Wall clock time and date at job start Tue Mar 31 2020 23:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39838 * 126.45586 * 2 1 4 4 C 1.35451 * 107.86269 * 180.23678 * 3 2 1 5 5 N 1.35536 * 108.87031 * 359.77737 * 4 3 2 6 6 H 0.96998 * 125.67653 * 180.02562 * 5 4 3 7 7 C 1.37646 * 108.64541 * 359.97438 * 5 4 3 8 8 C 1.46686 * 126.23213 * 179.97438 * 7 5 4 9 9 O 1.21691 * 119.99791 * 180.02562 * 8 7 5 10 10 N 1.34777 * 119.99903 * 0.03224 * 8 7 5 11 11 C 1.46496 * 119.99613 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46846 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.47724 * 294.99764 * 12 11 10 14 14 C 1.53009 * 109.47244 * 174.99492 * 12 11 10 15 15 N 1.46504 * 109.47073 * 55.00288 * 12 11 10 16 16 C 1.46500 * 120.00199 * 59.99575 * 15 12 11 17 17 C 1.34780 * 119.99618 * 239.99808 * 15 12 11 18 18 O 1.21278 * 120.00246 * 0.02562 * 17 15 12 19 19 C 1.50702 * 119.99709 * 179.97438 * 17 15 12 20 20 S 1.80996 * 109.46885 * 180.02562 * 19 17 15 21 21 C 1.76200 * 100.00143 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99943 * 0.02562 * 21 20 19 23 23 C 1.38803 * 120.00183 * 179.97438 * 21 20 19 24 24 N 1.31632 * 119.99979 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99791 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47070 * 60.00107 * 25 23 21 27 27 H 1.48501 * 109.46852 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.46983 * 300.00119 * 25 23 21 29 29 H 1.09008 * 109.46749 * 270.15019 * 1 2 3 30 30 H 1.08994 * 109.47105 * 30.15019 * 1 2 3 31 31 H 1.09001 * 109.46924 * 150.15620 * 1 2 3 32 32 H 1.07999 * 126.06742 * 0.02562 * 3 2 1 33 33 H 1.07999 * 125.56154 * 179.75652 * 4 3 2 34 34 H 0.96996 * 119.99871 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47226 * 299.99334 * 11 10 8 36 36 H 1.08999 * 109.47406 * 59.99933 * 11 10 8 37 37 H 1.08995 * 109.47324 * 180.02562 * 14 12 11 38 38 H 1.08996 * 109.46982 * 300.00727 * 14 12 11 39 39 H 1.08996 * 109.46376 * 60.00568 * 14 12 11 40 40 H 1.08999 * 109.47113 * 90.00695 * 16 15 12 41 41 H 1.09007 * 109.46951 * 210.00236 * 16 15 12 42 42 H 1.08999 * 109.46740 * 330.00037 * 16 15 12 43 43 H 1.09002 * 109.46978 * 300.00044 * 19 17 15 44 44 H 1.08997 * 109.47593 * 60.00346 * 19 17 15 45 45 H 0.96996 * 119.99816 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6929 -0.0053 5 7 3.6284 -0.6625 -0.0037 6 1 4.4190 -1.2244 -0.0063 7 6 2.3263 -1.1089 0.0034 8 6 1.8899 -2.5093 0.0068 9 8 0.7027 -2.7766 0.0126 10 7 2.8038 -3.4999 0.0035 11 6 2.3678 -4.8985 0.0063 12 6 3.5932 -5.8146 0.0010 13 1 4.1399 -5.6849 -0.9330 14 6 3.1419 -7.2709 0.1298 15 7 4.4640 -5.4719 1.1282 16 6 3.9579 -5.5656 2.4998 17 6 5.7308 -5.0703 0.9033 18 8 6.1496 -4.9921 -0.2321 19 6 6.6263 -4.7172 2.0628 20 16 8.2511 -4.2188 1.4401 21 6 9.0686 -3.8715 2.9619 22 1 8.5433 -3.9944 3.8974 23 6 10.3882 -3.4409 2.9583 24 7 11.0287 -3.2915 1.8181 25 14 11.2550 -3.0734 4.5717 26 1 11.2797 -4.2984 5.4106 27 1 12.6463 -2.6329 4.2969 28 1 10.5280 -1.9961 5.2900 29 1 -0.3633 0.0027 1.0278 30 1 -0.3633 0.8886 -0.5161 31 1 -0.3633 -0.8914 -0.5114 32 1 2.0137 2.1549 0.0004 33 1 4.4972 1.3253 -0.0104 34 1 3.7500 -3.2868 -0.0015 35 1 1.7731 -5.0919 0.8990 36 1 1.7653 -5.0931 -0.8809 37 1 4.0149 -7.9235 0.1265 38 1 2.5952 -7.4006 1.0638 39 1 2.4941 -7.5259 -0.7089 40 1 4.1508 -6.5646 2.8908 41 1 4.4616 -4.8276 3.1242 42 1 2.8848 -5.3743 2.5049 43 1 6.1851 -3.8943 2.6252 44 1 6.7368 -5.5843 2.7139 45 1 11.9507 -2.9902 1.8156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718155868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:14 Heat of formation + Delta-G solvation = -31.352969 kcal Electronic energy + Delta-G solvation = -27222.123864 eV Core-core repulsion = 23366.607382 eV Total energy + Delta-G solvation = -3855.516481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44168 -40.11034 -38.94510 -36.60862 -34.44788 -32.67733 -32.52540 -32.11448 -29.90948 -28.86405 -27.37056 -26.97286 -26.05586 -25.57850 -22.43768 -21.77307 -20.69591 -19.65233 -18.99833 -18.60212 -17.84379 -17.08981 -16.34294 -16.06468 -15.78394 -15.37797 -15.23034 -14.89080 -14.44347 -14.07990 -13.98991 -13.76440 -13.50448 -13.30563 -13.23018 -13.07396 -12.93830 -12.73738 -12.62701 -12.47296 -12.36568 -12.27488 -12.17396 -11.89629 -11.68786 -11.20555 -11.12991 -11.11426 -10.84708 -10.08704 -9.91609 -9.56305 -9.31268 -9.15244 -8.88346 -8.74783 -8.36549 -8.25586 -6.62713 -6.31390 -4.03384 1.36535 2.63762 2.70862 2.82188 2.96028 3.06517 3.16589 3.18913 3.22417 3.27983 3.46943 4.11062 4.39583 4.67801 4.79924 4.93505 4.95401 4.96881 5.02301 5.04138 5.07854 5.20359 5.28184 5.31977 5.43179 5.43875 5.48076 5.63003 5.65428 5.73875 5.76548 5.82485 5.83258 5.91419 5.99866 6.01161 6.16136 6.29777 6.48318 6.61320 6.84898 7.22600 7.32299 7.38336 7.49986 8.03368 8.25229 8.33513 9.14236 10.75826 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010096 B = 0.003309 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.721349 B = 8460.563065 C =10486.114093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.075 4.075 3 C -0.217 4.217 4 C 0.035 3.965 5 N -0.537 5.537 6 H 0.420 0.580 7 C -0.066 4.066 8 C 0.591 3.409 9 O -0.533 6.533 10 N -0.727 5.727 11 C 0.113 3.887 12 C 0.122 3.878 13 H 0.109 0.891 14 C -0.156 4.156 15 N -0.619 5.619 16 C 0.078 3.922 17 C 0.530 3.470 18 O -0.516 6.516 19 C -0.152 4.152 20 S -0.060 6.060 21 C -0.538 4.538 22 H 0.072 0.928 23 C 0.075 3.925 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.273 1.273 27 H -0.282 1.282 28 H -0.274 1.274 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.142 0.858 33 H 0.173 0.827 34 H 0.399 0.601 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.912 0.921 -1.713 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.241 4.241 4 C -0.102 4.102 5 N -0.133 5.133 6 H 0.258 0.742 7 C -0.179 4.179 8 C 0.380 3.620 9 O -0.410 6.410 10 N -0.378 5.378 11 C -0.011 4.011 12 C 0.018 3.982 13 H 0.127 0.873 14 C -0.215 4.215 15 N -0.355 5.355 16 C -0.065 4.065 17 C 0.319 3.681 18 O -0.391 6.391 19 C -0.303 4.303 20 S 0.167 5.833 21 C -0.686 4.686 22 H 0.090 0.910 23 C -0.134 4.134 24 N -0.502 5.502 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.207 1.207 28 H -0.199 1.199 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.160 0.840 33 H 0.190 0.810 34 H 0.233 0.767 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.863 0.717 -3.483 19.196 hybrid contribution 1.138 -0.007 2.528 2.773 sum -17.725 0.710 -0.955 17.765 Atomic orbital electron populations 1.20324 0.89423 1.02716 1.02066 1.19930 0.95761 0.90788 1.01872 1.20792 0.91808 0.98748 1.12797 1.22107 0.99693 0.82998 1.05408 1.42069 1.07315 1.07541 1.56390 0.74199 1.20163 0.83935 0.93390 1.20410 1.17043 0.85690 0.83093 0.76201 1.90787 1.15931 1.83426 1.50896 1.45829 1.09808 1.06210 1.75991 1.21752 0.96499 0.79883 1.03005 1.21320 0.90499 0.94280 0.92105 0.87281 1.22036 1.02173 0.94642 1.02617 1.47977 1.12212 1.68497 1.06864 1.21766 1.00097 1.02226 0.82457 1.20462 0.81058 0.75817 0.90807 1.90708 1.73237 1.51593 1.23544 1.23583 1.02801 1.04430 0.99448 1.85360 1.00077 1.86115 1.11762 1.22808 1.00168 1.52755 0.92859 0.90994 1.24984 0.96273 0.94700 0.97469 1.69996 1.11604 1.43366 1.25251 0.86232 0.78399 0.78893 0.82058 1.19886 1.20749 1.19905 0.91671 0.92108 0.90299 0.83986 0.80984 0.76698 0.90890 0.90178 0.91395 0.91983 0.91121 0.92447 0.90647 0.91207 0.89335 0.89112 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 9.83 36.01 0.35 -0.62 16 2 C -0.07 -0.93 6.21 -104.16 -0.65 -1.58 16 3 C -0.22 -2.34 10.76 -39.98 -0.43 -2.77 16 4 C 0.03 0.35 11.89 -16.91 -0.20 0.15 16 5 N -0.54 -6.02 5.99 -9.39 -0.06 -6.08 16 6 H 0.42 4.31 8.19 -40.82 -0.33 3.98 16 7 C -0.07 -0.86 7.06 -81.98 -0.58 -1.44 16 8 C 0.59 7.98 7.79 -12.85 -0.10 7.88 16 9 O -0.53 -8.28 14.80 5.20 0.08 -8.20 16 10 N -0.73 -8.52 5.38 -61.62 -0.33 -8.85 16 11 C 0.11 1.15 4.92 -4.05 -0.02 1.13 16 12 C 0.12 1.28 2.80 -67.92 -0.19 1.09 16 13 H 0.11 1.36 6.90 -51.93 -0.36 1.00 16 14 C -0.16 -1.29 9.19 37.16 0.34 -0.95 16 15 N -0.62 -7.47 2.24 -173.92 -0.39 -7.86 16 16 C 0.08 0.74 9.30 59.85 0.56 1.30 16 17 C 0.53 8.81 7.40 -10.98 -0.08 8.72 16 18 O -0.52 -10.33 15.19 5.56 0.08 -10.25 16 19 C -0.15 -2.82 4.71 36.01 0.17 -2.65 16 20 S -0.06 -1.51 20.57 -107.50 -2.21 -3.73 16 21 C -0.54 -14.64 9.50 30.94 0.29 -14.34 16 22 H 0.07 1.86 7.80 -52.48 -0.41 1.45 16 23 C 0.08 2.07 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -25.22 13.22 55.49 0.73 -24.48 16 25 Si 0.92 20.71 29.55 -169.99 -5.02 15.68 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 29 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.98 6.49 -51.93 -0.34 0.64 16 32 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.40 4.79 7.00 -40.82 -0.29 4.50 16 35 H 0.07 0.72 6.88 -51.93 -0.36 0.36 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.75 6.44 -51.93 -0.33 0.41 16 42 H 0.07 0.57 6.53 -51.93 -0.34 0.23 16 43 H 0.09 1.51 7.40 -51.91 -0.38 1.12 16 44 H 0.09 1.60 8.11 -51.92 -0.42 1.18 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 387.81 15.07 5.84 5.84 Total: -1.00 -34.10 387.81 -8.38 -42.48 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.48 Total: 7.53 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -0.63 Total: -2.09 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.04 Total: -47.26 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.16 Total: -18.45 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.10 -8.38 -42.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718155868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.124 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds