Wall clock time and date at job start Tue Mar 31 2020 23:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39834 * 126.45801 * 2 1 4 4 C 1.35446 * 107.86579 * 180.29655 * 3 2 1 5 5 N 1.35534 * 108.87292 * 359.73883 * 4 3 2 6 6 H 0.97002 * 125.68067 * 179.97438 * 5 4 3 7 7 C 1.37651 * 108.64090 * 0.02562 * 5 4 3 8 8 C 1.46682 * 126.23455 * 180.02562 * 7 5 4 9 9 O 1.21693 * 120.00116 * 180.02562 * 8 7 5 10 10 N 1.34775 * 119.99672 * 0.02562 * 8 7 5 11 11 C 1.46507 * 119.99880 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47101 * 325.00423 * 11 10 8 13 13 C 1.53004 * 109.46732 * 85.00694 * 11 10 8 14 14 C 1.52999 * 109.47137 * 205.00250 * 11 10 8 15 15 H 1.09004 * 109.47434 * 300.00316 * 14 11 10 16 16 C 1.52997 * 109.47114 * 60.00123 * 14 11 10 17 17 N 1.46498 * 109.46963 * 179.97438 * 14 11 10 18 18 C 1.34777 * 119.99828 * 154.72290 * 17 14 11 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 14 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 14 21 21 S 1.81000 * 109.47389 * 180.02562 * 20 18 17 22 22 C 1.76198 * 99.99715 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00516 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99710 * 179.97438 * 22 21 20 25 25 N 1.31634 * 120.00163 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00011 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46661 * 60.00586 * 26 24 22 28 28 H 1.48501 * 109.47391 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47355 * 300.00441 * 26 24 22 30 30 H 1.08998 * 109.47299 * 270.14648 * 1 2 3 31 31 H 1.09008 * 109.47016 * 30.14561 * 1 2 3 32 32 H 1.08994 * 109.47416 * 150.14269 * 1 2 3 33 33 H 1.08000 * 126.06813 * 0.02562 * 3 2 1 34 34 H 1.08006 * 125.56617 * 179.70007 * 4 3 2 35 35 H 0.97000 * 120.00517 * 0.02562 * 10 8 7 36 36 H 1.09010 * 109.46876 * 299.99572 * 13 11 10 37 37 H 1.08994 * 109.47427 * 59.99463 * 13 11 10 38 38 H 1.08999 * 109.46966 * 180.02562 * 13 11 10 39 39 H 1.08997 * 109.47293 * 179.97438 * 16 14 11 40 40 H 1.09003 * 109.47189 * 300.00067 * 16 14 11 41 41 H 1.09009 * 109.47238 * 59.99946 * 16 14 11 42 42 H 0.97001 * 120.00384 * 335.00737 * 17 14 11 43 43 H 1.08998 * 109.46954 * 300.00581 * 20 18 17 44 44 H 1.09002 * 109.46946 * 59.99717 * 20 18 17 45 45 H 0.96991 * 119.99795 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6217 0.6928 -0.0067 5 7 3.6284 -0.6625 -0.0050 6 1 4.4191 -1.2244 -0.0091 7 6 2.3263 -1.1089 0.0023 8 6 1.8898 -2.5092 0.0068 9 8 0.7026 -2.7765 0.0127 10 7 2.8036 -3.4998 0.0044 11 6 2.3677 -4.8986 0.0083 12 1 1.4584 -4.9941 0.6017 13 6 2.0900 -5.3502 -1.4269 14 6 3.4667 -5.7735 0.6146 15 1 4.3760 -5.6780 0.0212 16 6 3.7445 -5.3219 2.0498 17 7 3.0305 -7.1721 0.6191 18 6 3.9441 -8.1629 0.6112 19 8 5.1273 -7.8967 0.6055 20 6 3.4955 -9.6016 0.6095 21 16 4.9449 -10.6856 0.5991 22 6 4.1506 -12.2584 0.5996 23 1 3.0723 -12.3189 0.6048 24 6 4.9108 -13.4197 0.5921 25 7 6.2250 -13.3461 0.5852 26 14 4.0688 -15.0872 0.5934 27 1 3.2134 -15.2106 -0.6143 28 1 5.0954 -16.1602 0.5851 29 1 3.2282 -15.2164 1.8106 30 1 -0.3634 0.0026 1.0276 31 1 -0.3633 0.8887 -0.5161 32 1 -0.3634 -0.8912 -0.5116 33 1 2.0137 2.1548 0.0004 34 1 4.4972 1.3253 -0.0130 35 1 3.7499 -3.2868 0.0000 36 1 1.3070 -4.7268 -1.8589 37 1 2.9992 -5.2546 -2.0203 38 1 1.7652 -6.3907 -1.4240 39 1 4.5270 -5.9455 2.4819 40 1 4.0688 -4.2812 2.0469 41 1 2.8351 -5.4174 2.6433 42 1 2.0842 -7.3850 0.6236 43 1 2.9016 -9.7980 1.5021 44 1 2.8918 -9.7929 -0.2777 45 1 6.7562 -14.1577 0.5804 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718085455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:43 Heat of formation + Delta-G solvation = -66.040360 kcal Electronic energy + Delta-G solvation = -26204.359466 eV Core-core repulsion = 22347.338827 eV Total energy + Delta-G solvation = -3857.020640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.31102 -41.07290 -40.13855 -37.85229 -35.26860 -34.58117 -33.49291 -32.55438 -31.38535 -30.21916 -29.83501 -27.80585 -27.64555 -25.13090 -23.66821 -22.17304 -21.80890 -21.36712 -20.36050 -19.81818 -19.56949 -18.06593 -17.44443 -16.89079 -16.87598 -16.48177 -16.45098 -16.27169 -15.78117 -15.27825 -15.02696 -14.79948 -14.67634 -14.56180 -14.46471 -14.37151 -13.93985 -13.75057 -13.58077 -13.32736 -13.26189 -13.16616 -13.15228 -12.87445 -12.75754 -12.62751 -12.56260 -12.50642 -11.84812 -11.72330 -11.13469 -11.12891 -10.93556 -10.43447 -10.27990 -10.10699 -9.68842 -9.11238 -8.65682 -8.34665 -6.12096 0.45805 1.24878 1.43542 1.44709 1.54164 1.60053 1.83868 1.85077 2.23617 2.27488 2.32722 2.47725 2.99507 3.31174 3.37094 3.83795 3.88921 3.95588 4.06820 4.25649 4.27887 4.30518 4.36678 4.40587 4.43249 4.52580 4.64911 4.67430 4.81496 4.88825 4.90348 4.92671 5.02044 5.16924 5.18113 5.21165 5.27561 5.42036 5.45239 5.47729 5.77381 5.98689 6.19718 6.39888 6.45999 6.61689 7.06939 7.09991 7.21431 8.74113 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034740 B = 0.001795 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.783833 B =15595.420787 C =16069.301863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.094 4.094 3 C -0.233 4.233 4 C 0.049 3.951 5 N -0.530 5.530 6 H 0.430 0.570 7 C -0.089 4.089 8 C 0.592 3.408 9 O -0.561 6.561 10 N -0.711 5.711 11 C 0.150 3.850 12 H 0.093 0.907 13 C -0.161 4.161 14 C 0.143 3.857 15 H 0.084 0.916 16 C -0.158 4.158 17 N -0.706 5.706 18 C 0.541 3.459 19 O -0.559 6.559 20 C -0.132 4.132 21 S -0.147 6.147 22 C -0.548 4.548 23 H 0.082 0.918 24 C 0.014 3.986 25 N -0.910 5.910 26 Si 0.996 3.004 27 H -0.263 1.263 28 H -0.279 1.279 29 H -0.263 1.263 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.157 0.843 34 H 0.211 0.789 35 H 0.407 0.593 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.415 0.585 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.864 29.617 -1.278 30.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.256 4.256 4 C -0.088 4.088 5 N -0.127 5.127 6 H 0.270 0.730 7 C -0.201 4.201 8 C 0.382 3.618 9 O -0.440 6.440 10 N -0.363 5.363 11 C 0.045 3.955 12 H 0.111 0.889 13 C -0.219 4.219 14 C 0.037 3.963 15 H 0.102 0.898 16 C -0.217 4.217 17 N -0.361 5.361 18 C 0.327 3.673 19 O -0.436 6.436 20 C -0.283 4.283 21 S 0.081 5.919 22 C -0.696 4.696 23 H 0.100 0.900 24 C -0.190 4.190 25 N -0.547 5.547 26 Si 0.818 3.182 27 H -0.187 1.187 28 H -0.204 1.204 29 H -0.188 1.188 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.175 0.825 34 H 0.227 0.773 35 H 0.243 0.757 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.253 0.747 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.475 29.618 -1.282 30.574 hybrid contribution -1.058 -1.710 0.021 2.011 sum -8.533 27.908 -1.262 29.211 Atomic orbital electron populations 1.20300 0.89714 1.02549 1.02002 1.20278 0.96245 0.91967 1.01869 1.21109 0.92375 0.99122 1.13045 1.22674 1.00355 0.82796 1.03018 1.41968 1.06571 1.07871 1.56333 0.73032 1.20019 0.85248 0.92656 1.22193 1.17197 0.85446 0.83658 0.75528 1.90802 1.17431 1.83776 1.51987 1.45652 1.09870 1.05141 1.75654 1.20953 0.97222 0.79867 0.97446 0.88890 1.22151 1.02110 1.02198 0.95430 1.21053 0.97488 0.80166 0.97574 0.89801 1.22138 1.02126 1.01951 0.95439 1.45659 1.10112 1.04622 1.75701 1.19948 0.85759 0.86797 0.74773 1.90690 1.18563 1.84487 1.49894 1.23389 1.03783 0.94323 1.06836 1.85510 1.09529 0.99857 1.97047 1.23184 0.95549 0.91957 1.58906 0.89972 1.26096 0.95493 1.03686 0.93768 1.70167 1.06047 1.30497 1.47962 0.85036 0.77871 0.75842 0.79458 1.18712 1.20402 1.18756 0.91731 0.90537 0.92269 0.82510 0.77258 0.75679 0.92533 0.92173 0.90636 0.93725 0.89927 0.91711 0.74734 0.87320 0.87159 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.58 9.83 71.24 0.70 -0.88 16 2 C -0.09 -1.68 6.21 -19.56 -0.12 -1.80 16 3 C -0.23 -2.87 10.76 22.01 0.24 -2.63 16 4 C 0.05 0.37 11.89 83.48 0.99 1.36 16 5 N -0.53 -4.83 5.99 -183.62 -1.10 -5.93 16 6 H 0.43 1.34 8.19 -92.71 -0.76 0.58 16 7 C -0.09 -1.50 7.06 40.35 0.28 -1.22 16 8 C 0.59 11.72 7.75 86.45 0.67 12.39 16 9 O -0.56 -14.99 14.47 -4.33 -0.06 -15.05 16 10 N -0.71 -10.36 4.38 -446.49 -1.96 -12.32 16 11 C 0.15 2.52 2.21 44.99 0.10 2.62 16 12 H 0.09 1.71 7.58 -2.39 -0.02 1.69 16 13 C -0.16 -2.82 9.33 71.98 0.67 -2.14 16 14 C 0.14 2.78 2.21 44.99 0.10 2.88 16 15 H 0.08 1.86 7.57 -2.39 -0.02 1.85 16 16 C -0.16 -2.99 9.33 71.98 0.67 -2.31 16 17 N -0.71 -16.19 4.38 -442.53 -1.94 -18.13 16 18 C 0.54 18.55 7.82 87.66 0.69 19.24 16 19 O -0.56 -24.02 15.52 -3.04 -0.05 -24.07 16 20 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 21 S -0.15 -7.95 20.57 -56.49 -1.16 -9.11 16 22 C -0.55 -30.92 9.50 67.96 0.65 -30.28 16 23 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 24 C 0.01 0.82 5.49 84.86 0.47 1.28 16 25 N -0.91 -55.39 13.22 21.65 0.29 -55.10 16 26 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 27 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 28 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 29 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.06 1.30 6.49 -2.39 -0.02 1.28 16 33 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 34 H 0.21 -0.12 8.06 -2.91 -0.02 -0.15 16 35 H 0.41 3.81 7.52 -92.71 -0.70 3.11 16 36 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.27 7.45 -2.39 -0.02 1.25 16 39 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.17 7.45 -2.39 -0.02 1.15 16 41 H 0.06 1.16 8.14 -2.38 -0.02 1.15 16 42 H 0.42 7.15 8.39 -92.71 -0.78 6.37 16 43 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 44 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 45 H 0.27 15.35 8.31 -92.72 -0.77 14.58 16 Total: -1.00 -81.98 392.93 1.39 -80.59 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -1.20 Total: 19.89 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 6.54 Total: -6.06 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -4.71 Total: -91.48 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -0.11 Total: -39.12 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.11 kcal Total: -81.98 1.39 -80.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718085455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.548 kcal (2) G-P(sol) polarization free energy of solvation -81.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds