Wall clock time and date at job start Tue Mar 31 2020 23:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39836 * 126.46016 * 2 1 4 4 C 1.35447 * 107.86794 * 180.30148 * 3 2 1 5 5 N 1.35534 * 108.87401 * 359.73644 * 4 3 2 6 6 H 0.96996 * 125.67879 * 179.97438 * 5 4 3 7 7 C 1.37652 * 108.63871 * 0.02562 * 5 4 3 8 8 C 1.46681 * 126.23026 * 179.97438 * 7 5 4 9 9 O 1.21697 * 119.99887 * 180.02562 * 8 7 5 10 10 N 1.34777 * 120.00185 * 0.02562 * 8 7 5 11 11 C 1.46500 * 120.00075 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.47085 * 35.00197 * 11 10 8 13 13 C 1.53001 * 109.46826 * 274.99922 * 11 10 8 14 14 C 1.53000 * 109.47023 * 155.00453 * 11 10 8 15 15 H 1.09002 * 109.47398 * 59.99929 * 14 11 10 16 16 C 1.52997 * 109.47060 * 299.99760 * 14 11 10 17 17 N 1.46500 * 109.47023 * 179.97438 * 14 11 10 18 18 C 1.34777 * 120.00075 * 204.99547 * 17 14 11 19 19 O 1.21287 * 119.99865 * 0.02562 * 18 17 14 20 20 C 1.50699 * 120.00179 * 179.97438 * 18 17 14 21 21 S 1.81001 * 109.47021 * 180.02562 * 20 18 17 22 22 C 1.76199 * 99.99692 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00491 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99834 * 179.97438 * 22 21 20 25 25 N 1.31625 * 120.00150 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00062 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46924 * 60.00101 * 26 24 22 28 28 H 1.48498 * 109.47258 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47062 * 300.00346 * 26 24 22 30 30 H 1.08996 * 109.46955 * 270.13850 * 1 2 3 31 31 H 1.08994 * 109.47023 * 30.14008 * 1 2 3 32 32 H 1.09003 * 109.46531 * 150.14225 * 1 2 3 33 33 H 1.07999 * 126.06574 * 0.02562 * 3 2 1 34 34 H 1.08006 * 125.56888 * 179.70383 * 4 3 2 35 35 H 0.97006 * 119.99702 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.47508 * 300.00018 * 13 11 10 37 37 H 1.09000 * 109.47437 * 60.00616 * 13 11 10 38 38 H 1.09001 * 109.47109 * 179.97438 * 13 11 10 39 39 H 1.09002 * 109.47153 * 300.00319 * 16 14 11 40 40 H 1.08998 * 109.47533 * 59.99948 * 16 14 11 41 41 H 1.08996 * 109.47853 * 180.02562 * 16 14 11 42 42 H 0.96997 * 120.00274 * 24.99518 * 17 14 11 43 43 H 1.08999 * 109.47169 * 300.00043 * 20 18 17 44 44 H 1.08999 * 109.47104 * 60.00393 * 20 18 17 45 45 H 0.96996 * 120.00313 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6217 0.6928 -0.0068 5 7 3.6284 -0.6625 -0.0052 6 1 4.4191 -1.2243 -0.0093 7 6 2.3263 -1.1089 0.0022 8 6 1.8899 -2.5092 0.0057 9 8 0.7027 -2.7766 0.0119 10 7 2.8037 -3.4999 0.0021 11 6 2.3678 -4.8986 0.0050 12 1 1.4534 -4.9953 -0.5801 13 6 2.1027 -5.3471 1.4436 14 6 3.4614 -5.7748 -0.6090 15 1 4.3759 -5.6781 -0.0238 16 6 3.7266 -5.3263 -2.0475 17 7 3.0258 -7.1736 -0.6055 18 6 3.9397 -8.1641 -0.6091 19 8 5.1229 -7.8974 -0.6147 20 6 3.4916 -9.6029 -0.6049 21 16 4.9415 -10.6863 -0.6104 22 6 4.1479 -12.2595 -0.6036 23 1 3.0696 -12.3204 -0.5984 24 6 4.9085 -13.4205 -0.6059 25 7 6.2226 -13.3464 -0.6127 26 14 4.0672 -15.0883 -0.5980 27 1 3.2122 -15.2171 -1.8054 28 1 5.0942 -16.1609 -0.6015 29 1 3.2262 -15.2127 0.6196 30 1 -0.3633 0.0025 1.0276 31 1 -0.3633 0.8887 -0.5160 32 1 -0.3632 -0.8913 -0.5117 33 1 2.0137 2.1548 0.0004 34 1 4.4973 1.3252 -0.0131 35 1 3.7500 -3.2868 -0.0024 36 1 3.0172 -5.2503 2.0288 37 1 1.3236 -4.7229 1.8811 38 1 1.7780 -6.3876 1.4458 39 1 2.8120 -5.4231 -2.6327 40 1 4.0508 -4.2857 -2.0498 41 1 4.5053 -5.9508 -2.4853 42 1 2.0795 -7.3869 -0.6007 43 1 2.8977 -9.7959 0.2884 44 1 2.8884 -9.7981 -1.4915 45 1 6.7542 -14.1578 -0.6148 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718085457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:55 Heat of formation + Delta-G solvation = -39.881794 kcal Electronic energy + Delta-G solvation = -26203.007311 eV Core-core repulsion = 22347.120992 eV Total energy + Delta-G solvation = -3855.886319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.74476 -40.04507 -39.10787 -36.83294 -34.26627 -32.85652 -32.45241 -31.52019 -30.48898 -29.57504 -28.53148 -27.16046 -25.50933 -24.31361 -22.86172 -21.44855 -20.91051 -20.35543 -19.62016 -19.01899 -17.90291 -16.79932 -16.48974 -15.86571 -15.61825 -15.55841 -15.05590 -14.82302 -14.55054 -14.22536 -14.10497 -14.00431 -13.80601 -13.60096 -13.35019 -13.24740 -12.95149 -12.76090 -12.61180 -12.51372 -12.48963 -12.06347 -11.94514 -11.84051 -11.58115 -11.07212 -11.05479 -10.95755 -10.78550 -10.29202 -9.85212 -9.60834 -9.46814 -9.17141 -9.08984 -8.99689 -8.54335 -8.27900 -6.53147 -6.23990 -3.94891 1.08764 2.34865 2.52346 2.69623 3.00907 3.03678 3.09448 3.22173 3.26592 3.31575 3.70489 4.18116 4.20172 4.51440 4.61570 4.68788 4.81828 4.89138 4.94241 5.07183 5.11293 5.21322 5.26691 5.42070 5.43594 5.46472 5.53396 5.59512 5.61006 5.64521 5.80296 5.81765 5.84903 5.97269 6.01293 6.07193 6.10098 6.11227 6.32890 6.53657 6.56741 6.92824 7.12134 7.57054 7.60917 7.82718 8.32758 8.52554 9.21410 10.83359 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034759 B = 0.001795 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.343303 B =15597.559506 C =16071.137710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.071 4.071 3 C -0.213 4.213 4 C 0.028 3.972 5 N -0.541 5.541 6 H 0.416 0.584 7 C -0.063 4.063 8 C 0.593 3.407 9 O -0.524 6.524 10 N -0.723 5.723 11 C 0.139 3.861 12 H 0.096 0.904 13 C -0.164 4.164 14 C 0.138 3.862 15 H 0.092 0.908 16 C -0.163 4.163 17 N -0.730 5.730 18 C 0.536 3.464 19 O -0.516 6.516 20 C -0.154 4.154 21 S -0.059 6.059 22 C -0.537 4.537 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.919 3.081 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.143 0.857 34 H 0.172 0.828 35 H 0.394 0.606 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.400 0.600 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.038 28.429 1.277 29.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.238 4.238 4 C -0.108 4.108 5 N -0.138 5.138 6 H 0.254 0.746 7 C -0.175 4.175 8 C 0.381 3.619 9 O -0.400 6.400 10 N -0.375 5.375 11 C 0.034 3.966 12 H 0.114 0.886 13 C -0.222 4.222 14 C 0.032 3.968 15 H 0.110 0.890 16 C -0.222 4.222 17 N -0.385 5.385 18 C 0.323 3.677 19 O -0.390 6.390 20 C -0.305 4.305 21 S 0.167 5.833 22 C -0.685 4.685 23 H 0.091 0.909 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.161 0.839 34 H 0.189 0.811 35 H 0.228 0.772 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.234 0.766 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.638 28.408 1.271 29.201 hybrid contribution -1.287 -1.537 0.015 2.004 sum -7.924 26.871 1.286 28.045 Atomic orbital electron populations 1.20357 0.89238 1.02962 1.02275 1.19988 0.95955 0.90771 1.01310 1.20830 0.91843 0.98887 1.12215 1.22036 0.99640 0.82926 1.06178 1.41960 1.07146 1.07354 1.57300 0.74645 1.20194 0.83801 0.93428 1.20114 1.17002 0.85820 0.82911 0.76181 1.90824 1.15901 1.83167 1.50089 1.45820 1.09340 1.05970 1.76332 1.21159 0.98164 0.79588 0.97717 0.88569 1.22181 1.02395 1.02190 0.95425 1.20994 0.97430 0.81367 0.97026 0.89039 1.22189 1.02720 1.01085 0.96164 1.45933 1.10034 1.04662 1.77894 1.20313 0.85895 0.86776 0.74765 1.90698 1.16749 1.84093 1.47482 1.23537 1.07204 0.94664 1.05053 1.85371 1.03677 0.97502 1.96739 1.22829 0.95057 0.91476 1.59121 0.90940 1.24988 0.94854 0.99205 0.94487 1.70000 1.04218 1.29334 1.46756 0.86224 0.78942 0.81515 0.78829 1.19923 1.20802 1.19925 0.91486 0.91976 0.90108 0.83923 0.81123 0.77203 0.92206 0.91787 0.90928 0.92252 0.92232 0.91242 0.76592 0.89121 0.89125 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 9.83 36.00 0.35 -0.44 16 2 C -0.07 -0.66 6.21 -104.16 -0.65 -1.31 16 3 C -0.21 -1.53 10.76 -39.98 -0.43 -1.96 16 4 C 0.03 0.15 11.89 -16.91 -0.20 -0.05 16 5 N -0.54 -3.13 5.99 -9.39 -0.06 -3.18 16 6 H 0.42 1.24 8.19 -40.82 -0.33 0.90 16 7 C -0.06 -0.57 7.06 -81.98 -0.58 -1.15 16 8 C 0.59 6.04 7.75 -12.85 -0.10 5.94 16 9 O -0.52 -6.92 14.47 5.19 0.08 -6.84 16 10 N -0.72 -5.75 4.38 -55.11 -0.24 -5.99 16 11 C 0.14 1.25 2.21 -67.93 -0.15 1.10 16 12 H 0.10 0.95 7.58 -51.93 -0.39 0.56 16 13 C -0.16 -1.53 9.33 37.16 0.35 -1.19 16 14 C 0.14 1.44 2.21 -67.93 -0.15 1.29 16 15 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 16 C -0.16 -1.66 9.33 37.16 0.35 -1.31 16 17 N -0.73 -8.92 4.38 -53.81 -0.24 -9.15 16 18 C 0.54 9.36 7.81 -10.99 -0.09 9.28 16 19 O -0.52 -10.98 15.52 5.55 0.09 -10.89 16 20 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 21 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 22 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 23 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 24 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 25 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 26 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 29 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.84 6.49 -51.93 -0.34 0.50 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.17 0.35 8.06 -52.48 -0.42 -0.07 16 35 H 0.39 2.23 7.52 -40.82 -0.31 1.92 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.67 7.44 -51.93 -0.39 0.28 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.48 7.45 -51.93 -0.39 0.10 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.40 3.90 8.39 -40.82 -0.34 3.55 16 43 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 44 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 392.92 15.07 5.92 5.92 Total: -1.00 -36.40 392.92 -8.48 -44.88 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.65 Total: 3.39 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -0.87 Total: -5.37 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.20 Total: -43.52 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.16 Total: -17.73 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.40 -8.48 -44.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718085457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.994 kcal (2) G-P(sol) polarization free energy of solvation -36.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds