Wall clock time and date at job start Tue Mar 31 2020 23:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39833 * 126.46015 * 2 1 4 4 C 1.35451 * 107.86501 * 180.26108 * 3 2 1 5 5 N 1.35535 * 108.87071 * 359.74230 * 4 3 2 6 6 H 0.96999 * 125.67535 * 179.97438 * 5 4 3 7 7 C 1.37646 * 108.64622 * 359.97438 * 5 4 3 8 8 C 1.46681 * 126.23751 * 179.97438 * 7 5 4 9 9 O 1.21693 * 120.00109 * 180.02562 * 8 7 5 10 10 N 1.34771 * 119.99405 * 0.02824 * 8 7 5 11 11 C 1.46505 * 119.99622 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.47196 * 64.99810 * 12 11 10 14 14 C 1.52997 * 109.47504 * 184.99959 * 12 11 10 15 15 N 1.46503 * 109.47269 * 304.99931 * 12 11 10 16 16 C 1.46500 * 119.99754 * 300.00300 * 15 12 11 17 17 C 1.34780 * 119.99889 * 119.99501 * 15 12 11 18 18 O 1.21276 * 120.00389 * 0.02562 * 17 15 12 19 19 C 1.50700 * 119.99528 * 179.97438 * 17 15 12 20 20 S 1.81007 * 109.47061 * 180.02562 * 19 17 15 21 21 C 1.76197 * 99.99962 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00541 * 0.02562 * 21 20 19 23 23 C 1.38804 * 119.99796 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99711 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00149 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46830 * 89.99982 * 25 23 21 27 27 H 1.48501 * 109.47222 * 210.00070 * 25 23 21 28 28 H 1.48502 * 109.46721 * 330.00363 * 25 23 21 29 29 H 1.09004 * 109.47115 * 270.18391 * 1 2 3 30 30 H 1.09005 * 109.47075 * 30.18131 * 1 2 3 31 31 H 1.09000 * 109.47677 * 150.18166 * 1 2 3 32 32 H 1.08000 * 126.06860 * 0.02562 * 3 2 1 33 33 H 1.07997 * 125.56505 * 179.71697 * 4 3 2 34 34 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 36 36 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 37 37 H 1.09000 * 109.47400 * 180.02562 * 14 12 11 38 38 H 1.09004 * 109.46881 * 300.00361 * 14 12 11 39 39 H 1.09002 * 109.47016 * 59.99741 * 14 12 11 40 40 H 1.08992 * 109.47332 * 90.00087 * 16 15 12 41 41 H 1.09008 * 109.46640 * 209.99942 * 16 15 12 42 42 H 1.08994 * 109.47047 * 329.98940 * 16 15 12 43 43 H 1.09000 * 109.47800 * 300.00464 * 19 17 15 44 44 H 1.09006 * 109.47185 * 60.01006 * 19 17 15 45 45 H 0.97006 * 119.99830 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6218 0.6927 -0.0059 5 7 3.6283 -0.6626 -0.0038 6 1 4.4190 -1.2245 -0.0073 7 6 2.3262 -1.1090 0.0041 8 6 1.8897 -2.5093 0.0082 9 8 0.7025 -2.7766 0.0148 10 7 2.8035 -3.4999 0.0047 11 6 2.3675 -4.8986 0.0093 12 6 3.5928 -5.8148 0.0033 13 1 4.1495 -5.6831 0.9312 14 6 3.1401 -7.2712 -0.1176 15 7 4.4516 -5.4744 -1.1338 16 6 3.9308 -5.5709 -2.4997 17 6 5.7207 -5.0723 -0.9232 18 8 6.1519 -4.9928 0.2075 19 6 6.6041 -4.7228 -2.0930 20 16 8.2360 -4.2242 -1.4888 21 6 9.0374 -3.8813 -3.0200 22 1 8.5019 -4.0052 -3.9496 23 6 10.3573 -3.4518 -3.0315 24 7 11.0103 -3.3012 -1.8985 25 14 11.2069 -3.0875 -4.6547 26 1 10.9999 -1.6611 -5.0125 27 1 12.6610 -3.3591 -4.5243 28 1 10.6350 -3.9525 -5.7177 29 1 -0.3633 0.0033 1.0277 30 1 -0.3633 0.8884 -0.5167 31 1 -0.3634 -0.8916 -0.5110 32 1 2.0137 2.1548 0.0004 33 1 4.4972 1.3251 -0.0117 34 1 3.7498 -3.2870 -0.0009 35 1 1.7738 -5.0911 0.9030 36 1 1.7639 -5.0940 -0.8770 37 1 4.0131 -7.9240 -0.1214 38 1 2.5012 -7.5245 0.7285 39 1 2.5835 -7.4029 -1.0454 40 1 3.4839 -4.6189 -2.7862 41 1 4.7456 -5.8102 -3.1831 42 1 3.1756 -6.3554 -2.5460 43 1 6.7076 -5.5918 -2.7428 44 1 6.1573 -3.9013 -2.6531 45 1 11.9326 -3.0007 -1.9065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718155867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:10 Heat of formation + Delta-G solvation = -54.040549 kcal Electronic energy + Delta-G solvation = -27224.040778 eV Core-core repulsion = 23367.540490 eV Total energy + Delta-G solvation = -3856.500289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.33027 -41.23599 -40.01415 -37.73359 -35.48971 -34.59430 -33.59704 -33.08803 -30.80880 -30.18651 -28.23676 -27.90127 -27.66320 -26.87501 -23.37440 -22.80161 -21.55833 -20.74931 -20.02789 -19.63527 -19.47703 -18.36001 -17.38003 -17.06828 -16.89146 -16.81135 -16.52322 -16.33400 -15.94995 -15.18851 -14.96549 -14.68893 -14.60692 -14.53262 -14.45897 -14.06664 -13.88142 -13.79187 -13.59406 -13.55789 -13.22639 -13.19924 -13.13012 -13.09936 -12.91132 -12.84637 -12.60522 -12.55556 -11.98379 -11.72335 -11.15411 -11.11911 -10.92586 -10.29856 -10.27669 -9.80090 -9.74074 -9.15220 -8.67139 -8.36187 -6.13357 0.42016 1.23655 1.40702 1.44212 1.50075 1.54341 1.79635 1.94330 2.10892 2.20966 2.26027 2.29361 2.98446 3.23810 3.51868 3.72189 3.85619 4.03658 4.15022 4.18128 4.22240 4.23323 4.25349 4.34717 4.45974 4.54987 4.61698 4.62815 4.76653 4.86036 4.86515 4.90042 4.97150 5.00359 5.14234 5.21035 5.30636 5.41072 5.43361 5.52263 5.74158 5.97399 6.17566 6.19605 6.31219 6.48470 7.02841 7.06030 7.07292 8.72442 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010094 B = 0.003309 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.388191 B = 8460.586700 C =10484.568636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.090 4.090 3 C -0.225 4.225 4 C 0.039 3.961 5 N -0.538 5.538 6 H 0.422 0.578 7 C -0.095 4.095 8 C 0.589 3.411 9 O -0.559 6.559 10 N -0.723 5.723 11 C 0.117 3.883 12 C 0.125 3.875 13 H 0.087 0.913 14 C -0.151 4.151 15 N -0.603 5.603 16 C 0.069 3.931 17 C 0.533 3.467 18 O -0.558 6.558 19 C -0.127 4.127 20 S -0.140 6.140 21 C -0.547 4.547 22 H 0.080 0.920 23 C 0.017 3.983 24 N -0.909 5.909 25 Si 0.993 3.007 26 H -0.268 1.268 27 H -0.279 1.279 28 H -0.260 1.260 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.164 0.836 33 H 0.201 0.799 34 H 0.397 0.603 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.069 0.841 0.045 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C -0.249 4.249 4 C -0.098 4.098 5 N -0.134 5.134 6 H 0.260 0.740 7 C -0.207 4.207 8 C 0.378 3.622 9 O -0.439 6.439 10 N -0.373 5.373 11 C -0.006 4.006 12 C 0.022 3.978 13 H 0.105 0.895 14 C -0.209 4.209 15 N -0.337 5.337 16 C -0.073 4.073 17 C 0.321 3.679 18 O -0.436 6.436 19 C -0.278 4.278 20 S 0.088 5.912 21 C -0.695 4.695 22 H 0.098 0.902 23 C -0.188 4.188 24 N -0.545 5.545 25 Si 0.815 3.185 26 H -0.193 1.193 27 H -0.204 1.204 28 H -0.184 1.184 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.182 0.818 33 H 0.218 0.782 34 H 0.231 0.769 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.043 0.603 1.789 20.132 hybrid contribution 1.362 -0.009 -1.912 2.348 sum -18.680 0.594 -0.123 18.690 Atomic orbital electron populations 1.20301 0.88869 1.02789 1.02204 1.20303 0.96530 0.91380 1.01677 1.21111 0.91734 0.99399 1.12616 1.22680 1.00714 0.82723 1.03679 1.42124 1.06882 1.08089 1.56310 0.74005 1.20241 0.84809 0.93406 1.22237 1.17171 0.85484 0.83631 0.75866 1.90763 1.16824 1.83880 1.52441 1.45853 1.09429 1.06711 1.75333 1.21828 0.96195 0.78821 1.03803 1.21404 0.90116 0.96064 0.90238 0.89509 1.22026 1.02244 0.92130 1.04522 1.47910 1.10660 1.66488 1.08662 1.22038 1.01193 1.03211 0.80839 1.20114 0.82240 0.76076 0.89485 1.90699 1.73928 1.53754 1.25240 1.23404 0.99032 1.05313 1.00088 1.85489 1.05299 1.86937 1.13518 1.23183 1.00668 1.52416 0.93218 0.90183 1.26036 0.97034 0.94341 1.01360 1.70164 1.11582 1.44624 1.28159 0.85032 0.77133 0.78992 0.77346 1.19292 1.20443 1.18381 0.91460 0.90164 0.92018 0.81835 0.78193 0.76925 0.89622 0.89857 0.92396 0.89261 0.89977 0.92208 0.90320 0.88030 0.87721 0.87699 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 9.83 71.24 0.70 -1.14 16 2 C -0.09 -2.19 6.21 -19.56 -0.12 -2.31 16 3 C -0.22 -4.52 10.76 22.01 0.24 -4.29 16 4 C 0.04 0.74 11.89 83.48 0.99 1.73 16 5 N -0.54 -11.88 5.99 -183.62 -1.10 -12.98 16 6 H 0.42 8.74 8.19 -92.71 -0.76 7.98 16 7 C -0.09 -2.45 7.06 40.35 0.28 -2.16 16 8 C 0.59 15.96 7.79 86.45 0.67 16.63 16 9 O -0.56 -17.47 14.80 -4.33 -0.06 -17.53 16 10 N -0.72 -16.74 5.38 -467.07 -2.51 -19.26 16 11 C 0.12 2.23 4.97 86.38 0.43 2.66 16 12 C 0.13 2.46 2.80 44.99 0.13 2.59 16 13 H 0.09 2.17 6.90 -2.39 -0.02 2.15 16 14 C -0.15 -2.10 9.17 71.98 0.66 -1.44 16 15 N -0.60 -13.64 2.24 -822.60 -1.85 -15.48 16 16 C 0.07 1.13 9.40 127.77 1.20 2.33 16 17 C 0.53 17.53 7.40 87.66 0.65 18.18 16 18 O -0.56 -22.89 15.19 -3.02 -0.05 -22.93 16 19 C -0.13 -4.64 4.71 71.24 0.34 -4.30 16 20 S -0.14 -7.24 20.57 -56.49 -1.16 -8.40 16 21 C -0.55 -29.83 9.50 67.96 0.65 -29.18 16 22 H 0.08 4.08 7.80 -2.91 -0.02 4.05 16 23 C 0.02 0.96 5.49 84.86 0.47 1.42 16 24 N -0.91 -53.80 13.22 21.65 0.29 -53.51 16 25 Si 0.99 42.11 29.55 68.60 2.03 44.13 16 26 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 27 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 28 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 29 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.06 1.55 6.49 -2.39 -0.02 1.54 16 32 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 33 H 0.20 2.51 8.06 -2.91 -0.02 2.48 16 34 H 0.40 9.59 7.00 -92.71 -0.65 8.94 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.45 7.84 -2.39 -0.02 1.43 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 0.84 6.66 -2.39 -0.02 0.82 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 1.30 6.44 -2.38 -0.02 1.29 16 42 H 0.10 1.10 6.43 -2.39 -0.02 1.09 16 43 H 0.10 3.52 7.40 -2.40 -0.02 3.51 16 44 H 0.10 3.46 8.11 -2.39 -0.02 3.44 16 45 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 Total: -1.00 -76.07 387.79 2.48 -73.59 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: -0.38 Total: 31.65 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 7.28 Total: 0.72 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -5.18 Total: -101.24 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.11 Total: -40.46 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: -7.24 SS G_CDS: -1.16 Total: -8.40 kcal Total: -76.07 2.48 -73.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718155867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.554 kcal (2) G-P(sol) polarization free energy of solvation -76.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds