Wall clock time and date at job start Tue Mar 31 2020 23:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39833 * 126.46015 * 2 1 4 4 C 1.35451 * 107.86501 * 180.26108 * 3 2 1 5 5 N 1.35535 * 108.87071 * 359.74230 * 4 3 2 6 6 H 0.96999 * 125.67535 * 179.97438 * 5 4 3 7 7 C 1.37646 * 108.64622 * 359.97438 * 5 4 3 8 8 C 1.46681 * 126.23751 * 179.97438 * 7 5 4 9 9 O 1.21693 * 120.00109 * 180.02562 * 8 7 5 10 10 N 1.34771 * 119.99405 * 0.02824 * 8 7 5 11 11 C 1.46505 * 119.99622 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.47196 * 64.99810 * 12 11 10 14 14 C 1.52997 * 109.47504 * 184.99959 * 12 11 10 15 15 N 1.46503 * 109.47269 * 304.99931 * 12 11 10 16 16 C 1.46500 * 119.99754 * 300.00300 * 15 12 11 17 17 C 1.34780 * 119.99889 * 119.99501 * 15 12 11 18 18 O 1.21276 * 120.00389 * 0.02562 * 17 15 12 19 19 C 1.50700 * 119.99528 * 179.97438 * 17 15 12 20 20 S 1.81007 * 109.47061 * 180.02562 * 19 17 15 21 21 C 1.76197 * 99.99962 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00541 * 0.02562 * 21 20 19 23 23 C 1.38804 * 119.99796 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99711 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00149 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46830 * 89.99982 * 25 23 21 27 27 H 1.48501 * 109.47222 * 210.00070 * 25 23 21 28 28 H 1.48502 * 109.46721 * 330.00363 * 25 23 21 29 29 H 1.09004 * 109.47115 * 270.18391 * 1 2 3 30 30 H 1.09005 * 109.47075 * 30.18131 * 1 2 3 31 31 H 1.09000 * 109.47677 * 150.18166 * 1 2 3 32 32 H 1.08000 * 126.06860 * 0.02562 * 3 2 1 33 33 H 1.07997 * 125.56505 * 179.71697 * 4 3 2 34 34 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 36 36 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 37 37 H 1.09000 * 109.47400 * 180.02562 * 14 12 11 38 38 H 1.09004 * 109.46881 * 300.00361 * 14 12 11 39 39 H 1.09002 * 109.47016 * 59.99741 * 14 12 11 40 40 H 1.08992 * 109.47332 * 90.00087 * 16 15 12 41 41 H 1.09008 * 109.46640 * 209.99942 * 16 15 12 42 42 H 1.08994 * 109.47047 * 329.98940 * 16 15 12 43 43 H 1.09000 * 109.47800 * 300.00464 * 19 17 15 44 44 H 1.09006 * 109.47185 * 60.01006 * 19 17 15 45 45 H 0.97006 * 119.99830 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6218 0.6927 -0.0059 5 7 3.6283 -0.6626 -0.0038 6 1 4.4190 -1.2245 -0.0073 7 6 2.3262 -1.1090 0.0041 8 6 1.8897 -2.5093 0.0082 9 8 0.7025 -2.7766 0.0148 10 7 2.8035 -3.4999 0.0047 11 6 2.3675 -4.8986 0.0093 12 6 3.5928 -5.8148 0.0033 13 1 4.1495 -5.6831 0.9312 14 6 3.1401 -7.2712 -0.1176 15 7 4.4516 -5.4744 -1.1338 16 6 3.9308 -5.5709 -2.4997 17 6 5.7207 -5.0723 -0.9232 18 8 6.1519 -4.9928 0.2075 19 6 6.6041 -4.7228 -2.0930 20 16 8.2360 -4.2242 -1.4888 21 6 9.0374 -3.8813 -3.0200 22 1 8.5019 -4.0052 -3.9496 23 6 10.3573 -3.4518 -3.0315 24 7 11.0103 -3.3012 -1.8985 25 14 11.2069 -3.0875 -4.6547 26 1 10.9999 -1.6611 -5.0125 27 1 12.6610 -3.3591 -4.5243 28 1 10.6350 -3.9525 -5.7177 29 1 -0.3633 0.0033 1.0277 30 1 -0.3633 0.8884 -0.5167 31 1 -0.3634 -0.8916 -0.5110 32 1 2.0137 2.1548 0.0004 33 1 4.4972 1.3251 -0.0117 34 1 3.7498 -3.2870 -0.0009 35 1 1.7738 -5.0911 0.9030 36 1 1.7639 -5.0940 -0.8770 37 1 4.0131 -7.9240 -0.1214 38 1 2.5012 -7.5245 0.7285 39 1 2.5835 -7.4029 -1.0454 40 1 3.4839 -4.6189 -2.7862 41 1 4.7456 -5.8102 -3.1831 42 1 3.1756 -6.3554 -2.5460 43 1 6.7076 -5.5918 -2.7428 44 1 6.1573 -3.9013 -2.6531 45 1 11.9326 -3.0007 -1.9065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718155867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:10 Heat of formation + Delta-G solvation = -31.269335 kcal Electronic energy + Delta-G solvation = -27223.053344 eV Core-core repulsion = 23367.540490 eV Total energy + Delta-G solvation = -3855.512855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.43818 -40.10618 -38.94127 -36.60589 -34.45242 -32.67579 -32.52647 -32.11399 -29.90716 -28.86035 -27.37490 -26.99001 -26.03395 -25.58022 -22.43075 -21.77396 -20.69305 -19.65252 -18.99648 -18.59793 -17.84377 -17.08462 -16.34702 -16.06313 -15.71690 -15.40511 -15.24434 -14.89169 -14.45718 -14.09095 -14.00523 -13.76739 -13.48579 -13.32216 -13.23306 -13.05625 -12.97604 -12.73667 -12.62338 -12.44224 -12.34619 -12.33835 -12.10431 -11.91899 -11.68395 -11.18182 -11.14026 -11.10949 -10.83939 -10.08365 -9.90751 -9.57077 -9.30454 -9.16068 -8.88147 -8.74990 -8.36181 -8.25283 -6.62743 -6.31658 -4.03487 1.36866 2.64043 2.71082 2.82025 2.96438 3.06803 3.15301 3.19092 3.23494 3.28401 3.47093 4.10812 4.39445 4.68012 4.81370 4.93507 4.96979 4.97290 5.00194 5.04016 5.08030 5.20613 5.28169 5.34320 5.39725 5.44555 5.47389 5.62831 5.65609 5.73981 5.76714 5.81420 5.83462 5.91949 5.99879 6.01454 6.16673 6.30099 6.48530 6.61606 6.85165 7.22918 7.32336 7.38783 7.50237 8.03938 8.25327 8.33529 9.14163 10.75587 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010094 B = 0.003309 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.388191 B = 8460.586700 C =10484.568636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.075 4.075 3 C -0.217 4.217 4 C 0.035 3.965 5 N -0.537 5.537 6 H 0.420 0.580 7 C -0.066 4.066 8 C 0.591 3.409 9 O -0.533 6.533 10 N -0.727 5.727 11 C 0.114 3.886 12 C 0.122 3.878 13 H 0.109 0.891 14 C -0.157 4.157 15 N -0.619 5.619 16 C 0.077 3.923 17 C 0.530 3.470 18 O -0.516 6.516 19 C -0.152 4.152 20 S -0.060 6.060 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.075 3.925 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.276 1.276 27 H -0.281 1.281 28 H -0.272 1.272 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.142 0.858 33 H 0.173 0.827 34 H 0.398 0.602 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.854 0.761 1.835 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.241 4.241 4 C -0.102 4.102 5 N -0.133 5.133 6 H 0.258 0.742 7 C -0.179 4.179 8 C 0.380 3.620 9 O -0.410 6.410 10 N -0.378 5.378 11 C -0.010 4.010 12 C 0.018 3.982 13 H 0.127 0.873 14 C -0.216 4.216 15 N -0.355 5.355 16 C -0.066 4.066 17 C 0.319 3.681 18 O -0.391 6.391 19 C -0.303 4.303 20 S 0.166 5.834 21 C -0.685 4.685 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.744 3.256 26 H -0.202 1.202 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.160 0.840 33 H 0.190 0.810 34 H 0.233 0.767 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.789 0.554 3.599 19.138 hybrid contribution 1.107 0.024 -2.496 2.731 sum -17.682 0.578 1.103 17.726 Atomic orbital electron populations 1.20322 0.89424 1.02730 1.02048 1.19929 0.95760 0.90787 1.01880 1.20790 0.91808 0.98747 1.12796 1.22107 0.99693 0.82997 1.05419 1.42069 1.07317 1.07542 1.56384 0.74201 1.20169 0.83932 0.93399 1.20401 1.17040 0.85694 0.83090 0.76211 1.90787 1.15928 1.83426 1.50899 1.45828 1.09793 1.06233 1.75973 1.21750 0.96429 0.79859 1.02989 1.21317 0.90767 0.94264 0.91874 0.87283 1.22052 1.02229 0.94675 1.02636 1.47975 1.12205 1.68514 1.06853 1.21774 1.00382 1.01749 0.82696 1.20461 0.81005 0.75805 0.90869 1.90707 1.72714 1.51551 1.24104 1.23584 1.02985 1.04411 0.99273 1.85365 0.99945 1.86211 1.11837 1.22844 1.00120 1.52711 0.92832 0.90945 1.24987 0.96234 0.94714 0.97529 1.70009 1.11191 1.43409 1.25589 0.86175 0.78537 0.78792 0.82064 1.20223 1.20692 1.19658 0.91681 0.92103 0.90301 0.83987 0.80986 0.76713 0.90231 0.90949 0.91346 0.91059 0.91921 0.92770 0.90486 0.91005 0.89091 0.89348 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 9.83 36.01 0.35 -0.63 16 2 C -0.07 -0.93 6.21 -104.16 -0.65 -1.58 16 3 C -0.22 -2.35 10.76 -39.98 -0.43 -2.78 16 4 C 0.03 0.35 11.89 -16.91 -0.20 0.15 16 5 N -0.54 -6.06 5.99 -9.39 -0.06 -6.11 16 6 H 0.42 4.34 8.19 -40.82 -0.33 4.01 16 7 C -0.07 -0.86 7.06 -81.98 -0.58 -1.44 16 8 C 0.59 8.03 7.79 -12.85 -0.10 7.93 16 9 O -0.53 -8.33 14.80 5.20 0.08 -8.25 16 10 N -0.73 -8.58 5.38 -61.62 -0.33 -8.91 16 11 C 0.11 1.17 4.97 -4.04 -0.02 1.15 16 12 C 0.12 1.28 2.80 -67.93 -0.19 1.09 16 13 H 0.11 1.36 6.90 -51.93 -0.36 1.00 16 14 C -0.16 -1.29 9.17 37.16 0.34 -0.95 16 15 N -0.62 -7.46 2.24 -173.94 -0.39 -7.85 16 16 C 0.08 0.74 9.40 59.85 0.56 1.30 16 17 C 0.53 8.80 7.40 -10.98 -0.08 8.72 16 18 O -0.52 -10.33 15.19 5.56 0.08 -10.24 16 19 C -0.15 -2.81 4.71 36.01 0.17 -2.64 16 20 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 21 C -0.54 -14.61 9.50 30.94 0.29 -14.31 16 22 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -25.19 13.22 55.49 0.73 -24.46 16 25 Si 0.92 20.71 29.55 -169.99 -5.02 15.68 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.99 6.49 -51.93 -0.34 0.65 16 32 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.40 4.82 7.00 -40.82 -0.29 4.53 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.72 7.84 -51.93 -0.41 0.31 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.44 6.66 -51.93 -0.35 0.09 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.75 6.44 -51.92 -0.33 0.41 16 42 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 43 H 0.09 1.59 7.40 -51.92 -0.38 1.21 16 44 H 0.09 1.51 8.11 -51.91 -0.42 1.09 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -34.14 387.79 -8.37 -42.51 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.47 Total: 7.56 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -0.62 Total: -2.03 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.04 Total: -47.34 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.16 Total: -18.49 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.14 -8.37 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718155867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.241 kcal (2) G-P(sol) polarization free energy of solvation -34.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds