 59.99717 * 20 18 17 45 45 H 0.96991 * 119.99795 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6217 0.6928 -0.0067 5 7 3.6284 -0.6625 -0.0050 6 1 4.4191 -1.2244 -0.0091 7 6 2.3263 -1.1089 0.0023 8 6 1.8898 -2.5092 0.0068 9 8 0.7026 -2.7765 0.0127 10 7 2.8036 -3.4998 0.0044 11 6 2.3677 -4.8986 0.0083 12 1 1.4584 -4.9941 0.6017 13 6 2.0900 -5.3502 -1.4269 14 6 3.4667 -5.7735 0.6146 15 1 4.3760 -5.6780 0.0212 16 6 3.7445 -5.3219 2.0498 17 7 3.0305 -7.1721 0.6191 18 6 3.9441 -8.1629 0.6112 19 8 5.1273 -7.8967 0.6055 20 6 3.4955 -9.6016 0.6095 21 16 4.9449 -10.6856 0.5991 22 6 4.1506 -12.2584 0.5996 23 1 3.0723 -12.3189 0.6048 24 6 4.9108 -13.4197 0.5921 25 7 6.2250 -13.3461 0.5852 26 14 4.0688 -15.0872 0.5934 27 1 3.2134 -15.2106 -0.6143 28 1 5.0954 -16.1602 0.5851 29 1 3.2282 -15.2164 1.8106 30 1 -0.3634 0.0026 1.0276 31 1 -0.3633 0.8887 -0.5161 32 1 -0.3634 -0.8912 -0.5116 33 1 2.0137 2.1548 0.0004 34 1 4.4972 1.3253 -0.0130 35 1 3.7499 -3.2868 0.0000 36 1 1.3070 -4.7268 -1.8589 37 1 2.9992 -5.2546 -2.0203 38 1 1.7652 -6.3907 -1.4240 39 1 4.5270 -5.9455 2.4819 40 1 4.0688 -4.2812 2.0469 41 1 2.8351 -5.4174 2.6433 42 1 2.0842 -7.3850 0.6236 43 1 2.9016 -9.7980 1.5021 44 1 2.8918 -9.7929 -0.2777 45 1 6.7562 -14.1577 0.5804 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718085455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:44 Heat of formation + Delta-G solvation = -39.871753 kcal Electronic energy + Delta-G solvation = -26203.224711 eV Core-core repulsion = 22347.338827 eV Total energy + Delta-G solvation = -3855.885884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.74495 -40.04528 -39.10830 -36.83333 -34.26663 -32.85605 -32.45126 -31.52001 -30.48885 -29.57593 -28.53052 -27.15963 -25.50936 -24.31386 -22.86087 -21.44743 -20.91169 -20.35599 -19.61956 -19.01883 -17.90312 -16.79919 -16.49139 -15.87049 -15.61685 -15.55714 -15.05663 -14.82280 -14.51864 -14.24587 -14.12170 -13.99533 -13.79711 -13.60616 -13.37157 -13.24280 -12.94899 -12.75704 -12.60769 -12.51110 -12.48722 -12.06216 -11.92417 -11.86120 -11.58656 -11.07208 -11.05474 -10.95756 -10.78537 -10.28935 -9.85200 -9.60870 -9.46816 -9.17130 -9.08957 -8.99706 -8.54419 -8.27907 -6.53133 -6.24004 -3.94895 1.08803 2.34877 2.52395 2.69606 3.00979 3.03563 3.09500 3.22177 3.26593 3.31569 3.70495 4.18120 4.20178 4.51440 4.61567 4.68794 4.81834 4.89142 4.94226 5.07161 5.11265 5.21355 5.26615 5.42015 5.43584 5.46485 5.53377 5.59621 5.61011 5.64441 5.80275 5.81755 5.84873 5.97139 6.01248 6.07213 6.10066 6.11223 6.32889 6.53679 6.56749 6.92832 7.12158 7.57055 7.60922 7.82732 8.32769 8.52552 9.21405 10.83350 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034740 B = 0.001795 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.783833 B =15595.420787 C =16069.301863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.072 4.072 3 C -0.213 4.213 4 C 0.028 3.972 5 N -0.541 5.541 6 H 0.416 0.584 7 C -0.063 4.063 8 C 0.593 3.407 9 O -0.524 6.524 10 N -0.723 5.723 11 C 0.139 3.861 12 H 0.096 0.904 13 C -0.164 4.164 14 C 0.138 3.862 15 H 0.092 0.908 16 C -0.163 4.163 17 N -0.730 5.730 18 C 0.536 3.464 19 O -0.516 6.516 20 C -0.154 4.154 21 S -0.059 6.059 22 C -0.537 4.537 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.919 3.081 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.143 0.857 34 H 0.172 0.828 35 H 0.394 0.606 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.400 0.600 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.043 28.429 -1.282 29.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.238 4.238 4 C -0.108 4.108 5 N -0.138 5.138 6 H 0.254 0.746 7 C -0.175 4.175 8 C 0.381 3.619 9 O -0.400 6.400 10 N -0.375 5.375 11 C 0.034 3.966 12 H 0.114 0.886 13 C -0.222 4.222 14 C 0.032 3.968 15 H 0.110 0.890 16 C -0.221 4.221 17 N -0.385 5.385 18 C 0.322 3.678 19 O -0.390 6.390 20 C -0.305 4.305 21 S 0.167 5.833 22 C -0.685 4.685 23 H 0.091 0.909 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.161 0.839 34 H 0.189 0.811 35 H 0.228 0.772 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.234 0.766 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.642 28.408 -1.287 29.202 hybrid contribution -1.287 -1.536 0.026 2.004 sum -7.929 26.872 -1.261 28.046 Atomic orbital electron populations 1.20358 0.89237 1.02947 1.02287 1.19988 0.95955 0.90772 1.01311 1.20830 0.91844 0.98886 1.12216 1.22035 0.99641 0.82926 1.06178 1.41961 1.07146 1.07354 1.57302 0.74644 1.20194 0.83801 0.93430 1.20111 1.17000 0.85820 0.82909 0.76182 1.90823 1.15899 1.83164 1.50093 1.45820 1.09340 1.05971 1.76329 1.21164 0.98113 0.79591 0.97775 0.88563 1.22182 1.02371 1.02181 0.95461 1.20995 0.97354 0.81369 0.97100 0.89033 1.22190 1.02703 1.01065 0.96189 1.45934 1.10038 1.04662 1.77890 1.20313 0.85901 0.86774 0.74763 1.90697 1.16736 1.84103 1.47484 1.23538 1.07199 0.94668 1.05053 1.85371 1.03686 0.97492 1.96737 1.22829 0.95056 0.91479 1.59113 0.90940 1.24991 0.94857 0.99206 0.94488 1.70003 1.04227 1.29319 1.46761 0.86223 0.78943 0.81509 0.78828 1.19921 1.20802 1.19927 0.91469 0.91985 0.90120 0.83923 0.81122 0.77204 0.91791 0.92203 0.90927 0.91246 0.92237 0.92251 0.76589 0.89124 0.89125 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 9.83 36.01 0.35 -0.44 16 2 C -0.07 -0.66 6.21 -104.16 -0.65 -1.31 16 3 C -0.21 -1.53 10.76 -39.98 -0.43 -1.96 16 4 C 0.03 0.15 11.89 -16.91 -0.20 -0.05 16 5 N -0.54 -3.13 5.99 -9.39 -0.06 -3.18 16 6 H 0.42 1.24 8.19 -40.82 -0.33 0.90 16 7 C -0.06 -0.57 7.06 -81.98 -0.58 -1.15 16 8 C 0.59 6.04 7.75 -12.85 -0.10 5.94 16 9 O -0.52 -6.92 14.47 5.20 0.08 -6.84 16 10 N -0.72 -5.75 4.38 -55.11 -0.24 -5.99 16 11 C 0.14 1.25 2.21 -67.93 -0.15 1.10 16 12 H 0.10 0.95 7.58 -51.93 -0.39 0.56 16 13 C -0.16 -1.53 9.33 37.16 0.35 -1.18 16 14 C 0.14 1.44 2.21 -67.93 -0.15 1.29 16 15 H 0.09 1.07 7.57 -51.93 -0.39 0.68 16 16 C -0.16 -1.66 9.33 37.16 0.35 -1.31 16 17 N -0.73 -8.92 4.38 -53.81 -0.24 -9.15 16 18 C 0.54 9.36 7.82 -10.98 -0.09 9.28 16 19 O -0.52 -10.98 15.52 5.55 0.09 -10.89 16 20 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 21 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 22 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 23 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 24 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 25 N -0.87 -25.93 13.22 55.49 0.73 -25.19 16 26 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 29 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.08 0.84 6.49 -51.93 -0.34 0.50 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.17 0.35 8.06 -52.48 -0.42 -0.07 16 35 H 0.39 2.23 7.52 -40.82 -0.31 1.92 16 36 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.67 7.45 -51.93 -0.39 0.28 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.48 7.45 -51.93 -0.39 0.10 16 41 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 42 H 0.40 3.90 8.39 -40.82 -0.34 3.56 16 43 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 44 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 392.93 15.07 5.92 5.92 Total: -1.00 -36.40 392.93 -8.48 -44.88 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.65 Total: 3.39 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -0.87 Total: -5.37 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.20 Total: -43.52 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.16 Total: -17.73 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.40 -8.48 -44.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718085455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.006 kcal (2) G-P(sol) polarization free energy of solvation -36.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds