Wall clock time and date at job start Tue Mar 31 2020 23:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39839 * 126.45848 * 2 1 4 4 C 1.35458 * 107.86439 * 180.30733 * 3 2 1 5 5 N 1.35534 * 108.87116 * 359.73947 * 4 3 2 6 6 H 0.97003 * 125.68001 * 180.02562 * 5 4 3 7 7 C 1.37653 * 108.64366 * 0.02562 * 5 4 3 8 8 C 1.46678 * 126.23116 * 180.02562 * 7 5 4 9 9 O 1.21695 * 119.99993 * 180.02562 * 8 7 5 10 10 N 1.34775 * 120.00199 * 0.02562 * 8 7 5 11 11 C 1.46503 * 120.00091 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46807 * 324.99746 * 11 10 8 13 13 C 1.52998 * 109.46969 * 85.00295 * 11 10 8 14 14 C 1.53002 * 109.46849 * 204.99890 * 11 10 8 15 15 H 1.09002 * 109.47070 * 65.00067 * 14 11 10 16 16 C 1.53000 * 109.47233 * 304.99693 * 14 11 10 17 17 N 1.46499 * 109.46799 * 185.00167 * 14 11 10 18 18 C 1.34781 * 119.99874 * 205.00309 * 17 14 11 19 19 O 1.21278 * 120.00033 * 359.97438 * 18 17 14 20 20 C 1.50703 * 120.00101 * 179.97438 * 18 17 14 21 21 S 1.80993 * 109.47222 * 179.97438 * 20 18 17 22 22 C 1.76199 * 100.00057 * 179.97438 * 21 20 18 23 23 H 1.07997 * 119.99970 * 0.02562 * 22 21 20 24 24 C 1.38800 * 120.00000 * 180.02562 * 22 21 20 25 25 N 1.31636 * 120.00005 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00148 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46820 * 90.00022 * 26 24 22 28 28 H 1.48493 * 109.47002 * 210.00109 * 26 24 22 29 29 H 1.48496 * 109.46952 * 330.00216 * 26 24 22 30 30 H 1.09000 * 109.46578 * 270.13323 * 1 2 3 31 31 H 1.08994 * 109.46994 * 30.13176 * 1 2 3 32 32 H 1.08997 * 109.47213 * 150.13727 * 1 2 3 33 33 H 1.07994 * 126.07122 * 0.02652 * 3 2 1 34 34 H 1.07994 * 125.56125 * 179.70648 * 4 3 2 35 35 H 0.97002 * 119.99909 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.47805 * 60.00062 * 13 11 10 37 37 H 1.09003 * 109.46952 * 180.02562 * 13 11 10 38 38 H 1.09001 * 109.47027 * 299.99535 * 13 11 10 39 39 H 1.08992 * 109.47399 * 300.00166 * 16 14 11 40 40 H 1.09004 * 109.46724 * 60.00652 * 16 14 11 41 41 H 1.09001 * 109.47194 * 179.97438 * 16 14 11 42 42 H 0.97002 * 120.00410 * 24.99527 * 17 14 11 43 43 H 1.09002 * 109.46880 * 299.99754 * 20 18 17 44 44 H 1.09003 * 109.46851 * 59.99965 * 20 18 17 45 45 H 0.96998 * 119.99706 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6928 -0.0069 5 7 3.6284 -0.6625 -0.0054 6 1 4.4190 -1.2245 -0.0090 7 6 2.3263 -1.1089 0.0020 8 6 1.8898 -2.5092 0.0064 9 8 0.7026 -2.7766 0.0125 10 7 2.8036 -3.4999 0.0037 11 6 2.3677 -4.8986 0.0076 12 1 1.4586 -4.9941 0.6012 13 6 2.0897 -5.3500 -1.4276 14 6 3.4668 -5.7736 0.6136 15 1 3.6031 -5.5111 1.6627 16 6 4.7764 -5.5449 -0.1438 17 7 3.0820 -7.1833 0.5088 18 6 3.5884 -8.0860 1.3720 19 8 4.3630 -7.7314 2.2352 20 6 3.1922 -9.5360 1.2647 21 16 4.0335 -10.4884 2.5534 22 6 3.4060 -12.0974 2.2038 23 1 2.7138 -12.2413 1.3874 24 6 3.8013 -13.1797 2.9776 25 7 4.6454 -13.0043 3.9723 26 14 3.1355 -14.8854 2.6074 27 1 4.0319 -15.5673 1.6395 28 1 3.0710 -15.6748 3.8634 29 1 1.7745 -14.7697 2.0249 30 1 -0.3632 0.0024 1.0277 31 1 -0.3633 0.8888 -0.5159 32 1 -0.3633 -0.8912 -0.5117 33 1 2.0137 2.1548 0.0004 34 1 4.4972 1.3252 -0.0132 35 1 3.7499 -3.2868 -0.0007 36 1 2.9988 -5.2545 -2.0212 37 1 1.7649 -6.3905 -1.4247 38 1 1.3066 -4.7266 -1.8593 39 1 4.6401 -5.8073 -1.1928 40 1 5.0628 -4.4960 -0.0658 41 1 5.5596 -6.1679 0.2882 42 1 2.4627 -7.4670 -0.1818 43 1 2.1133 -9.6281 1.3902 44 1 3.4781 -9.9192 0.2851 45 1 4.9214 -13.7607 4.5133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718085456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:49 Heat of formation + Delta-G solvation = -62.258211 kcal Electronic energy + Delta-G solvation = -26210.810621 eV Core-core repulsion = 22353.953988 eV Total energy + Delta-G solvation = -3856.856633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.33003 -41.14149 -40.15988 -38.01808 -35.26266 -34.58608 -33.51239 -32.61195 -31.15516 -30.07253 -29.80856 -27.84338 -27.66268 -25.83631 -23.76017 -22.17716 -21.54833 -20.99874 -20.44410 -19.84386 -19.60201 -18.04536 -17.34316 -17.15431 -16.88239 -16.52548 -16.35544 -16.33233 -15.86970 -15.54756 -15.11868 -14.88590 -14.71541 -14.58387 -14.46373 -14.18672 -13.90297 -13.65479 -13.59704 -13.40954 -13.26025 -13.17645 -13.16189 -12.89524 -12.85574 -12.60576 -12.54187 -12.14128 -11.99665 -11.73168 -11.14578 -11.10951 -10.97336 -10.33907 -10.28177 -10.21540 -9.69722 -9.12378 -8.66675 -8.35214 -6.12899 0.44194 1.24603 1.42089 1.44732 1.55073 1.58342 1.82855 1.86286 2.22611 2.26802 2.30934 2.41940 2.99074 3.30795 3.41524 3.75704 3.87131 3.93508 4.05781 4.24596 4.27274 4.29106 4.32688 4.38358 4.41771 4.51022 4.63395 4.65292 4.87872 4.88153 4.89053 4.90213 5.00645 5.10857 5.17024 5.28146 5.36196 5.41765 5.42819 5.46344 5.76199 5.97355 6.19519 6.38329 6.44655 6.61067 7.06406 7.08661 7.20068 8.73883 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030601 B = 0.001804 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.796573 B =15513.877982 C =15846.164384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.095 4.095 3 C -0.233 4.233 4 C 0.050 3.950 5 N -0.530 5.530 6 H 0.430 0.570 7 C -0.090 4.090 8 C 0.589 3.411 9 O -0.563 6.563 10 N -0.712 5.712 11 C 0.147 3.853 12 H 0.077 0.923 13 C -0.163 4.163 14 C 0.140 3.860 15 H 0.071 0.929 16 C -0.163 4.163 17 N -0.707 5.707 18 C 0.538 3.462 19 O -0.560 6.560 20 C -0.132 4.132 21 S -0.149 6.149 22 C -0.547 4.547 23 H 0.083 0.917 24 C 0.013 3.987 25 N -0.911 5.911 26 Si 0.998 3.002 27 H -0.267 1.267 28 H -0.278 1.278 29 H -0.259 1.259 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.158 0.842 34 H 0.213 0.787 35 H 0.407 0.593 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.045 0.955 42 H 0.415 0.585 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.337 28.234 -15.122 32.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.256 4.256 4 C -0.087 4.087 5 N -0.127 5.127 6 H 0.270 0.730 7 C -0.202 4.202 8 C 0.378 3.622 9 O -0.442 6.442 10 N -0.365 5.365 11 C 0.042 3.958 12 H 0.095 0.905 13 C -0.221 4.221 14 C 0.035 3.965 15 H 0.089 0.911 16 C -0.221 4.221 17 N -0.363 5.363 18 C 0.324 3.676 19 O -0.438 6.438 20 C -0.283 4.283 21 S 0.078 5.922 22 C -0.694 4.694 23 H 0.101 0.899 24 C -0.191 4.191 25 N -0.547 5.547 26 Si 0.820 3.180 27 H -0.192 1.192 28 H -0.204 1.204 29 H -0.183 1.183 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.176 0.824 34 H 0.229 0.771 35 H 0.245 0.755 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.254 0.746 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.691 28.397 -13.560 31.514 hybrid contribution -0.616 -1.810 -0.914 2.119 sum -2.307 26.587 -14.474 30.359 Atomic orbital electron populations 1.20301 0.89804 1.02607 1.01911 1.20286 0.96225 0.92037 1.01830 1.21118 0.92387 0.99095 1.13045 1.22694 1.00361 0.82744 1.02864 1.41947 1.06475 1.07893 1.56375 0.73011 1.19999 0.85349 0.92565 1.22308 1.17280 0.85507 0.83846 0.75546 1.90806 1.17599 1.83840 1.51979 1.45787 1.09908 1.05120 1.75727 1.20928 0.96646 0.79954 0.98279 0.90472 1.22229 1.03059 1.02138 0.94710 1.21024 0.94637 0.80265 1.00606 0.91063 1.22235 0.95689 1.02766 1.01435 1.45810 1.49053 1.06901 1.34579 1.20025 0.79799 0.87242 0.80511 1.90692 1.35961 1.80882 1.36235 1.23388 1.05382 0.94494 1.05022 1.85545 1.61519 1.03813 1.41288 1.23211 1.32565 0.93415 1.20253 0.89902 1.26118 0.94933 1.04043 0.94053 1.70181 1.32452 1.33197 1.18905 0.84961 0.79006 0.76127 0.77944 1.19242 1.20368 1.18278 0.91969 0.90361 0.92272 0.82449 0.77065 0.75477 0.90106 0.90206 0.92555 0.89941 0.89493 0.93598 0.74601 0.87343 0.86949 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 9.83 71.23 0.70 -0.97 16 2 C -0.09 -1.75 6.21 -19.56 -0.12 -1.87 16 3 C -0.23 -2.93 10.76 22.01 0.24 -2.69 16 4 C 0.05 0.38 11.89 83.48 0.99 1.37 16 5 N -0.53 -4.86 5.99 -183.62 -1.10 -5.96 16 6 H 0.43 1.18 8.19 -92.71 -0.76 0.43 16 7 C -0.09 -1.58 7.06 40.35 0.28 -1.30 16 8 C 0.59 12.36 7.75 86.45 0.67 13.03 16 9 O -0.56 -16.03 14.47 -4.33 -0.06 -16.09 16 10 N -0.71 -10.78 4.98 -446.50 -2.23 -13.01 16 11 C 0.15 2.56 2.62 44.99 0.12 2.68 16 12 H 0.08 1.73 7.58 -2.39 -0.02 1.71 16 13 C -0.16 -2.28 9.00 71.98 0.65 -1.64 16 14 C 0.14 2.82 2.62 44.99 0.12 2.94 16 15 H 0.07 1.83 7.58 -2.39 -0.02 1.81 16 16 C -0.16 -2.59 9.00 71.98 0.65 -1.94 16 17 N -0.71 -16.61 4.99 -442.52 -2.21 -18.81 16 18 C 0.54 18.96 7.81 87.66 0.68 19.64 16 19 O -0.56 -24.81 15.52 -3.02 -0.05 -24.86 16 20 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 21 S -0.15 -8.16 20.57 -56.49 -1.16 -9.32 16 22 C -0.55 -30.99 9.50 67.95 0.65 -30.34 16 23 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 24 C 0.01 0.75 5.49 84.86 0.47 1.22 16 25 N -0.91 -55.73 13.22 21.65 0.29 -55.44 16 26 Si 1.00 43.43 29.55 68.60 2.03 45.46 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 29 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.35 6.49 -2.39 -0.02 1.34 16 33 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.21 -0.20 8.06 -2.91 -0.02 -0.22 16 35 H 0.41 3.73 5.71 -92.71 -0.53 3.20 16 36 H 0.08 0.88 6.56 -2.39 -0.02 0.86 16 37 H 0.08 0.94 6.29 -2.39 -0.02 0.92 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 1.04 6.56 -2.39 -0.02 1.02 16 40 H 0.09 0.81 6.29 -2.39 -0.02 0.79 16 41 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.41 7.19 6.58 -92.71 -0.61 6.58 16 43 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 44 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 45 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -84.60 385.22 1.19 -83.41 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.85 Total: 19.11 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 6.53 Total: -4.49 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -5.25 Total: -93.22 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -0.11 Total: -40.95 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.16 Total: -9.32 kcal Total: -84.60 1.19 -83.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718085456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.153 kcal (2) G-P(sol) polarization free energy of solvation -84.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds