Wall clock time and date at job start Tue Mar 31 2020 23:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39839 * 126.45848 * 2 1 4 4 C 1.35458 * 107.86439 * 180.30733 * 3 2 1 5 5 N 1.35534 * 108.87116 * 359.73947 * 4 3 2 6 6 H 0.97003 * 125.68001 * 180.02562 * 5 4 3 7 7 C 1.37653 * 108.64366 * 0.02562 * 5 4 3 8 8 C 1.46678 * 126.23116 * 180.02562 * 7 5 4 9 9 O 1.21695 * 119.99993 * 180.02562 * 8 7 5 10 10 N 1.34775 * 120.00199 * 0.02562 * 8 7 5 11 11 C 1.46503 * 120.00091 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46807 * 324.99746 * 11 10 8 13 13 C 1.52998 * 109.46969 * 85.00295 * 11 10 8 14 14 C 1.53002 * 109.46849 * 204.99890 * 11 10 8 15 15 H 1.09002 * 109.47070 * 65.00067 * 14 11 10 16 16 C 1.53000 * 109.47233 * 304.99693 * 14 11 10 17 17 N 1.46499 * 109.46799 * 185.00167 * 14 11 10 18 18 C 1.34781 * 119.99874 * 205.00309 * 17 14 11 19 19 O 1.21278 * 120.00033 * 359.97438 * 18 17 14 20 20 C 1.50703 * 120.00101 * 179.97438 * 18 17 14 21 21 S 1.80993 * 109.47222 * 179.97438 * 20 18 17 22 22 C 1.76199 * 100.00057 * 179.97438 * 21 20 18 23 23 H 1.07997 * 119.99970 * 0.02562 * 22 21 20 24 24 C 1.38800 * 120.00000 * 180.02562 * 22 21 20 25 25 N 1.31636 * 120.00005 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00148 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46820 * 90.00022 * 26 24 22 28 28 H 1.48493 * 109.47002 * 210.00109 * 26 24 22 29 29 H 1.48496 * 109.46952 * 330.00216 * 26 24 22 30 30 H 1.09000 * 109.46578 * 270.13323 * 1 2 3 31 31 H 1.08994 * 109.46994 * 30.13176 * 1 2 3 32 32 H 1.08997 * 109.47213 * 150.13727 * 1 2 3 33 33 H 1.07994 * 126.07122 * 0.02652 * 3 2 1 34 34 H 1.07994 * 125.56125 * 179.70648 * 4 3 2 35 35 H 0.97002 * 119.99909 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.47805 * 60.00062 * 13 11 10 37 37 H 1.09003 * 109.46952 * 180.02562 * 13 11 10 38 38 H 1.09001 * 109.47027 * 299.99535 * 13 11 10 39 39 H 1.08992 * 109.47399 * 300.00166 * 16 14 11 40 40 H 1.09004 * 109.46724 * 60.00652 * 16 14 11 41 41 H 1.09001 * 109.47194 * 179.97438 * 16 14 11 42 42 H 0.97002 * 120.00410 * 24.99527 * 17 14 11 43 43 H 1.09002 * 109.46880 * 299.99754 * 20 18 17 44 44 H 1.09003 * 109.46851 * 59.99965 * 20 18 17 45 45 H 0.96998 * 119.99706 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6928 -0.0069 5 7 3.6284 -0.6625 -0.0054 6 1 4.4190 -1.2245 -0.0090 7 6 2.3263 -1.1089 0.0020 8 6 1.8898 -2.5092 0.0064 9 8 0.7026 -2.7766 0.0125 10 7 2.8036 -3.4999 0.0037 11 6 2.3677 -4.8986 0.0076 12 1 1.4586 -4.9941 0.6012 13 6 2.0897 -5.3500 -1.4276 14 6 3.4668 -5.7736 0.6136 15 1 3.6031 -5.5111 1.6627 16 6 4.7764 -5.5449 -0.1438 17 7 3.0820 -7.1833 0.5088 18 6 3.5884 -8.0860 1.3720 19 8 4.3630 -7.7314 2.2352 20 6 3.1922 -9.5360 1.2647 21 16 4.0335 -10.4884 2.5534 22 6 3.4060 -12.0974 2.2038 23 1 2.7138 -12.2413 1.3874 24 6 3.8013 -13.1797 2.9776 25 7 4.6454 -13.0043 3.9723 26 14 3.1355 -14.8854 2.6074 27 1 4.0319 -15.5673 1.6395 28 1 3.0710 -15.6748 3.8634 29 1 1.7745 -14.7697 2.0249 30 1 -0.3632 0.0024 1.0277 31 1 -0.3633 0.8888 -0.5159 32 1 -0.3633 -0.8912 -0.5117 33 1 2.0137 2.1548 0.0004 34 1 4.4972 1.3252 -0.0132 35 1 3.7499 -3.2868 -0.0007 36 1 2.9988 -5.2545 -2.0212 37 1 1.7649 -6.3905 -1.4247 38 1 1.3066 -4.7266 -1.8593 39 1 4.6401 -5.8073 -1.1928 40 1 5.0628 -4.4960 -0.0658 41 1 5.5596 -6.1679 0.2882 42 1 2.4627 -7.4670 -0.1818 43 1 2.1133 -9.6281 1.3902 44 1 3.4781 -9.9192 0.2851 45 1 4.9214 -13.7607 4.5133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718085456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:50 Heat of formation + Delta-G solvation = -34.993519 kcal Electronic energy + Delta-G solvation = -26209.628335 eV Core-core repulsion = 22353.953988 eV Total energy + Delta-G solvation = -3855.674347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.74628 -40.11913 -39.10342 -36.98441 -34.24343 -32.84974 -32.44721 -31.57675 -30.28481 -29.42970 -28.54584 -27.18485 -25.52693 -25.02851 -22.97468 -21.37152 -20.59410 -20.08731 -19.66296 -19.04551 -17.92176 -16.64982 -16.47073 -16.21829 -15.62120 -15.50207 -15.07199 -14.81968 -14.72276 -14.33189 -14.20870 -14.06423 -13.93010 -13.41619 -13.26881 -13.22390 -12.93556 -12.86434 -12.59146 -12.58630 -12.50332 -12.09342 -11.97608 -11.90376 -11.29164 -11.14119 -11.07838 -11.04129 -10.77865 -10.26702 -9.84133 -9.56647 -9.46190 -9.16688 -9.09970 -9.02894 -8.54182 -8.26831 -6.52593 -6.23723 -3.94499 1.09150 2.35215 2.55009 2.69694 3.01135 3.03774 3.08467 3.21185 3.27220 3.31769 3.68347 4.18475 4.24699 4.49836 4.59784 4.61589 4.82042 4.84466 4.94083 5.05154 5.10344 5.11529 5.12879 5.33879 5.40461 5.42898 5.53838 5.58644 5.60974 5.63257 5.74326 5.81657 5.85011 5.85501 5.99365 6.10055 6.10108 6.11509 6.33160 6.53216 6.57239 6.92797 7.12047 7.57619 7.60743 7.83463 8.33316 8.52951 9.21783 10.83681 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030601 B = 0.001804 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.796573 B =15513.877982 C =15846.164384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.071 4.071 3 C -0.213 4.213 4 C 0.028 3.972 5 N -0.542 5.542 6 H 0.416 0.584 7 C -0.063 4.063 8 C 0.591 3.409 9 O -0.523 6.523 10 N -0.725 5.725 11 C 0.138 3.862 12 H 0.099 0.901 13 C -0.167 4.167 14 C 0.138 3.862 15 H 0.094 0.906 16 C -0.167 4.167 17 N -0.732 5.732 18 C 0.535 3.465 19 O -0.515 6.515 20 C -0.154 4.154 21 S -0.060 6.060 22 C -0.536 4.536 23 H 0.073 0.927 24 C 0.073 3.927 25 N -0.868 5.868 26 Si 0.919 3.081 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.143 0.857 34 H 0.172 0.828 35 H 0.394 0.606 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.399 0.601 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.641 27.259 -12.893 30.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.237 4.237 4 C -0.108 4.108 5 N -0.138 5.138 6 H 0.253 0.747 7 C -0.175 4.175 8 C 0.379 3.621 9 O -0.398 6.398 10 N -0.378 5.378 11 C 0.033 3.967 12 H 0.117 0.883 13 C -0.226 4.226 14 C 0.031 3.969 15 H 0.112 0.888 16 C -0.226 4.226 17 N -0.388 5.388 18 C 0.321 3.679 19 O -0.389 6.389 20 C -0.305 4.305 21 S 0.167 5.833 22 C -0.684 4.684 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.203 1.203 28 H -0.207 1.207 29 H -0.197 1.197 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.161 0.839 34 H 0.189 0.811 35 H 0.229 0.771 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.235 0.765 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.009 27.406 -11.281 29.705 hybrid contribution -0.520 -1.700 -1.561 2.366 sum -2.529 25.706 -12.842 28.847 Atomic orbital electron populations 1.20361 0.89211 1.02927 1.02366 1.19996 0.95978 0.90762 1.01228 1.20835 0.91833 0.98891 1.12177 1.22034 0.99645 0.82903 1.06221 1.41950 1.07113 1.07349 1.57390 0.74730 1.20195 0.83795 0.93431 1.20117 1.17035 0.85867 0.82971 0.76189 1.90830 1.15916 1.83166 1.49927 1.45962 1.09414 1.05948 1.76474 1.21129 0.98233 0.79630 0.97721 0.88319 1.22251 1.02578 1.01832 0.95916 1.20960 0.93058 0.81575 1.01269 0.88792 1.22265 0.98021 1.01145 1.01139 1.46075 1.50144 1.06743 1.35853 1.20343 0.79967 0.87336 0.80240 1.90700 1.33694 1.80409 1.34107 1.23539 1.05476 0.94329 1.07124 1.85386 1.59227 1.01834 1.36850 1.22866 1.32494 0.93080 1.19963 0.90892 1.24996 0.94836 0.99293 0.94462 1.70018 1.30883 1.31775 1.17612 0.86161 0.79218 0.82146 0.77947 1.20275 1.20737 1.19676 0.91403 0.91975 0.90118 0.83899 0.81115 0.77087 0.91777 0.91249 0.91500 0.91725 0.92669 0.90896 0.76500 0.89092 0.89145 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 9.83 36.00 0.35 -0.47 16 2 C -0.07 -0.67 6.21 -104.16 -0.65 -1.32 16 3 C -0.21 -1.55 10.76 -39.98 -0.43 -1.98 16 4 C 0.03 0.15 11.89 -16.91 -0.20 -0.05 16 5 N -0.54 -3.18 5.99 -9.39 -0.06 -3.23 16 6 H 0.42 1.23 8.19 -40.82 -0.33 0.89 16 7 C -0.06 -0.58 7.06 -81.98 -0.58 -1.16 16 8 C 0.59 6.24 7.75 -12.85 -0.10 6.14 16 9 O -0.52 -7.15 14.47 5.19 0.08 -7.07 16 10 N -0.72 -5.91 4.98 -55.11 -0.27 -6.19 16 11 C 0.14 1.27 2.62 -67.93 -0.18 1.09 16 12 H 0.10 1.10 7.58 -51.93 -0.39 0.71 16 13 C -0.17 -1.34 9.00 37.16 0.33 -1.01 16 14 C 0.14 1.46 2.62 -67.93 -0.18 1.28 16 15 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 16 C -0.17 -1.50 9.00 37.16 0.33 -1.17 16 17 N -0.73 -9.07 4.99 -53.80 -0.27 -9.34 16 18 C 0.53 9.50 7.81 -10.98 -0.09 9.41 16 19 O -0.52 -11.15 15.52 5.56 0.09 -11.06 16 20 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 21 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 22 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 23 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 24 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 25 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 26 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.86 6.49 -51.93 -0.34 0.52 16 33 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.17 0.35 8.06 -52.49 -0.42 -0.07 16 35 H 0.39 2.25 5.71 -40.82 -0.23 2.01 16 36 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 37 H 0.07 0.50 6.29 -51.93 -0.33 0.17 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 40 H 0.05 0.34 6.29 -51.93 -0.33 0.01 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.40 3.93 6.58 -40.82 -0.27 3.66 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 44 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 385.22 15.07 5.81 5.81 Total: -1.00 -36.81 385.22 -8.31 -45.12 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.22 Total: 3.65 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -0.96 Total: -4.88 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.13 Total: -44.04 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.16 Total: -18.13 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.81 -8.31 -45.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718085456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.124 kcal (2) G-P(sol) polarization free energy of solvation -36.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds